Rroxscaffold_6G00417180

Acyl-coenzyme A oxidase 4

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
38992446 .. 38998487
6042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417180.1

Sequence Viewer

Length: 1440 bp
ATGGTCATCTACACCGTCTCGCCCAAAGTGATTCACACCTCCGTCAAAGAGTTCATGTCCCTCGTCCAACGCCTCACCGCCCTTCCTCCTCTCCCCCGTGACCTCTCCCCCACCGCCCGCCTCGCCTCCATTGAGAAAACTAGCCCCTCTTCCGATCGAAGCACTTCCCGCTCTGTAGATGATGCTAACAAAGCGAGGACTACTTATTTCAATTTACCTGCATTGGATGTCTCCCTTGCTTTCCCCAAGCAACTCCGGCGGCTATATTTCCTCCCTGCACACAATTTGGTACGCCGACATGTGAAAGCTTCCGACTATTATCAATCTAATGACCTATTGACGCCTGAGGAGCAGGCTCTCAGGATGAGAGTAAGACAGTCTGTAGAGAAAGAAGTAGCTCCAATCATGGCGGAGTATTGGGAGAAGGCAGCGTTTCCATTTCATATTATTCCAAAGCTTGGTGCCTTGCGAATTGCTGGGGGCACAATCAAGGGTTATGGGTGTCCCGGTCTTTCTATTACAGCAAGTGCTATTGCTACAGCAGAAGTTGCTAGAGTTGATGCTAGCTGTTCTACTTTCATCCTAGTTCATTCATCACTAGCAATGCTCACTATTGGTGAGAATTTGGAAAATCTTGCTTTGACTGAGCCTGACTATGGAAGTGATGCAAGTGCCTTGAAAACAACAGCGACAAAGGTGGAAGGAGGTTGGATGCTTGATGGCCAAAAGCGCTGGATAGGAAACGCTACCTTTGCTGATGTGTTGATTATTTTTGCTAGGAATACAACAACAAATCAGATCAATGGATATATAGTAAACAAGAATGTCCCTGGACTGAAAGCGACAAAAATAGAAAATAAAATTGGTTTGCGCATGGTTCAAAATGGAGATATTCTCTTAAAGCAAGTTTTTGTCCCTGATGAGGACAGGTTACCTGGTGTTACTTCTTTTCAGGATACCAACAAGGTACTTGCTGTTTCCCGTGTTATGGTTTCCTGGCAACCTATTGGTATATCTATGGGTGTCTATGATATGTGCCACAGGTATCTGAAGGAGAGGAAACAATTTGGAGCACCCCTAGCAGCTTTCCAAATCAACCAAGAGAAACTTGTTCATATGCTGGGTAATGTTCAAGCTATGATACTTATTGGTTGGCGCCTCTGCAAGTTGTATGAGACAGGTAAAATGACTCCGGGTCAGGCTAGCATGGGGAAGTCATGGATCACTGTGAAAGCAAGGGAAACTGTTGCTCTAGGGAGGGAATTGCTTGGCGGCAATGGAATCTTATCGGATTTTCTAGTTGCAAAGGCTTTCTGTGATTTGGAACCCATCTACACCTACGAAGGCACCTATGACATCAACAGCCTAGTCACAGGTAGGGAAATCACTGGGTTTGCCAGCTTCAAACCAGCTGCATTGAGCAAACGAAGCCGCCTGTAG

Protein Analysis

479

Amino Acids

52.88

Weight (kDa)

