Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011467

Physical Location & Seq

Genomic Coordinates Reverse (-)

6708018 .. 6712682

Gene Structure 4665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11280.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGACGATACCTCCAAATCAAGATGATGGTAAAGCGAGGACTACTTATTTCAATTCGCCTGCACTGGATGTCTCCCTTGCTTTTCCCCAAGCAACTCCGGCGTCTAAATTTCCTCCCTGCACTTCCGACTATTATCAATCTAATGATCTATTGACGCCTGAGGAGCAGGCTCTCAGGATGAGAGTTAGACACTGTGTAGAGAAAGAAGTAGCTCCAATCATGGCAGAGTATTGGGAAAAGGCAAAGTTTCCATTTCATATTATTCCAAAGCTCGGTGCCTTGCGAATTGCTGGGGGCACAATCAAGGGTTATGGGTGTCCCGGTCTTTCTGTTACAGCAAATGCTATTGCTACAGCGGAAGTTGCTAGAGTTGATGCTAGCTGTTCTACTTTCATCCTAGTGCATTCATCACTAGCAATGCTCACTATTGCATTATGTGGATCAGAGGCTCAAAAACAGAAATATTTACCGTCTTTGGCAGAGTTCAAAACTGTAGCCTGTTGGGGTTTGACTGAGCCTGATTATGGAAGTGATGCAAGTGCCTTGAAAACCACCGCAACAAAGGTGGAAGGAGGTTGGATACTTGACGGCCAAAAGCGCTGGATAGGAAATGCTACCTTTGCTGATGTGTTGGTTATTTTTGCAAGGAATACAACAACAAATCAGATCAATGGATATATAGTAAACAAGAATGTCCCTGGACTGAAAGCTACAAAAATAGAAAATAAAATTGGTTTGCGCATGGTTCAAAATGGAGATATTCTCTTAAAGCAAGTTTTTGTCCCTGATGAGGACAGGTTACCCGGTGTTAATTCTTTTCAGGATACCAGCAAGGTACTTGCTGTTTCCCGCGTCATGGTTGCCTGGCAACCTATTGGTATATCTATGGGTGTCTATGATATGTGCCACAGGTATCTGAAGGAGAGAAAACAATTTGGAGCACCCCTAGCAGCTTTCCAAATCAACCAAGAGAAACTTGTTCATATGCTGGGTAATGTTCAAGCTATGATACTTATAGGTTGGCGTCTCTGCAAGTTGTACGAAGCAGGTAAAATGACTCCGGGTCAGGCTAGCATGGGGAAGTCATGGATCACTGTGAAAGCAAGGGAAACTGTTGCTCTAGGGAGGGAATTACTGGGCGGCAATGGAATCTTATCCGATTTTCTGGTTGCAAAGGCTTTCTGTGATTTGGAACCCATCTACACCTACGAAGGCACCTATGACATCAACAGCCTAGTGACAGGTAGGGAAATCACTGGGGTTGCCAGCTTCAAACCAGCTCCATCAAGCAAACGAAGCCGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

436

Amino Acids

47.6

Weight (kDa)

