Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009617

Physical Location & Seq

Genomic Coordinates Reverse (-)

19349600 .. 19353728

Gene Structure 4129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAATTGTCTTCAGAATCTTCCCAGATGTTCAGTCTCACCTCTGCTGGGATTCGGGTGCATTCAAAGAGATCATTCTTCTTCTTCTTCTTCTTTGAAGATGCTAATATCGCCTCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACATGCAGTATCAGAGTCAAAATCCAGCTCAGAGATGAGTGGTGTTGCAAAGGATGAAGAGAAATCTGATGAATATAGCCAAGACATGACTCAAGCTATGGGTGCTGTTCTAACTTACAGGCACGAGTTAGGAATGAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAGACCCCTGAAGATGTTGACAAGCTTCGTAAAATTGGAGTTAAAACCATATTTTGCTTGCAACAAGATCCAGACCTGGAATATTTTGGAGTAGACATAAGCAGCATCCAAGCCTATGCTAAGAAATATAGTGATATTCAGCATATTCGCTGTGAAATTAGAGACTTTGATGCATTTGATTTGAGAATGCGTCTTCCAGCCGTGGTTGGTACTCTTTACAAAGCTGTTAAGCGAAATGGAGGAGTTACATATGTGCACTGCACTGCTGGAATGGGAAGGGCTCCTGCTGTTGCGTTGACATACATGTTCTGGGTGCAAGGCTATAAGCTTATGGAAGCTCATAAATTACTTATGAGCAAAAGGTCGTGCTTTCCGAAGCTGGATGCTATCAGAAATGCAACAATTGATATTCTTACAGGACTCAAGAGGAAGACTGTTACTCTGACACTGAAAGATAAGGGGTTCTCCAGAGTAGAAATTTCTGGCCTTGACATTGGATGGGGACAGAGGATACCTCTAACACTGGACAAGGGAACAGGATTCTGGATCCTAAAGAGAGAACTGCCTGAAGGACAGTTTGAATATAAATACATCATAGATGGTGAATGGACACACAATGAGGCCGAACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAAAGTAGTGGACGATCCAACAAGTGTGGATGGTACAACTCGGGAGAGACTATCGAGCGAAGACCCTGAGCTGTTGGAGGAAGAACGCTCGAAACTAATCCAGTTCTTGGAGACTTGTTCTGAGGCAGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097367 GO:1901575 GO:2001066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

379

Amino Acids

42.63

Weight (kDa)

