Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011467

Physical Location & Seq

Genomic Coordinates Forward (+)

18593404 .. 18594793

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16190.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCTCTTTTGGTTTTTGGGTGTCATGCCTCCGATCATGCTATATCATGTATTCTTGTGTTGTTGGGATCGTCAGGTGGAAGGAGGTTGGGTACTTGAAGGCCAAAAGCGATGGATAGGAAACAGTACATTTGCCGATGTCTTGATTATTTTTGCTAGGAATACAACAACAAATCAGATTAATGGATTTATAGTAAAGAAGAATGCCCCTGGACTGACAGCTACAAAAATAGAAAATAAAATTGGTTTACGCATTGTTCAAAATGGAGATATTCTCTTAAATAAAGTATTTGTTCCAGATGAGGAAAGGCTACCTAGTGTTAATTCTTTTCAGGATACTAACAAGTTTCTTGCTGTTTCGCGTGTCATGGTCGCCTGGCAACCTATTGGTTTATGTATGGGGGTCTATGATATGTGTCACAGGTATCTGAAGGAGAGGAAACAATTTGGAGCCCCTCTTGCAGCTTTCCAGATCAACCAAGAGAAACTTGTCCGTATGCTTGGTAATGTTCAAGCTATAGTTCTTATAGGTTGGTGCCTCTGCAAGCTGTATGAGGCGGGTAAAATGACTCCTGGTCATGCTAGCATGGGGAAGGTAGAAAAATATGACATCCTGATGCATTTAGTTATCCTATTGCTTATCCATTCAAAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

219

Amino Acids

24.86

Weight (kDa)

9.25

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51840
fragaria_vesca	FvH4_6g11280 FvH4_6g11280
malus_domestica	MD04G1155700.v1.1 MD12G1169900.v1.1
prunus_persica	Prupe.6G279200_v2.0.a1
pyrus_communis	pycom04g14050 pycom12g16190 pycom12g16220
rosa_chinensis	RchiOBHm_Chr3g0462821
rosa_laevigata	RLG00000024830
rosa_multiflora	Rmu_sc0000766.1_g000008 Rmu_sc0009174.1_g000003
rosa_roxburghii	Rroxscaffold_6G00417180
rosa_rugosa	Rorug03G0059400
rosa_samantha	Rh3AG117500 Rh3BG121300 Rh3CG124200 Rh3DG122900
rosa_wichuraiana	Rw3G009960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	534
AccII	CGCG	1 cut(s)	361
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	93, 127
AgsI	TTSAA	4 cut(s)	98, 260, 512, 648
AhdI	GACNNNNNGTC	1 cut(s)	573
AjnI	CCWGG	3 cut(s)	208, 374, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	4 cut(s)	221, 464, 515, 547
AluI	AGCT	4 cut(s)	221, 464, 515, 547
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	461
AseI	ATTAAT	1 cut(s)	180
AsuNHI	GCTAGC	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	1 cut(s)	105
BciT130I	CCWGG	3 cut(s)	210, 376, 573
BciVI	GTATCC	1 cut(s)	328
BfaI	CTAG	3 cut(s)	156, 315, 582
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	3 cut(s)	210, 376, 573
BmeRI	GACNNNNNGTC	1 cut(s)	573
BmiI	GGNNCC	2 cut(s)	451, 536
BmrFI	CCNGG	3 cut(s)	210, 376, 573
BmsI	GCATC	1 cut(s)	606
BmtI	GCTAGC	1 cut(s)	585
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
BseBI	CCWGG	3 cut(s)	210, 376, 573
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	609
BseXI	GCAGC	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	33, 67, 471
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	451, 536
BspOI	GCTAGC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	534
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	3 cut(s)	33, 67, 471
Bst2UI	CCWGG	3 cut(s)	210, 376, 573
Bst4CI	ACNGT	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	545, 583
BstF5I	GGATG	1 cut(s)	609
BstFNI	CGCG	1 cut(s)	361
BstKTI	GATC	3 cut(s)	36, 70, 474
BstMBI	GATC	3 cut(s)	33, 67, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	3 cut(s)	210, 376, 573
BstSCI	CCNGG	3 cut(s)	208, 374, 571
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	609
Cac8I	GCNNGC	2 cut(s)	545, 583
Csp6I	GTAC	2 cut(s)	92, 126
CviAII	CATG	6 cut(s)	25, 37, 47, 367, 578, 586
CviJI	RGCY	7 cut(s)	102, 221, 310, 452, 464, 515, 547
CviKI_1	RGCY	7 cut(s)	102, 221, 310, 452, 464, 515, 547
CviQI	GTAC	2 cut(s)	92, 126
DpnI	GATC	3 cut(s)	35, 69, 473
DpnII	GATC	3 cut(s)	33, 67, 471
DriI	GACNNNNNGTC	1 cut(s)	573
Eam1105I	GACNNNNNGTC	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	208, 374, 571
EcoT22I	ATGCAT	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	6 cut(s)	28, 40, 50, 370, 581, 589
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	6 cut(s)	24, 36, 46, 366, 577, 585
FauI	CCCGC	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	3 cut(s)	156, 315, 582
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	28, 40, 50, 370, 581, 589
HinfI	GANTC	1 cut(s)	568
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	3 cut(s)	33, 177, 429
Hpy188III	TCNNGA	5 cut(s)	142, 296, 332, 469, 613
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	4 cut(s)	74, 92, 424, 586
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	461, 543, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
Hsp92II	CATG	6 cut(s)	28, 40, 50, 370, 581, 589
Kzo9I	GATC	3 cut(s)	33, 67, 471
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	3 cut(s)	156, 315, 582
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	3 cut(s)	35, 69, 473
MboI	GATC	3 cut(s)	33, 67, 471
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	3 cut(s)	240, 322, 443
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	7 cut(s)	39, 77, 295, 429, 465, 547, 548
Mph1103I	ATGCAT	1 cut(s)	621
MseI	TTAA	3 cut(s)	180, 278, 321
MslI	CAYNNNNRTG	1 cut(s)	614
MspR9I	CCNGG	3 cut(s)	210, 376, 573
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	3 cut(s)	210, 376, 573
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	3 cut(s)	33, 67, 471
NheI	GCTAGC	1 cut(s)	581
NlaIII	CATG	6 cut(s)	28, 40, 50, 370, 581, 589
NlaIV	GGNNCC	2 cut(s)	451, 536
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	621
PctI	GAATGC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PshBI	ATTAAT	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	208, 374, 571
PspGI	CCWGG	3 cut(s)	208, 374, 571
PspN4I	GGNNCC	2 cut(s)	451, 536
RsaI	GTAC	2 cut(s)	93, 127
RsaNI	GTAC	2 cut(s)	92, 126
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	180, 278, 321
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	3 cut(s)	33, 67, 471
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	3 cut(s)	210, 376, 573
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	1 cut(s)	606
SfcI	CTRYAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	614
Sse9I	AATT	3 cut(s)	240, 322, 443
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	3 cut(s)	156, 315, 582
StyD4I	CCNGG	3 cut(s)	208, 374, 571
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	3 cut(s)	240, 322, 443
TatI	WGTACW	1 cut(s)	125
Tru1I	TTAA	3 cut(s)	180, 278, 321
Tru9I	TTAA	3 cut(s)	180, 278, 321
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	180
XspI	CTAG	3 cut(s)	156, 315, 582
Zsp2I	ATGCAT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.