Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031975.1

Orthogroup ID

OG0009617

Physical Location & Seq

Genomic Coordinates Reverse (-)

13324 .. 17885

Gene Structure 4562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031975.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgaactgtctccagaatcttccagggtcctctgttttgccgctgcggggtttcgtctgcaatcccaggaagccgtccttctcctcctcctcctccgccgccactagtctgggaatgatgactattaataccgatctacccagaagcatggctgtcaaggcagtgtctggttccactcccagtgctgagacaagtggtgctgaagtgaaagaggaaaaatctgaggtatatagtaatgtcatgaccgaggccatgggtgctgtcctgacctataggcatgagctgggtatgaactacaacttcatacgtccagatctgattgtggggtcttgccttcagactccaaaagatgttgacaagcttcgcagcattggagtgaagactattttctgcttgcaacaaaattcagatttggaatattttggggtcgacattggtgccattatagagtatgccaaagaatttgatgacattgaacacttgcgtgctgaaataagggactttgattcatatgatctacgtctccggcttcctgctgttgttagtaaattatataaggccataaacagaaatggaggtgtcacttatgtgcattgcactgctggacttggaagagctcctgctactgcgttggcttacatgttctgggtacaaggatacaaacttgaagatgcggtcaaattacttctgagcaaacgttcatgcttcccaaaactggaggctataaaaaccgcaactgctgatattctcacaggcatgacaaaaaagccagtcacgttgacatggggcggtaataattgctctactgtggaaatctctggacttgatatcggatggggccaggtaatgatcttttttattgcagttgaaaagttgcttgactgtctaccctcagtgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097367 GO:1901575 GO:2001066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

300

Amino Acids

32.84

Weight (kDa)