8.97

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_N	PF02771	52 - 161	2.3e-28	Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M	PF02770	167 - 259	2.5e-21	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	277 - 392	2e-21	Acyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51840
fragaria_vesca	FvH4_6g11280 FvH4_6g11280
malus_domestica	MD04G1155700.v1.1 MD12G1169900.v1.1
prunus_persica	Prupe.6G279200_v2.0.a1
pyrus_communis	pycom04g14050 pycom12g16190 pycom12g16220
rosa_chinensis	RchiOBHm_Chr3g0462821
rosa_laevigata	RLG00000024830
rosa_multiflora	Rmu_sc0000766.1_g000008 Rmu_sc0009174.1_g000003
rosa_roxburghii	Rroxscaffold_6G00417180
rosa_rugosa	Rorug03G0059400
rosa_samantha	Rh3AG117500 Rh3BG121300 Rh3CG124200 Rh3DG122900
rosa_wichuraiana	Rw3G009960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	740
Acc36I	ACCTGC	1 cut(s)	1037
AccB1I	GGYRCC	2 cut(s)	275, 1214
AccII	CGCG	1 cut(s)	852
AciI	CCGC	5 cut(s)	356, 555, 850, 1140, 1300
AclWI	GGATC	2 cut(s)	448, 1097
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	938
AcyI	GRCGYC	3 cut(s)	101, 155, 1024
AfaI	GTAC	2 cut(s)	837, 1040
AfeI	AGCGCT	1 cut(s)	599
AfiI	CCNNNNNNNGG	4 cut(s)	272, 524, 790, 856
AgsI	TTSAA	6 cut(s)	52, 487, 547, 749, 1001, 1273
AhdI	GACNNNNNGTC	1 cut(s)	1062
AjnI	CCWGG	2 cut(s)	697, 863
AjuI	GAANNNNNNNTTGG	2 cut(s)	714, 746
AluBI	AGCT	8 cut(s)	212, 271, 381, 710, 953, 1004, 1269, 1280
AluI	AGCT	8 cut(s)	212, 271, 381, 710, 953, 1004, 1269, 1280
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	2 cut(s)	76, 1031
AlwI	GGATC	2 cut(s)	448, 1097
Aor51HI	AGCGCT	1 cut(s)	599
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	600, 741
AsuC2I	CCSGG	3 cut(s)	321, 804, 1062
AsuNHI	GCTAGC	2 cut(s)	377, 1070
AxyI	CCTNAGG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	2 cut(s)	275, 1214
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	1 cut(s)	962
BccI	CCATC	3 cut(s)	20, 1205, 1291
BceAI	ACGGC	1 cut(s)	604
BciT130I	CCWGG	2 cut(s)	699, 865
BciVI	GTATCC	2 cut(s)	573, 817
BcnI	CCSGG	3 cut(s)	321, 804, 1062
BcoDI	GTCTC	2 cut(s)	76, 1031
BfaI	CTAG	8 cut(s)	366, 378, 398, 413, 947, 1071, 1121, 1235
BfmI	CTRYAG	3 cut(s)	351, 492, 1304
BfoI	RGCGCY	1 cut(s)	601
BfuAI	ACCTGC	1 cut(s)	1037
BfuI	GTATCC	2 cut(s)	573, 817
BisI	GCNGC	3 cut(s)	951, 1141, 1300
BlsI	GCNGC	3 cut(s)	952, 1142, 1301
Bme1390I	CCNGG	5 cut(s)	321, 699, 804, 865, 1062
BmeRI	GACNNNNNGTC	1 cut(s)	1062
BmiI	GGNNCC	3 cut(s)	277, 1194, 1216
BmrFI	CCNGG	5 cut(s)	321, 699, 804, 865, 1062
BmrI	ACTGGG	2 cut(s)	1145, 1266
BmsI	GCATC	2 cut(s)	364, 523
BmtI	GCTAGC	2 cut(s)	381, 1074
BmuI	ACTGGG	2 cut(s)	1145, 1266
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
BpuMI	CCSGG	3 cut(s)	321, 804, 1062
BsaHI	GRCGYC	3 cut(s)	101, 155, 1024
BsaJI	CCNNGG	1 cut(s)	697
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 524, 790, 856
Bse1I	ACTGG	3 cut(s)	69, 1140, 1261
Bse21I	CCTNAGG	1 cut(s)	159
Bse3DI	GCAATG	2 cut(s)	423, 1150
BseBI	CCWGG	2 cut(s)	699, 865
BseDI	CCNNGG	1 cut(s)	697
BseGI	GGATG	3 cut(s)	73, 183, 393
BseLI	CCNNNNNNNGG	4 cut(s)	272, 524, 790, 856
BseMI	GCAATG	2 cut(s)	423, 1150
BseMII	CTCAG	3 cut(s)	150, 187, 504
BseNI	ACTGG	3 cut(s)	69, 1140, 1261
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	962
BseYI	CCCAGC	2 cut(s)	290, 988
BsgI	GTGCAG	2 cut(s)	45, 103
Bsh1236I	CGCG	1 cut(s)	852