6.12

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	102 - 243	3e-08	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	150 - 235	2.7e-12	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52180 AT3G52180 AT3G52180 AT3G52180
fragaria_vesca	FvH4_7g06850 FvH4_7g06850
malus_domestica	MD15G1312700.v1.1
prunus_persica	Prupe.2G096100_v2.0.a1 Prupe.2G096100_v2.0.a1
pyrus_communis	pycom01g06680 pycom15g27630
rosa_chinensis	RchiOBHm_Chr1g0336591
rosa_laevigata	RLG00000029350
rosa_multiflora	Rmu_sc0002196.1_g000002 Rmu_sc0031975.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315480
rosa_rugosa	Rorug01G0126700
rosa_samantha	Rh1AG147900 Rh1BG115700 Rh1CG139300 Rh1DG154300
rosa_wichuraiana	Rw1G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1111
AccI	GTMKAC	1 cut(s)	426
AclWI	GGATC	7 cut(s)	125, 318, 331, 395, 874, 887, 1013
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	1 cut(s)	810
AcuI	CTGAAG	2 cut(s)	363, 921
AfaI	GTAC	2 cut(s)	544, 1039
AfiI	CCNNNNNNNGG	3 cut(s)	47, 968, 1111
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	65, 97, 914
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	8 cut(s)	180, 248, 358, 557, 661, 671, 712, 1075
AluI	AGCT	8 cut(s)	180, 248, 358, 557, 661, 671, 712, 1075
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	4 cut(s)	40, 489, 1045, 1109
Alw44I	GTGCAC	1 cut(s)	587
AlwI	GGATC	7 cut(s)	125, 318, 331, 395, 874, 887, 1013
Ama87I	CYCGRG	1 cut(s)	1044
AoxI	GGCC	3 cut(s)	817, 954, 985
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	1 cut(s)	435
ApoI	RAATTY	1 cut(s)	810
AspS9I	GGNCC	1 cut(s)	971
AsuHPI	GGTGA	2 cut(s)	30, 947
AvaI	CYCGRG	1 cut(s)	1044
AvaII	GGWCC	1 cut(s)	971
BaeGI	GKGCMC	1 cut(s)	591
BamHI	GGATCC	2 cut(s)	323, 879
BanII	GRGCYC	1 cut(s)	616
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	4 cut(s)	2, 518, 770, 1071
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	3 cut(s)	825, 926, 1028
BceAI	ACGGC	2 cut(s)	518, 1000
BciT130I	CCWGG	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	837
BcoDI	GTCTC	4 cut(s)	40, 489, 1045, 1109
BfuI	GTATCC	1 cut(s)	837
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	437
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	971
BmeT110I	CYCGRG	1 cut(s)	1044
BmgT120I	GGNCC	1 cut(s)	971
BmiI	GGNNCC	3 cut(s)	325, 615, 881
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	4 cut(s)	90, 447, 493, 706
BpiI	GAAGAC	4 cut(s)	2, 518, 770, 1071
BplI	GAGNNNNNCTC	2 cut(s)	832, 864
BpmI	CTGGAG	1 cut(s)	784
Bpu10I	CCTNAGC	1 cut(s)	1071
BpuEI	CTTGAG	2 cut(s)	228, 740
BsaJI	CCNNGG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 968, 1111
Bse1I	ACTGG	2 cut(s)	861, 1105
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	5 cut(s)	211, 438, 721, 836, 1039
BseLI	CCNNNNNNNGG	3 cut(s)	47, 968, 1111
BseMII	CTCAG	3 cut(s)	195, 1062, 1116
BseNI	ACTGG	2 cut(s)	861, 1105
BseRI	GAGGAG	1 cut(s)	588
BseSI	GKGCMC	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	447
BseYI	CCCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	577
BshFI	GGCC	3 cut(s)	819, 956, 987
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	1044
BslFI	GGGAC	1 cut(s)	849
BslI	CCNNNNNNNGG	3 cut(s)	47, 968, 1111
BsmAI	GTCTC	4 cut(s)	40, 489, 1045, 1109
BsmFI	GGGAC	1 cut(s)	849
BsmI	GAATGC	2 cut(s)	60, 525
BsnI	GGCC	3 cut(s)	819, 956, 987
BsoBI	CYCGRG	1 cut(s)	1044
Bsp1286I	GDGCHC	2 cut(s)	591, 616
Bsp143I	GATC	8 cut(s)	70, 117, 130, 310, 323, 400, 879, 1018
BspANI	GGCC	3 cut(s)	819, 956, 987
BspCNI	CTCAG	3 cut(s)	194, 1063, 1117
BspLI	GGNNCC	3 cut(s)	325, 615, 881
BspPI	GGATC	7 cut(s)	125, 318, 331, 395, 874, 887, 1013
BsrI	ACTGG	2 cut(s)	861, 1105
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	8 cut(s)	70, 117, 130, 310, 323, 400, 879, 1018
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	769, 909, 963
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	4 cut(s)	181, 453, 1071, 1125
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	5 cut(s)	211, 438, 721, 836, 1039
BstKTI	GATC	8 cut(s)	73, 120, 133, 313, 326, 403, 882, 1021
BstMAI	GTCTC	4 cut(s)	40, 489, 1045, 1109
BstMBI	GATC	8 cut(s)	70, 117, 130, 310, 323, 400, 879, 1018
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 254
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	2 cut(s)	158, 640
BstSCI	CCNGG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	447
BstV2I	GAAGAC	4 cut(s)	2, 518, 770, 1071
BstX2I	RGATCY	4 cut(s)	310, 323, 400, 879
BstYI	RGATCY	4 cut(s)	310, 323, 400, 879
BsuI	GTATCC	1 cut(s)	837
BsuRI	GGCC	3 cut(s)	819, 956, 987