9.43

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 5 - 26 1.5e-08 VQ motif
Acyl-CoA_dh_N PF02771 114 - 205 1e-18 Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M PF02770 212 - 303 4.7e-21 Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1 PF00441 321 - 460 6.5e-24 Acyl-CoA dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011467)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 3 cut(s) 461, 1155, 1346
AccB7I CCANNNNNTGG 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 171
AciI CCGC 8 cut(s) 78, 114, 118, 169, 259, 410, 1272, 1432
AclWI GGATC 1 cut(s) 1229
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 1070
AcyI GRCGYC 2 cut(s) 341, 1156
AfaI GTAC 2 cut(s) 291, 969
AfeI AGCGCT 1 cut(s) 731
AfiI CCNNNNNNNGG 4 cut(s) 458, 656, 922, 988
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 5 cut(s) 211, 679, 881, 1133, 1405
AhdI GACNNNNNGTC 1 cut(s) 1194
AjnI CCWGG 3 cut(s) 829, 934, 995
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AluBI AGCT 8 cut(s) 308, 398, 457, 567, 1085, 1136, 1401, 1412
AluI AGCT 8 cut(s) 308, 398, 457, 567, 1085, 1136, 1401, 1412
Alw21I GWGCWC 1 cut(s) 1075
Alw26I GTCTC 3 cut(s) 22, 235, 1169
AlwI GGATC 1 cut(s) 1229
Aor51HI AGCGCT 1 cut(s) 731
AoxI GGCC 1 cut(s) 721
ApeKI GCWGC 3 cut(s) 428, 1082, 1412
ApoI RAATTY 1 cut(s) 622
Asp700I GAANNNNTTC 1 cut(s) 163
AspLEI GCGC 3 cut(s) 732, 873, 1158
AsuC2I CCSGG 2 cut(s) 507, 1194
AsuHPI GGTGA 2 cut(s) 67, 629
AsuNHI GCTAGC 2 cut(s) 563, 1202
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 485
BalI TGGCCA 1 cut(s) 723
BanI GGYRCC 3 cut(s) 461, 1155, 1346
Bbv12I GWGCWC 1 cut(s) 1075
BbvI GCAGC 3 cut(s) 440, 1094, 1399
BccI CCATC 2 cut(s) 713, 1337
BciT130I CCWGG 3 cut(s) 831, 936, 997
BciVI GTATCC 1 cut(s) 949
BcnI CCSGG 2 cut(s) 507, 1194
BcoDI GTCTC 3 cut(s) 22, 235, 1169
BfmI CTRYAG 4 cut(s) 174, 381, 537, 1436
BfoI RGCGCY 2 cut(s) 733, 1159
BfuAI ACCTGC 1 cut(s) 226
BfuI GTATCC 1 cut(s) 949
BisI GCNGC 6 cut(s) 260, 429, 1083, 1273, 1413, 1432
BlsI GCNGC 6 cut(s) 261, 430, 1084, 1274, 1414, 1433
Bme1390I CCNGG 5 cut(s) 507, 831, 936, 997, 1194
BmeRI GACNNNNNGTC 1 cut(s) 1194
BmiI GGNNCC 4 cut(s) 463, 1157, 1326, 1348
BmrFI CCNGG 5 cut(s) 507, 831, 936, 997, 1194
BmrI ACTGGG 1 cut(s) 1398
BmsI GCATC 4 cut(s) 172, 550, 655, 702
BmtI GCTAGC 2 cut(s) 567, 1206
BmuI ACTGGG 1 cut(s) 1398
BplI GAGNNNNNCTC 2 cut(s) 879, 911
BpuMI CCSGG 2 cut(s) 507, 1194
BsaHI GRCGYC 2 cut(s) 341, 1156
BsaJI CCNNGG 1 cut(s) 829
Bsc4I CCNNNNNNNGG 4 cut(s) 458, 656, 922, 988
Bse1I ACTGG 1 cut(s) 1393