BshFI	GGCC	1 cut(s)	591
BshNI	GGYRCC	2 cut(s)	275, 1214
BsiHKAI	GWGCWC	1 cut(s)	943
BsiSI	CCGG	4 cut(s)	98, 321, 804, 1061
BslFI	GGGAC	3 cut(s)	303, 680, 767
BslI	CCNNNNNNNGG	4 cut(s)	272, 524, 790, 856
BsmAI	GTCTC	2 cut(s)	76, 1031
BsmBI	CGTCTC	1 cut(s)	1031
BsmFI	GGGAC	3 cut(s)	303, 680, 767
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	591
Bsp1286I	GDGCHC	2 cut(s)	299, 943
Bsp143I	GATC	4 cut(s)	145, 440, 666, 1089
BspACI	CCGC	5 cut(s)	356, 555, 850, 1140, 1300
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	3 cut(s)	151, 186, 505
BspFNI	CGCG	1 cut(s)	852
BspLI	GGNNCC	3 cut(s)	277, 1194, 1216
BspMI	ACCTGC	1 cut(s)	1037
BspOI	GCTAGC	2 cut(s)	381, 1074
BspPI	GGATC	2 cut(s)	448, 1097
BspT107I	GGYRCC	2 cut(s)	275, 1214
BsrDI	GCAATG	2 cut(s)	423, 1150
BsrI	ACTGG	3 cut(s)	69, 1140, 1261
BssECI	CCNNGG	1 cut(s)	697
BssMI	GATC	4 cut(s)	145, 440, 666, 1089
BssNI	GRCGYC	3 cut(s)	101, 155, 1024
Bst2UI	CCWGG	2 cut(s)	699, 865
Bst4CI	ACNGT	5 cut(s)	194, 471, 493, 1096, 1114
BstACI	GRCGYC	3 cut(s)	101, 155, 1024
BstC8I	GCNNGC	5 cut(s)	60, 168, 379, 1072, 1267
BstDEI	CTNAG	3 cut(s)	159, 173, 513
BstEII	GGTNACC	1 cut(s)	798
BstF5I	GGATG	3 cut(s)	73, 183, 393
BstFNI	CGCG	1 cut(s)	852
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	2 cut(s)	600, 741
BstKTI	GATC	4 cut(s)	148, 443, 669, 1092
BstMAI	GTCTC	2 cut(s)	76, 1031
BstMBI	GATC	4 cut(s)	145, 440, 666, 1089
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 163, 362, 597, 620, 947, 1296
BstNI	CCWGG	2 cut(s)	699, 865
BstPI	GGTNACC	1 cut(s)	798
BstSCI	CCNGG	5 cut(s)	319, 697, 802, 863, 1060
BstSFI	CTRYAG	3 cut(s)	351, 492, 1304
BstSLI	GKGCMC	1 cut(s)	299
BstUI	CGCG	1 cut(s)	852
BstV1I	GCAGC	1 cut(s)	962
Bsu36I	CCTNAGG	1 cut(s)	159
BsuI	GTATCC	2 cut(s)	573, 817
BsuRI	GGCC	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	73, 183, 393
BtsIMutI	CAGTG	4 cut(s)	62, 190, 1092, 1254
BveI	ACCTGC	1 cut(s)	1037
Cac8I	GCNNGC	5 cut(s)	60, 168, 379, 1072, 1267
CfoI	GCGC	2 cut(s)	600, 741
CseI	GACGC	4 cut(s)	90, 163, 841, 1013
Csp6I	GTAC	2 cut(s)	836, 1039
CspCI	CAANNNNNGTGG	2 cut(s)	546, 581
CviAII	CATG	5 cut(s)	220, 742, 856, 1075, 1086
CviQI	GTAC	2 cut(s)	836, 1039
DdeI	CTNAG	3 cut(s)	159, 173, 513
DpnI	GATC	4 cut(s)	147, 442, 668, 1091
DpnII	GATC	4 cut(s)	145, 440, 666, 1089
DriI	GACNNNNNGTC	1 cut(s)	1062
EaeI	YGGCCR	1 cut(s)	589
Eam1105I	GACNNNNNGTC	1 cut(s)	1062
Eco47III	AGCGCT	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	938
Eco81I	CCTNAGG	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	798
EcoO65I	GGTNACC	1 cut(s)	798
EcoRII	CCWGG	2 cut(s)	697, 863
Esp3I	CGTCTC	1 cut(s)	1031
FaeI	CATG	5 cut(s)	223, 745, 859, 1078, 1089
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	3 cut(s)	303, 680, 767
FatI	CATG	5 cut(s)	219, 741, 855, 1074, 1085
FauI	CCCGC	1 cut(s)	857
FauNDI	CATATG	1 cut(s)	984
Fnu4HI	GCNGC	3 cut(s)	951, 1141, 1300
FokI	GGATG	3 cut(s)	80, 190, 380
Fsp4HI	GCNGC	3 cut(s)	951, 1141, 1300
FspBI	CTAG	8 cut(s)	366, 378, 398, 413, 947, 1071, 1121, 1235
FspI	TGCGCA	1 cut(s)	740
GlaI	GCGC	2 cut(s)	599, 740
GluI	GCNGC	3 cut(s)	951, 1141, 1300
GsaI	CCCAGC	2 cut(s)	294, 992
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	4 cut(s)	98, 321, 804, 1061
HgaI	GACGC	4 cut(s)	90, 163, 841, 1013
HhaI	GCGC	2 cut(s)	600, 741
Hin1I	GRCGYC	3 cut(s)	101, 155, 1024
Hin1II	CATG	5 cut(s)	223, 745, 859, 1078, 1089