6.82

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52180 AT3G52180 AT3G52180 AT3G52180
fragaria_vesca	FvH4_7g06850 FvH4_7g06850
malus_domestica	MD15G1312700.v1.1
prunus_persica	Prupe.2G096100_v2.0.a1 Prupe.2G096100_v2.0.a1
pyrus_communis	pycom01g06680 pycom15g27630
rosa_chinensis	RchiOBHm_Chr1g0336591
rosa_laevigata	RLG00000029350
rosa_multiflora	Rmu_sc0002196.1_g000002 Rmu_sc0031975.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315480
rosa_rugosa	Rorug01G0126700
rosa_samantha	Rh1AG147900 Rh1BG115700 Rh1CG139300 Rh1DG154300
rosa_wichuraiana	Rw1G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	2 cut(s)	429, 886
AciI	CCGC	7 cut(s)	41, 46, 96, 99, 674, 732, 789
AclI	AACGTT	1 cut(s)	697
AcsI	RAATTY	2 cut(s)	403, 461
AcuI	CTGAAG	2 cut(s)	222, 320
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	2 cut(s)	47, 715
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	476, 668, 869
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	3 cut(s)	22, 65, 840
AleI	CACNNNNGTG	2 cut(s)	483, 587
AluBI	AGCT	3 cut(s)	283, 361, 617
AluI	AGCT	3 cut(s)	283, 361, 617
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	3 cut(s)	14, 182, 527
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	3 cut(s)	249, 558, 838
ApeKI	GCWGC	2 cut(s)	43, 366
ApoI	RAATTY	2 cut(s)	403, 461
AseI	ATTAAT	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	27, 838
AvaII	GGWCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	2 cut(s)	30, 378
BccI	CCATC	1 cut(s)	828
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	3 cut(s)	24, 67, 842
BciVI	GTATCC	1 cut(s)	650
BcoDI	GTCTC	3 cut(s)	14, 182, 527
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	650
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	4 cut(s)	41, 44, 99, 367
BlsI	GCNGC	4 cut(s)	42, 45, 100, 368
Bme1390I	CCNGG	3 cut(s)	24, 67, 842
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	27, 838
BmiI	GGNNCC	4 cut(s)	28, 172, 439, 839
BmrFI	CCNGG	3 cut(s)	24, 67, 842
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	661
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	737
BsaJI	CCNNGG	4 cut(s)	23, 65, 246, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 715
Bse1I	ACTGG	3 cut(s)	180, 720, 770
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	3 cut(s)	24, 67, 842
BseDI	CCNNGG	4 cut(s)	23, 65, 246, 252
BseGI	GGATG	1 cut(s)	839
BseLI	CCNNNNNNNGG	2 cut(s)	47, 715
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	3 cut(s)	177, 213, 680
BseNI	ACTGG	3 cut(s)	180, 720, 770
BseRI	GAGGAG	4 cut(s)	73, 76, 79, 82
BseXI	GCAGC	2 cut(s)	30, 378
BseYI	CCCAGC	1 cut(s)	283
BshFI	GGCC	3 cut(s)	251, 560, 840
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	526
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	47, 715
BsmAI	GTCTC	3 cut(s)	14, 182, 527
BsmBI	CGTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	3 cut(s)	251, 560, 840
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	4 cut(s)	133, 313, 514, 849
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	7 cut(s)	41, 46, 96, 99, 674, 732, 789
BspANI	GGCC	3 cut(s)	251, 560, 840
BspCNI	CTCAG	3 cut(s)	178, 214, 681
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	4 cut(s)	28, 172, 439, 839
BspQI	GCTCTTC	1 cut(s)	607
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	3 cut(s)	180, 720, 770
BssECI	CCNNGG	4 cut(s)	23, 65, 246, 252
BssMI	GATC	4 cut(s)	133, 313, 514, 849
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	24, 67, 842
Bst4CI	ACNGT	3 cut(s)	8, 808, 884
Bst6I	CTCTTC	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	395, 486
BstDEI	CTNAG	4 cut(s)	186, 222, 689, 892
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	839
BstKTI	GATC	4 cut(s)	136, 316, 517, 852
BstMAI	GTCTC	3 cut(s)	14, 182, 527
BstMBI	GATC	4 cut(s)	133, 313, 514, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 257
BstNI	CCWGG	3 cut(s)	24, 67, 842
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	3 cut(s)	22, 65, 840
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	30, 378
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	2 cut(s)	109, 148
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	650
BsuRI	GGCC	3 cut(s)	251, 560, 840
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	839
BtsI	GCAGTG	2 cut(s)	168, 597
BtsIMutI	CAGTG	4 cut(s)	168, 187, 597, 900
Cac8I	GCNNGC	2 cut(s)	395, 486
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	27, 838
Csp6I	GTAC	1 cut(s)	650
CviAII	CATG	8 cut(s)	148, 241, 253, 278, 640, 702, 757, 783
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	4 cut(s)	186, 222, 689, 892
DpnI	GATC	4 cut(s)	135, 315, 516, 851
DpnII	GATC	4 cut(s)	133, 313, 514, 849