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 2 cut(s) 609, 1282
BseBI CCWGG 3 cut(s) 831, 936, 997
BseDI CCNNGG 1 cut(s) 829
BseGI GGATG 4 cut(s) 232, 369, 579, 717
BseLI CCNNNNNNNGG 4 cut(s) 458, 656, 922, 988
BseMI GCAATG 2 cut(s) 609, 1282
BseMII CTCAG 3 cut(s) 336, 373, 636
BseNI ACTGG 1 cut(s) 1393
BseRI GAGGAG 2 cut(s) 78, 362
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 3 cut(s) 440, 1094, 1399
BseYI CCCAGC 2 cut(s) 476, 1120
BsgI GTGCAG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 723
BshNI GGYRCC 3 cut(s) 461, 1155, 1346
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 1075
BsiSI CCGG 3 cut(s) 256, 507, 1193
BslFI GGGAC 4 cut(s) 43, 489, 812, 899
BslI CCNNNNNNNGG 4 cut(s) 458, 656, 922, 988
BsmAI GTCTC 3 cut(s) 22, 235, 1169
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 4 cut(s) 43, 489, 812, 899
BsnI GGCC 1 cut(s) 723
Bsp1286I GDGCHC 2 cut(s) 485, 1075
Bsp143I GATC 3 cut(s) 154, 798, 1221
BspACI CCGC 8 cut(s) 78, 114, 118, 169, 259, 410, 1272, 1432
BspANI GGCC 1 cut(s) 723
BspCNI CTCAG 3 cut(s) 337, 372, 637
BspLI GGNNCC 4 cut(s) 463, 1157, 1326, 1348
BspMI ACCTGC 1 cut(s) 226
BspOI GCTAGC 2 cut(s) 567, 1206
BspPI GGATC 1 cut(s) 1229
BspT107I GGYRCC 3 cut(s) 461, 1155, 1346
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 609, 1282
BsrI ACTGG 1 cut(s) 1393
BssECI CCNNGG 1 cut(s) 829
BssMI GATC 3 cut(s) 154, 798, 1221
BssNI GRCGYC 2 cut(s) 341, 1156
Bst2UI CCWGG 3 cut(s) 831, 936, 997
Bst4CI ACNGT 4 cut(s) 16, 378, 1228, 1246
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 2 cut(s) 341, 1156
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 5 cut(s) 118, 354, 565, 1204, 1399
BstDEI CTNAG 3 cut(s) 345, 359, 645
BstEII GGTNACC 1 cut(s) 930
BstF5I GGATG 4 cut(s) 232, 369, 579, 717
BstH2I RGCGCY 2 cut(s) 733, 1159
BstHHI GCGC 3 cut(s) 732, 873, 1158
BstKTI GATC 3 cut(s) 157, 801, 1224
BstMAI GTCTC 3 cut(s) 22, 235, 1169
BstMBI GATC 3 cut(s) 154, 798, 1221
BstMCI CGRYCG 1 cut(s) 157
BstNI CCWGG 3 cut(s) 831, 936, 997
BstNSI RCATGY 1 cut(s) 302
BstPI GGTNACC 1 cut(s) 930
BstSCI CCNGG 5 cut(s) 505, 829, 934, 995, 1192
BstSFI CTRYAG 4 cut(s) 174, 381, 537, 1436
BstSLI GKGCMC 1 cut(s) 485
BstV1I GCAGC 3 cut(s) 440, 1094, 1399
Bsu36I CCTNAGG 1 cut(s) 345
BsuI GTATCC 1 cut(s) 949
BsuRI GGCC 1 cut(s) 723
BtsCI GGATG 4 cut(s) 232, 369, 579, 717
BtsIMutI CAGTG 2 cut(s) 1224, 1386
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 5 cut(s) 118, 354, 565, 1204, 1399
CfoI GCGC 3 cut(s) 732, 873, 1158
CseI GACGC 1 cut(s) 349
CsiI ACCWGGT 1 cut(s) 934