Hin6I	GCGC	2 cut(s)	598, 739
HinP1I	GCGC	2 cut(s)	598, 739
HinfI	GANTC	2 cut(s)	1057, 1149
HpaII	CCGG	4 cut(s)	98, 321, 804, 1061
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	5 cut(s)	127, 445, 666, 918, 1159
Hpy188III	TCNNGA	3 cut(s)	20, 175, 821
Hpy8I	GTNNAC	1 cut(s)	685
HpyAV	CCTTC	3 cut(s)	563, 913, 1205
HpyCH4III	ACNGT	5 cut(s)	194, 471, 493, 1096, 1114
HpyCH4V	TGCA	8 cut(s)	62, 120, 403, 431, 536, 644, 1032, 1172
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 163, 362, 597, 620, 947, 1296
HpyF3I	CTNAG	3 cut(s)	159, 173, 513
Hsp92I	GRCGYC	3 cut(s)	101, 155, 1024
Hsp92II	CATG	5 cut(s)	223, 745, 859, 1078, 1089
HspAI	GCGC	2 cut(s)	598, 739
Kzo9I	GATC	4 cut(s)	145, 440, 666, 1089
LmnI	GCTCC	4 cut(s)	163, 217, 938, 1285
Lsp1109I	GCAGC	1 cut(s)	962
LweI	GCATC	2 cut(s)	364, 523
MaeI	CTAG	8 cut(s)	366, 378, 398, 413, 947, 1071, 1121, 1235
MaeIII	GTNAC	3 cut(s)	331, 798, 1237
MalI	GATC	4 cut(s)	147, 442, 668, 1091
MboI	GATC	4 cut(s)	145, 440, 666, 1089
MhlI	GDGCHC	2 cut(s)	299, 943
MluCI	AATT	7 cut(s)	52, 107, 285, 729, 811, 932, 1130
MlyI	GAGTC	1 cut(s)	1051
MmeI	TCCRAC	2 cut(s)	150, 557
MnlI	CCTC	8 cut(s)	21, 30, 123, 154, 439, 566, 784, 1119
MseI	TTAA	2 cut(s)	767, 810
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	4 cut(s)	98, 321, 804, 1061
MspR9I	CCNGG	5 cut(s)	321, 699, 804, 865, 1062
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	2 cut(s)	699, 865
MvnI	CGCG	1 cut(s)	852
MwoI	GCNNNNNNNGC	7 cut(s)	98, 163, 362, 597, 620, 947, 1296
NciI	CCSGG	3 cut(s)	321, 804, 1062
NdeI	CATATG	1 cut(s)	984
NdeII	GATC	4 cut(s)	145, 440, 666, 1089
NheI	GCTAGC	2 cut(s)	377, 1070
NlaIII	CATG	5 cut(s)	223, 745, 859, 1078, 1089
NlaIV	GGNNCC	3 cut(s)	277, 1194, 1216
NmuCI	GTSAC	1 cut(s)	1237
NsbI	TGCGCA	1 cut(s)	740
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	1149
PkrI	GCNGC	3 cut(s)	952, 1142, 1301
PleI	GAGTC	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	1051
Psp6I	CCWGG	2 cut(s)	697, 863
PspEI	GGTNACC	1 cut(s)	798
PspFI	CCCAGC	2 cut(s)	290, 988
PspGI	CCWGG	2 cut(s)	697, 863
PspN4I	GGNNCC	3 cut(s)	277, 1194, 1216
RsaI	GTAC	2 cut(s)	837, 1040
RsaNI	GTAC	2 cut(s)	836, 1039
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	767, 810
SatI	GCNGC	3 cut(s)	951, 1141, 1300
Sau3AI	GATC	4 cut(s)	145, 440, 666, 1089
SchI	GAGTC	1 cut(s)	1051
ScrFI	CCNGG	5 cut(s)	321, 699, 804, 865, 1062
SduI	GDGCHC	2 cut(s)	299, 943
SfaNI	GCATC	2 cut(s)	364, 523
SfcI	CTRYAG	3 cut(s)	351, 492, 1304
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	7 cut(s)	52, 107, 285, 729, 811, 932, 1130
SsiI	CCGC	5 cut(s)	356, 555, 850, 1140, 1300
SspI	AATATT	1 cut(s)	464
SspMI	CTAG	8 cut(s)	366, 378, 398, 413, 947, 1071, 1121, 1235
StyD4I	CCNGG	5 cut(s)	319, 697, 802, 863, 1060
TaaI	ACNGT	5 cut(s)	194, 471, 493, 1096, 1114
TasI	AATT	7 cut(s)	52, 107, 285, 729, 811, 932, 1130
TauI	GCSGC	2 cut(s)	1143, 1302
TfiI	GAWTC	1 cut(s)	1149
Tru1I	TTAA	2 cut(s)	767, 810
Tru9I	TTAA	2 cut(s)	767, 810
TscAI	CASTG	4 cut(s)	69, 197, 1099, 1261
TseFI	GTSAC	1 cut(s)	1237
TseI	GCWGC	1 cut(s)	950
Tsp45I	GTSAC	1 cut(s)	1237
TspDTI	ATGAA	4 cut(s)	245, 382, 396, 971
TspRI	CASTG	4 cut(s)	69, 197, 1099, 1261
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	8 cut(s)	366, 378, 398, 413, 947, 1071, 1121, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.