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	619
Eco32I	GATATC	1 cut(s)	829
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	617
Eco57I	CTGAAG	2 cut(s)	222, 320
EcoICRI	GAGCTC	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	3 cut(s)	22, 65, 840
EcoRV	GATATC	1 cut(s)	829
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	527
FaeI	CATG	8 cut(s)	151, 244, 256, 281, 643, 705, 760, 786
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	8 cut(s)	147, 240, 252, 277, 639, 701, 756, 782
FauI	CCCGC	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	511
FblI	GTMKAC	2 cut(s)	429, 886
Fnu4HI	GCNGC	4 cut(s)	41, 44, 99, 367
FokI	GGATG	1 cut(s)	846
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	4 cut(s)	41, 44, 99, 367
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	4 cut(s)	41, 44, 99, 367
GsaI	CCCAGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	3 cut(s)	251, 560, 840
HapII	CCGG	1 cut(s)	526
Hin1II	CATG	8 cut(s)	151, 244, 256, 281, 643, 705, 760, 786
HincII	GTYRAC	3 cut(s)	355, 430, 780
HindII	GTYRAC	3 cut(s)	355, 430, 780
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	3 cut(s)	16, 340, 506
HpaII	CCGG	1 cut(s)	526
Hpy166II	GTNNAC	4 cut(s)	355, 430, 780, 887
Hpy188I	TCNGA	6 cut(s)	223, 318, 339, 409, 690, 833
Hpy188III	TCNNGA	5 cut(s)	13, 241, 265, 311, 819
Hpy8I	GTNNAC	4 cut(s)	355, 430, 780, 887
HpyAV	CCTTC	2 cut(s)	88, 344
HpyCH4III	ACNGT	3 cut(s)	8, 808, 884
HpyCH4IV	ACGT	4 cut(s)	307, 520, 697, 776
HpyCH4V	TGCA	5 cut(s)	60, 397, 592, 597, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 257
HpyF3I	CTNAG	4 cut(s)	186, 222, 689, 892
HpySE526I	ACGT	4 cut(s)	307, 520, 697, 776
Hsp92II	CATG	8 cut(s)	151, 244, 256, 281, 643, 705, 760, 786
Kzo9I	GATC	4 cut(s)	133, 313, 514, 849
LguI	GCTCTTC	1 cut(s)	607
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	30, 378
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	4 cut(s)	307, 520, 697, 776
MaeIII	GTNAC	2 cut(s)	580, 772
MalI	GATC	4 cut(s)	135, 315, 516, 851
MboI	GATC	4 cut(s)	133, 313, 514, 849
MboII	GAAGA	4 cut(s)	11, 391, 624, 680
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	5 cut(s)	403, 461, 548, 680, 796
MlyI	GAGTC	1 cut(s)	334
MseI	TTAA	2 cut(s)	126, 901
MslI	CAYNNNNRTG	4 cut(s)	374, 483, 587, 755
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	3 cut(s)	24, 67, 842
MvaI	CCWGG	3 cut(s)	24, 67, 842
MwoI	GCNNNNNNNGC	2 cut(s)	158, 257
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	4 cut(s)	133, 313, 514, 849
NlaIII	CATG	8 cut(s)	151, 244, 256, 281, 643, 705, 760, 786
NlaIV	GGNNCC	4 cut(s)	28, 172, 439, 839
NmuCI	GTSAC	2 cut(s)	580, 772
NspI	RCATGY	1 cut(s)	643
OliI	CACNNNNGTG	2 cut(s)	483, 587
PagI	TCATGA	1 cut(s)	240
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	16, 506
PkrI	GCNGC	4 cut(s)	42, 45, 100, 368
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	1 cut(s)	639
PshBI	ATTAAT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	619
Psp1406I	AACGTT	1 cut(s)	697
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	3 cut(s)	22, 65, 840
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	3 cut(s)	22, 65, 840
PspN4I	GGNNCC	4 cut(s)	28, 172, 439, 839
PspPI	GGNCC	2 cut(s)	27, 838
PspPPI	RGGWCCY	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
RseI	CAYNNNNRTG	4 cut(s)	374, 483, 587, 755
SacI	GAGCTC	1 cut(s)	619
SalI	GTCGAC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	607
SaqAI	TTAA	2 cut(s)	126, 901
SatI	GCNGC	4 cut(s)	41, 44, 99, 367
Sau3AI	GATC	4 cut(s)	133, 313, 514, 849
Sau96I	GGNCC	2 cut(s)	27, 838
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	3 cut(s)	24, 67, 842
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	4 cut(s)	374, 483, 587, 755
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	5 cut(s)	403, 461, 548, 680, 796
SsiI	CCGC	7 cut(s)	41, 46, 96, 99, 674, 732, 789
SspI	AATATT	1 cut(s)	419
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	619
StyD4I	CCNGG	3 cut(s)	22, 65, 840
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	8, 808, 884
TaiI	ACGT	4 cut(s)	310, 523, 700, 779
TaqI	TCGA	1 cut(s)	429
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	5 cut(s)	403, 461, 548, 680, 796
TauI	GCSGC	2 cut(s)	43, 101
TfiI	GAWTC	2 cut(s)	16, 506
Tru1I	TTAA	2 cut(s)	126, 901
Tru9I	TTAA	2 cut(s)	126, 901
TscAI	CASTG	4 cut(s)	168, 187, 604, 900
TseFI	GTSAC	2 cut(s)	580, 772
TseI	GCWGC	2 cut(s)	43, 366
Tsp45I	GTSAC	2 cut(s)	580, 772
TspDTI	ATGAA	5 cut(s)	17, 292, 305, 498, 690
TspRI	CASTG	4 cut(s)	168, 187, 604, 900
VpaK11BI	GGWCC	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	2 cut(s)	403, 461
XceI	RCATGY	1 cut(s)	643
XmiI	GTMKAC	2 cut(s)	429, 886
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.