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	5 cut(s)	211, 438, 721, 836, 1039
BtsI	GCAGTG	2 cut(s)	589, 594
BtsIMutI	CAGTG	4 cut(s)	589, 594, 779, 854
Cac8I	GCNNGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	971
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	543, 1038
CspCI	CAANNNNNGTGG	2 cut(s)	1011, 1046
CviAII	CATG	3 cut(s)	155, 238, 637
CviQI	GTAC	2 cut(s)	543, 1038
DdeI	CTNAG	4 cut(s)	181, 453, 1071, 1125
DpnI	GATC	8 cut(s)	72, 119, 132, 312, 325, 402, 881, 1020
DpnII	GATC	8 cut(s)	70, 117, 130, 310, 323, 400, 879, 1018
EaeI	YGGCCR	1 cut(s)	985
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	971
Eco57I	CTGAAG	2 cut(s)	363, 921
Eco88I	CYCGRG	1 cut(s)	1044
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRII	CCWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	616
FaeI	CATG	3 cut(s)	158, 241, 640
FaqI	GGGAC	1 cut(s)	849
FatI	CATG	3 cut(s)	154, 237, 636
FauNDI	CATATG	1 cut(s)	583
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	436
FokI	GGATG	5 cut(s)	218, 425, 728, 843, 1046
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	1 cut(s)	436
GluI	GCNGC	1 cut(s)	436
GsaI	CCCAGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	784
HaeIII	GGCC	3 cut(s)	819, 956, 987
HgaI	GACGC	1 cut(s)	512
Hin1II	CATG	3 cut(s)	158, 241, 640
HincII	GTYRAC	2 cut(s)	352, 630
HindII	GTYRAC	2 cut(s)	352, 630
HindIII	AAGCTT	2 cut(s)	356, 659
HinfI	GANTC	6 cut(s)	16, 51, 167, 241, 753, 873
HphI	GGTGA	2 cut(s)	30, 947
Hpy166II	GTNNAC	5 cut(s)	352, 427, 589, 630, 1015
Hpy188I	TCNGA	9 cut(s)	15, 117, 166, 184, 220, 708, 725, 777, 1126
Hpy188III	TCNNGA	7 cut(s)	141, 308, 404, 757, 801, 877, 1046
Hpy8I	GTNNAC	5 cut(s)	352, 427, 589, 630, 1015
HpyAV	CCTTC	2 cut(s)	603, 896
HpyCH4III	ACNGT	3 cut(s)	769, 909, 963
HpyCH4V	TGCA	9 cut(s)	60, 158, 200, 394, 506, 589, 594, 649, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 254
HpyF3I	CTNAG	4 cut(s)	181, 453, 1071, 1125
Hsp92II	CATG	3 cut(s)	158, 241, 640
Kzo9I	GATC	8 cut(s)	70, 117, 130, 310, 323, 400, 879, 1018
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	1 cut(s)	447
LweI	GCATC	4 cut(s)	90, 447, 493, 706
MaeIII	GTNAC	2 cut(s)	577, 769
MalI	GATC	8 cut(s)	72, 119, 132, 312, 325, 402, 881, 1020
MboI	GATC	8 cut(s)	70, 117, 130, 310, 323, 400, 879, 1018
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	4 cut(s)	310, 323, 400, 879
MhlI	GDGCHC	2 cut(s)	591, 616
MluCI	AATT	8 cut(s)	4, 315, 366, 489, 677, 735, 810, 997
MlyI	GAGTC	3 cut(s)	176, 235, 747
MmeI	TCCRAC	3 cut(s)	301, 1046, 1059
MnlI	CCTC	9 cut(s)	51, 123, 566, 753, 834, 858, 946, 1075, 1120
Mph1103I	ATGCAT	1 cut(s)	508
MseI	TTAA	2 cut(s)	375, 561
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	2 cut(s)	60, 525
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	109, 254
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	8 cut(s)	70, 117, 130, 310, 323, 400, 879, 1018
NlaIII	CATG	3 cut(s)	158, 241, 640
NlaIV	GGNNCC	3 cut(s)	325, 615, 881
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	2 cut(s)	158, 640
PciI	ACATGT	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	704
PctI	GAATGC	2 cut(s)	60, 525
PfeI	GAWTC	3 cut(s)	16, 51, 873
PflMI	CCANNNNNTGG	1 cut(s)	1111
PkrI	GCNGC	1 cut(s)	437
PleI	GAGTC	3 cut(s)	175, 235, 747
PpsI	GAGTC	3 cut(s)	175, 235, 747
PpuMI	RGGWCCY	1 cut(s)	971
PscI	ACATGT	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	3 cut(s)	325, 615, 881
PspPI	GGNCC	1 cut(s)	971
PspPPI	RGGWCCY	1 cut(s)	971
PsuI	RGATCY	4 cut(s)	310, 323, 400, 879
RsaI	GTAC	2 cut(s)	544, 1039
RsaNI	GTAC	2 cut(s)	543, 1038
SaqAI	TTAA	2 cut(s)	375, 561
SatI	GCNGC	1 cut(s)	436
Sau3AI	GATC	8 cut(s)	70, 117, 130, 310, 323, 400, 879, 1018
Sau96I	GGNCC	1 cut(s)	971
SchI	GAGTC	3 cut(s)	176, 235, 747
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	591, 616
SfaNI	GCATC	4 cut(s)	90, 447, 493, 706
SinI	GGWCC	1 cut(s)	971
SmlI	CTYRAG	2 cut(s)	243, 755
SmoI	CTYRAG	2 cut(s)	243, 755
Sse9I	AATT	8 cut(s)	4, 315, 366, 489, 677, 735, 810, 997
SspI	AATATT	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	769, 909, 963
TaqI	TCGA	3 cut(s)	142, 1058, 1094
TasI	AATT	8 cut(s)	4, 315, 366, 489, 677, 735, 810, 997
TfiI	GAWTC	3 cut(s)	16, 51, 873
Tru1I	TTAA	2 cut(s)	375, 561
Tru9I	TTAA	2 cut(s)	375, 561
TscAI	CASTG	4 cut(s)	596, 601, 786, 861
TseI	GCWGC	1 cut(s)	435
TspDTI	ATGAA	4 cut(s)	17, 222, 237, 302
TspRI	CASTG	4 cut(s)	596, 601, 786, 861
Van91I	CCANNNNNTGG	1 cut(s)	1111
VneI	GTGCAC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	971
XapI	RAATTY	1 cut(s)	810
XceI	RCATGY	2 cut(s)	158, 640
XmiI	GTMKAC	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.