Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009617

Physical Location & Seq

Genomic Coordinates Reverse (-)

36952450 .. 36960288

Gene Structure 7839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAACTGTCTCCAGAATCTTCCAGGGTCCTCTGTTTTGCCGCTGCGGGGTTTCGTATGCAATCCCAGGAAGCCGTCCTTCTCCTCCGCCACTACTAGTCTGGGAATGATGAGTAGTAATACCGATCTACCCAGAAGTATGGCTGTCAAGGCAGTTTCTGGTTCCACTCCCAGTGCTGAGACAAGTGGTGCTGAAGTGAAGGAGGAAAAATCTGAGGTATATAGTAATGTCATGACCGAGGCCATGGGTGCTGTCCTGACCTATAGGCATGAGCTGGGTATGAACTACAACTTCATACGTCCAGATCTGATTGTGGGGTCTTGCCTTCAGACTCCAAAAGATGTTGACAAGCTTCGCAGCATTGGAGTGAAGACTATTTTCTGCTTGCAACAAAATTCAGATTTGGAATATTTTGGGGTCGACATTGGTGCCATTATAGAGTATGCCAAAGAATTTGATGACATTGAACACTTGCGTGCTGAAATAAGGGACTTTGATTCATATGATCTACGTCTCCGGCTTCCTGCTGTTGTTAGTAAATTATATAAGGCCATAAACAGAAATGGAGGTGTCACTTATGTACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTACTGCGTTGGCTTACATGTTCTGGGTACAAGGATACAAACTTGAAGATGCGGTCAAATTACTTCTGGGCAAACGTTCATGCTTCCCAAAACTGGAGGCTATAAAAACCGCAACTGCTGATATTCTCACAGGCATGACAAAAAAGCCAGTCACGTTGACATGGGGCGGTAATAATTGCTCTACTGTGGAAATCTCTGGACTTGATATCGGATGGGGTCAGAGGATACCTTTAGAGTTTGATGACAAACAGAGTTCATGGGTTCTTAAGAGGGAATTGCCGGAAGGACGATATGAATATAAGTACATTATTGATGGTGAATGGACACACAATAAAAATGAGCTTGTCGCCTCTGCAAACAAGGATGGTCATGTCAACAATTATGTTCAGGTTGAGGATGATCCTAACAGTGTTAATGCCATCATTAGGAAGAGATTGATGGGTGATGATCCTGATCTAACAACACACGAAAGACTTAAAATCAGACAGTTTCTTGAAGCTTATTGCAGTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097367 GO:1901575 GO:2001066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

377

Amino Acids

41.93

Weight (kDa)