Csp6I GTAC 2 cut(s) 290, 968
CviAII CATG 6 cut(s) 55, 299, 406, 874, 1207, 1218
CviQI GTAC 2 cut(s) 290, 968
DdeI CTNAG 3 cut(s) 345, 359, 645
DinI GGCGCC 1 cut(s) 1157
DpnI GATC 3 cut(s) 156, 800, 1223
DpnII GATC 3 cut(s) 154, 798, 1221
DriI GACNNNNNGTC 1 cut(s) 1194
EaeI YGGCCR 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 154
Eam1105I GACNNNNNGTC 1 cut(s) 1194
EarI CTCTTC 1 cut(s) 154
EciI GGCGGA 1 cut(s) 425
Eco47III AGCGCT 1 cut(s) 731
Eco57I CTGAAG 1 cut(s) 1070
Eco81I CCTNAGG 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 930
EcoO65I GGTNACC 1 cut(s) 930
EcoRII CCWGG 3 cut(s) 829, 934, 995
EgeI GGCGCC 1 cut(s) 1157
EheI GGCGCC 1 cut(s) 1157
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 6 cut(s) 58, 302, 409, 877, 1210, 1221
FalI AAGNNNNNCTT 2 cut(s) 1092, 1124
FaqI GGGAC 4 cut(s) 43, 489, 812, 899
FatI CATG 6 cut(s) 54, 298, 405, 873, 1206, 1217
FauI CCCGC 2 cut(s) 125, 176
FauNDI CATATG 1 cut(s) 1116
Fnu4HI GCNGC 6 cut(s) 260, 429, 1083, 1273, 1413, 1432
FokI GGATG 4 cut(s) 239, 376, 566, 724
Fsp4HI GCNGC 6 cut(s) 260, 429, 1083, 1273, 1413, 1432
FspI TGCGCA 1 cut(s) 872
GlaI GCGC 3 cut(s) 731, 872, 1157
GluI GCNGC 6 cut(s) 260, 429, 1083, 1273, 1413, 1432
GsaI CCCAGC 2 cut(s) 480, 1124
HaeII RGCGCY 2 cut(s) 733, 1159
HaeIII GGCC 1 cut(s) 723
HapII CCGG 3 cut(s) 256, 507, 1193
HgaI GACGC 1 cut(s) 349
HhaI GCGC 3 cut(s) 732, 873, 1158
Hin1I GRCGYC 2 cut(s) 341, 1156
Hin1II CATG 6 cut(s) 58, 302, 409, 877, 1210, 1221
Hin6I GCGC 3 cut(s) 730, 871, 1156
HinP1I GCGC 3 cut(s) 730, 871, 1156
HindIII AAGCTT 2 cut(s) 306, 455
HinfI GANTC 3 cut(s) 31, 1189, 1281
HpaII CCGG 3 cut(s) 256, 507, 1193
HphI GGTGA 2 cut(s) 67, 629
Hpy166II GTNNAC 1 cut(s) 817
Hpy188I TCNGA 5 cut(s) 154, 313, 798, 1050, 1291
Hpy188III TCNNGA 2 cut(s) 361, 953
Hpy8I GTNNAC 1 cut(s) 817
HpyAV CCTTC 5 cut(s) 92, 418, 695, 1045, 1337
HpyCH4III ACNGT 4 cut(s) 16, 378, 1228, 1246
HpyCH4V TGCA 6 cut(s) 221, 278, 668, 1164, 1304, 1415
HpyF3I CTNAG 3 cut(s) 345, 359, 645
Hsp92I GRCGYC 2 cut(s) 341, 1156
Hsp92II CATG 6 cut(s) 58, 302, 409, 877, 1210, 1221
HspAI GCGC 3 cut(s) 730, 871, 1156
KasI GGCGCC 1 cut(s) 1155
Kzo9I GATC 3 cut(s) 154, 798, 1221
LmnI GCTCC 3 cut(s) 349, 403, 1070
Lsp1109I GCAGC 3 cut(s) 440, 1094, 1399
LweI GCATC 4 cut(s) 172, 550, 655, 702
MabI ACCWGGT 1 cut(s) 934
MaeIII GTNAC 4 cut(s) 98, 930, 940, 1369
MalI GATC 3 cut(s) 156, 800, 1223
MbiI CCGCTC 1 cut(s) 171
MboI GATC 3 cut(s) 154, 798, 1221
MboII GAAGA 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 485, 1075