5.82

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	101 - 220	6.7e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	145 - 233	1.6e-10	Dual specificity phosphatase, catalytic domain
AMPK1_CBM	PF16561	254 - 338	2.5e-19	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52180 AT3G52180 AT3G52180 AT3G52180
fragaria_vesca	FvH4_7g06850 FvH4_7g06850
malus_domestica	MD15G1312700.v1.1
prunus_persica	Prupe.2G096100_v2.0.a1 Prupe.2G096100_v2.0.a1
pyrus_communis	pycom01g06680 pycom15g27630
rosa_chinensis	RchiOBHm_Chr1g0336591
rosa_laevigata	RLG00000029350
rosa_multiflora	Rmu_sc0002196.1_g000002 Rmu_sc0031975.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315480
rosa_rugosa	Rorug01G0126700
rosa_samantha	Rh1AG147900 Rh1BG115700 Rh1CG139300 Rh1DG154300
rosa_wichuraiana	Rw1G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	6 cut(s)	41, 46, 87, 665, 723, 780
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	2 cut(s)	1007, 1055
AcsI	RAATTY	2 cut(s)	394, 452
AcuI	CTGAAG	2 cut(s)	213, 311
AfaI	GTAC	3 cut(s)	582, 642, 917
AfiI	CCNNNNNNNGG	3 cut(s)	47, 706, 1038
AflII	CTTAAG	1 cut(s)	878
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	467, 659, 1109
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	22, 65
AleI	CACNNNNGTG	1 cut(s)	474
AluBI	AGCT	5 cut(s)	274, 352, 608, 955, 1112
AluI	AGCT	5 cut(s)	274, 352, 608, 955, 1112
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	3 cut(s)	14, 173, 518
AlwI	GGATC	2 cut(s)	1007, 1055
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	240, 549
ApeKI	GCWGC	2 cut(s)	43, 357
ApoI	RAATTY	2 cut(s)	394, 452
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	941, 1067
AvaII	GGWCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	2 cut(s)	30, 369
BccI	CCATC	5 cut(s)	819, 920, 971, 1040, 1045
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	2 cut(s)	24, 67
BciVI	GTATCC	2 cut(s)	641, 831
BcoDI	GTCTC	3 cut(s)	14, 173, 518
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	262
BfrI	CTTAAG	1 cut(s)	878
BfuI	GTATCC	2 cut(s)	641, 831
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	3 cut(s)	41, 44, 358
BlsI	GCNGC	3 cut(s)	42, 45, 359
Bme1390I	CCNGG	2 cut(s)	24, 67
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	28, 163, 430
BmrFI	CCNGG	2 cut(s)	24, 67
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaJI	CCNNGG	4 cut(s)	23, 65, 237, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 706, 1038
Bse1I	ACTGG	3 cut(s)	171, 711, 761
Bse3DI	GCAATG	1 cut(s)	583
Bse8I	GATNNNNATC	1 cut(s)	1065
BseBI	CCWGG	2 cut(s)	24, 67
BseDI	CCNNGG	4 cut(s)	23, 65, 237, 243
BseGI	GGATG	3 cut(s)	830, 982, 1015
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	3 cut(s)	47, 706, 1038
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	2 cut(s)	168, 204
BseNI	ACTGG	3 cut(s)	171, 711, 761
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	30, 369
BseYI	CCCAGC	1 cut(s)	274
BshFI	GGCC	2 cut(s)	242, 551
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	517, 893
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	47, 706, 1038
BsmAI	GTCTC	3 cut(s)	14, 173, 518
BsmBI	CGTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	242, 551
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp1407I	TGTACA	1 cut(s)	580
Bsp143I	GATC	6 cut(s)	124, 304, 505, 1012, 1060, 1066
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	6 cut(s)	41, 46, 87, 665, 723, 780
BspANI	GGCC	2 cut(s)	242, 551
BspCNI	CTCAG	2 cut(s)	169, 205
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	28, 163, 430
BspPI	GGATC	2 cut(s)	1007, 1055
BspQI	GCTCTTC	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	583
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	3 cut(s)	171, 711, 761
BssECI	CCNNGG	4 cut(s)	23, 65, 237, 243
BssMI	GATC	6 cut(s)	124, 304, 505, 1012, 1060, 1066
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	24, 67
Bst4CI	ACNGT	4 cut(s)	8, 799, 1022, 1101
Bst6I	CTCTTC	2 cut(s)	598, 1037
BstAFI	CTTAAG	1 cut(s)	878
BstAUI	TGTACA	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	386, 477
BstDEI	CTNAG	2 cut(s)	177, 213
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	830, 982, 1015
BstKTI	GATC	6 cut(s)	127, 307, 508, 1015, 1063, 1069
BstMAI	GTCTC	3 cut(s)	14, 173, 518
BstMBI	GATC	6 cut(s)	124, 304, 505, 1012, 1060, 1066
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 248
BstNI	CCWGG	2 cut(s)	24, 67
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	2 cut(s)	22, 65
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	30, 369
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	2 cut(s)	641, 831
BsuRI	GGCC	2 cut(s)	242, 551
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	830, 982, 1015
BtsI	GCAGTG	2 cut(s)	588, 1126
BtsIMutI	CAGTG	4 cut(s)	178, 588, 1027, 1126
Cac8I	GCNNGC	2 cut(s)	386, 477
CaiI	CAGNNNCTG	1 cut(s)	158
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	3 cut(s)	581, 641, 916
CviAII	CATG	9 cut(s)	232, 244, 269, 631, 693, 748, 774, 870, 983
CviQI	GTAC	3 cut(s)	581, 641, 916
DdeI	CTNAG	2 cut(s)	177, 213
DpnI	GATC	6 cut(s)	126, 306, 507, 1014, 1062, 1068
DpnII	GATC	6 cut(s)	124, 304, 505, 1012, 1060, 1066
Eam1104I	CTCTTC	2 cut(s)	598, 1037
EarI	CTCTTC	2 cut(s)	598, 1037
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	610
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	608
Eco57I	CTGAAG	2 cut(s)	213, 311
EcoICRI	GAGCTC	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	22, 65
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	9 cut(s)	235, 247, 272, 634, 696, 751, 777, 873, 986
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	9 cut(s)	231, 243, 268, 630, 692, 747, 773, 869, 982
FauI	CCCGC	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	41, 44, 358
FokI	GGATG	3 cut(s)	837, 989, 1022
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	3 cut(s)	41, 44, 358
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	3 cut(s)	41, 44, 358
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	2 cut(s)	242, 551
HapII	CCGG	2 cut(s)	517, 893
Hin1II	CATG	9 cut(s)	235, 247, 272, 634, 696, 751, 777, 873, 986
HincII	GTYRAC	4 cut(s)	346, 421, 771, 988
HindII	GTYRAC	4 cut(s)	346, 421, 771, 988
HindIII	AAGCTT	2 cut(s)	350, 1110
HinfI	GANTC	3 cut(s)	16, 331, 497
HpaII	CCGG	2 cut(s)	517, 893
HphI	GGTGA	2 cut(s)	941, 1067
Hpy166II	GTNNAC	4 cut(s)	346, 421, 771, 988
Hpy188I	TCNGA	7 cut(s)	214, 309, 330, 400, 824, 834, 1097
Hpy188III	TCNNGA	7 cut(s)	13, 232, 256, 302, 810, 1064, 1106
Hpy8I	GTNNAC	4 cut(s)	346, 421, 771, 988
HpyAV	CCTTC	4 cut(s)	88, 193, 335, 890
HpyCH4III	ACNGT	4 cut(s)	8, 799, 1022, 1101
HpyCH4IV	ACGT	4 cut(s)	298, 511, 688, 767
HpyCH4V	TGCA	5 cut(s)	60, 388, 588, 968, 1119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 248
HpyF3I	CTNAG	2 cut(s)	177, 213
HpySE526I	ACGT	4 cut(s)	298, 511, 688, 767
Hsp92II	CATG	9 cut(s)	235, 247, 272, 634, 696, 751, 777, 873, 986
Kzo9I	GATC	6 cut(s)	124, 304, 505, 1012, 1060, 1066
LguI	GCTCTTC	1 cut(s)	598
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	2 cut(s)	30, 369
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	4 cut(s)	298, 511, 688, 767
MaeIII	GTNAC	2 cut(s)	571, 763
MalI	GATC	6 cut(s)	126, 306, 507, 1014, 1062, 1068
MboI	GATC	6 cut(s)	124, 304, 505, 1012, 1060, 1066
MboII	GAAGA	5 cut(s)	11, 382, 615, 671, 1054
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	7 cut(s)	394, 452, 539, 671, 787, 887, 991
MlyI	GAGTC	1 cut(s)	325
MseI	TTAA	3 cut(s)	879, 1026, 1089
MslI	CAYNNNNRTG	3 cut(s)	365, 474, 746
MspA1I	CMGCKG	1 cut(s)	43
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	2 cut(s)	517, 893
MspR9I	CCNGG	2 cut(s)	24, 67
MvaI	CCWGG	2 cut(s)	24, 67
MwoI	GCNNNNNNNGC	2 cut(s)	149, 248
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	6 cut(s)	124, 304, 505, 1012, 1060, 1066
NlaIII	CATG	9 cut(s)	235, 247, 272, 634, 696, 751, 777, 873, 986
NlaIV	GGNNCC	3 cut(s)	28, 163, 430
NmuCI	GTSAC	2 cut(s)	571, 763
NspI	RCATGY	1 cut(s)	634
OliI	CACNNNNGTG	1 cut(s)	474
PagI	TCATGA	1 cut(s)	231
PciI	ACATGT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	598
PfeI	GAWTC	2 cut(s)	16, 497
PkrI	GCNGC	3 cut(s)	42, 45, 359
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	610
Psp1406I	AACGTT	1 cut(s)	688
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	22, 65
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	2 cut(s)	22, 65
PspN4I	GGNNCC	3 cut(s)	28, 163, 430
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	3 cut(s)	582, 642, 917
RsaNI	GTAC	3 cut(s)	581, 641, 916
RseI	CAYNNNNRTG	3 cut(s)	365, 474, 746
SacI	GAGCTC	1 cut(s)	610
SalI	GTCGAC	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	598
SaqAI	TTAA	3 cut(s)	879, 1026, 1089
SatI	GCNGC	3 cut(s)	41, 44, 358
Sau3AI	GATC	6 cut(s)	124, 304, 505, 1012, 1060, 1066
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	24, 67
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	3 cut(s)	365, 474, 746
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	7 cut(s)	394, 452, 539, 671, 787, 887, 991
SsiI	CCGC	6 cut(s)	41, 46, 87, 665, 723, 780
SspI	AATATT	1 cut(s)	410
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	22, 65
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	4 cut(s)	8, 799, 1022, 1101
TaiI	ACGT	4 cut(s)	301, 514, 691, 770
TaqI	TCGA	1 cut(s)	420
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	7 cut(s)	394, 452, 539, 671, 787, 887, 991
TatI	WGTACW	2 cut(s)	580, 915
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	16, 497
Tru1I	TTAA	3 cut(s)	879, 1026, 1089
Tru9I	TTAA	3 cut(s)	879, 1026, 1089
TscAI	CASTG	4 cut(s)	178, 595, 1027, 1126
TseFI	GTSAC	2 cut(s)	571, 763
TseI	GCWGC	2 cut(s)	43, 357
Tsp45I	GTSAC	2 cut(s)	571, 763
TspDTI	ATGAA	7 cut(s)	17, 283, 296, 489, 681, 858, 921
TspRI	CASTG	4 cut(s)	178, 595, 1027, 1126
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	2 cut(s)	394, 452
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.