MlsI TGGCCA 1 cut(s) 723
MluCI AATT 7 cut(s) 211, 283, 471, 622, 861, 1064, 1262
MluNI TGGCCA 1 cut(s) 723
Mly113I GGCGCC 1 cut(s) 1156
MlyI GAGTC 1 cut(s) 1183
MmeI TCCRAC 3 cut(s) 91, 336, 689
Mox20I TGGCCA 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 163
MscI TGGCCA 1 cut(s) 723
MseI TTAA 1 cut(s) 899
Msp20I TGGCCA 1 cut(s) 723
MspA1I CMGCKG 1 cut(s) 1412
MspI CCGG 3 cut(s) 256, 507, 1193
MspR9I CCNGG 5 cut(s) 507, 831, 936, 997, 1194
MvaI CCWGG 3 cut(s) 831, 936, 997
NarI GGCGCC 1 cut(s) 1156
NciI CCSGG 2 cut(s) 507, 1194
NdeI CATATG 1 cut(s) 1116
NdeII GATC 3 cut(s) 154, 798, 1221
NheI GCTAGC 2 cut(s) 563, 1202
NlaIII CATG 6 cut(s) 58, 302, 409, 877, 1210, 1221
NlaIV GGNNCC 4 cut(s) 463, 1157, 1326, 1348
NmuCI GTSAC 2 cut(s) 98, 1369
NsbI TGCGCA 1 cut(s) 872
NspI RCATGY 1 cut(s) 302
PciI ACATGT 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 31, 1281
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 6 cut(s) 261, 430, 1084, 1274, 1414, 1433
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 1183
PluTI GGCGCC 1 cut(s) 1159
PpsI GAGTC 1 cut(s) 1183
PscI ACATGT 1 cut(s) 298
Psp6I CCWGG 3 cut(s) 829, 934, 995
PspEI GGTNACC 1 cut(s) 930
PspFI CCCAGC 2 cut(s) 476, 1120
PspGI CCWGG 3 cut(s) 829, 934, 995
PspN4I GGNNCC 4 cut(s) 463, 1157, 1326, 1348
PvuI CGATCG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 2 cut(s) 291, 969
RsaNI GTAC 2 cut(s) 290, 968
SaqAI TTAA 1 cut(s) 899
SatI GCNGC 6 cut(s) 260, 429, 1083, 1273, 1413, 1432
Sau3AI GATC 3 cut(s) 154, 798, 1221
SchI GAGTC 1 cut(s) 1183
ScrFI CCNGG 5 cut(s) 507, 831, 936, 997, 1194
SduI GDGCHC 2 cut(s) 485, 1075
SexAI ACCWGGT 1 cut(s) 934
SfaNI GCATC 4 cut(s) 172, 550, 655, 702
SfcI CTRYAG 4 cut(s) 174, 381, 537, 1436
SfoI GGCGCC 1 cut(s) 1157
Sse9I AATT 7 cut(s) 211, 283, 471, 622, 861, 1064, 1262
SsiI CCGC 8 cut(s) 78, 114, 118, 169, 259, 410, 1272, 1432
SspDI GGCGCC 1 cut(s) 1155
StyD4I CCNGG 5 cut(s) 505, 829, 934, 995, 1192
TaaI ACNGT 4 cut(s) 16, 378, 1228, 1246
TaqI TCGA 1 cut(s) 157
TasI AATT 7 cut(s) 211, 283, 471, 622, 861, 1064, 1262
TauI GCSGC 3 cut(s) 262, 1275, 1434
TfiI GAWTC 2 cut(s) 31, 1281
Tru1I TTAA 1 cut(s) 899
Tru9I TTAA 1 cut(s) 899
TscAI CASTG 2 cut(s) 1231, 1393
TseFI GTSAC 2 cut(s) 98, 1369
TseI GCWGC 3 cut(s) 428, 1082, 1412
Tsp45I GTSAC 2 cut(s) 98, 1369
TspDTI ATGAA 6 cut(s) 43, 431, 568, 578, 582, 1103
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 2 cut(s) 1231, 1393
Van91I CCANNNNNTGG 1 cut(s) 458
XapI RAATTY 1 cut(s) 622
XceI RCATGY 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.