Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009617

Physical Location & Seq

Genomic Coordinates Reverse (-)

6862662 .. 6869014

Gene Structure 6353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAACTGTCTCCAGAATCTTCCAGGCTCCTCTGTTTTGCCGCTCCGGGGTTTCGTCTGCAATCCCCGCAAGCCTTCCGCCAATACTTGTCTGGGAATGATGAGCAGTAACACTGATCTACCCAGAAGCATGGCGCTCAAGGCAATTCCTGGTTCTACGCCCAGTGCTGAGACAAGTGGTGCTGAAGTGAAAGAGGAAAAATCTGAGATATATAGTAATACCATGACAGAAGCCATGGGTGCTGTCTTGACCTATAGGCATGAGCTGGGTATGAACTACAACTTCATACGTCCAGATGTGATTGTGGGGTCATGCCTTCAGACTCCTAAAGATGTTGACAAGCTTCGCAGCATTGGAGTGAAGACTATTTTCTGCTTGCAACAAAATTCTGATTTGGAATACTTTGGGGTTGACATTGGTGCCATTCAAGAGTATGCTAAAGAATTTGATGACATTGAACACTTGCGTGCTGAAATAAGGGACTTTGATTCATATGATCTACGTCTCCGGCTTCCCGCTGTTGTTAGTAAATTATATAAGGCCATAAACCGAAATGGAGGTGTCAGTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTACTGTGTTGGCTTACATGTTCTGGTTACAGGGATACAAACTTGATGATGCAGTCAATTTACTGCTGAGCAAACGTTCATGCTTCCCCAAACTGGATGCTATAAAAAACGCAACTGCTGATATTCTTACAGGCATGAAAAAAAAGGCAGTCACGTTGACATGGCGTGGTCATAATTGCTCTACAGTTGAAATATCTGGACTTGATATTGGATGGGGACAGAGGATACCTTTGGAGTTTGATGACAAGCTGGGTTCATGGATTCTTAAAAGGGAATTACCGGAAGGACGATACGAATATAAGTATATTGTTGATGGTGAATGGACAATCAATAAAAATGAGCCCGTCACCTCTGCAAACAAGGACGGTCATGTCAACAATTATGTTGAGATTGTTGAAGATGATGCTAACAGTCCTAATGCCATCATAAGGAAGAGGTTGACGGGTGATGATCCTGATCTAACGACAGACGAAAGACTTAAAATCAGACAGTTCCTTGAAGCTTGTCCCACTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097367 GO:1901575 GO:2001066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

375

Amino Acids

41.79

Weight (kDa)

5.59

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	145 - 230	2.5e-10	Dual specificity phosphatase, catalytic domain
AMPK1_CBM	PF16561	252 - 336	1.1e-19	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52180 AT3G52180 AT3G52180 AT3G52180
fragaria_vesca	FvH4_7g06850 FvH4_7g06850
malus_domestica	MD15G1312700.v1.1
prunus_persica	Prupe.2G096100_v2.0.a1 Prupe.2G096100_v2.0.a1
pyrus_communis	pycom01g06680 pycom15g27630
rosa_chinensis	RchiOBHm_Chr1g0336591
rosa_laevigata	RLG00000029350
rosa_multiflora	Rmu_sc0002196.1_g000002 Rmu_sc0031975.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315480
rosa_rugosa	Rorug01G0126700
rosa_samantha	Rh1AG147900 Rh1BG115700 Rh1CG139300 Rh1DG154300
rosa_wichuraiana	Rw1G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	974
AccB1I	GGYRCC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	4 cut(s)	41, 67, 78, 516
AclI	AACGTT	1 cut(s)	679
AclWI	GGATC	1 cut(s)	1049
AcsI	RAATTY	2 cut(s)	385, 443
AcuI	CTGAAG	2 cut(s)	204, 302
AfiI	CCNNNNNNNGG	3 cut(s)	47, 697, 1032
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	5 cut(s)	428, 458, 794, 1001, 1103
AjnI	CCWGG	2 cut(s)	22, 148
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	5 cut(s)	265, 343, 599, 853, 1106
AluI	AGCT	5 cut(s)	265, 343, 599, 853, 1106
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	3 cut(s)	14, 164, 509
AlwI	GGATC	1 cut(s)	1049
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	1 cut(s)	348
ApoI	RAATTY	2 cut(s)	385, 443
AspLEI	GCGC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	932, 943, 1061
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	601, 948
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	3 cut(s)	810, 911, 1034
BciT130I	CCWGG	2 cut(s)	24, 150
BciVI	GTATCC	2 cut(s)	632, 822
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	14, 164, 509
BfmI	CTRYAG	2 cut(s)	253, 786
BfoI	RGCGCY	1 cut(s)	137
BfuI	GTATCC	2 cut(s)	632, 822
BisI	GCNGC	2 cut(s)	41, 349
BlpI	GCTNAGC	1 cut(s)	671
BlsI	GCNGC	2 cut(s)	42, 350
Bme1390I	CCNGG	3 cut(s)	24, 47, 150
BmiI	GGNNCC	2 cut(s)	28, 421
BmrFI	CCNGG	3 cut(s)	24, 47, 150
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	643, 691, 997
BmuI	ACTGGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaJI	CCNNGG	2 cut(s)	46, 234
BsaWI	WCCGGW	1 cut(s)	883
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 697, 1032
Bse1I	ACTGG	2 cut(s)	162, 702
Bse3DI	GCAATG	1 cut(s)	574
Bse8I	GATNNNNATC	1 cut(s)	1059
BseBI	CCWGG	2 cut(s)	24, 150
BseDI	CCNNGG	2 cut(s)	46, 234
BseGI	GGATG	2 cut(s)	706, 821
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	3 cut(s)	47, 697, 1032
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	3 cut(s)	159, 195, 662
BseNI	ACTGG	2 cut(s)	162, 702
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	360
BseYI	CCCAGC	2 cut(s)	265, 853
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	3 cut(s)	46, 508, 884
BslFI	GGGAC	3 cut(s)	494, 834, 1095
BslI	CCNNNNNNNGG	3 cut(s)	47, 697, 1032
BsmAI	GTCTC	3 cut(s)	14, 164, 509
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	3 cut(s)	494, 834, 1095
BsnI	GGCC	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	601, 948
Bsp143I	GATC	4 cut(s)	115, 496, 1054, 1060
Bsp1720I	GCTNAGC	1 cut(s)	671
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	4 cut(s)	41, 67, 78, 516
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	3 cut(s)	160, 196, 663
BspLI	GGNNCC	2 cut(s)	28, 421
BspPI	GGATC	1 cut(s)	1049
BspQI	GCTCTTC	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	162, 702
BssECI	CCNNGG	2 cut(s)	46, 234
BssMI	GATC	4 cut(s)	115, 496, 1054, 1060
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	24, 150
Bst4CI	ACNGT	6 cut(s)	8, 610, 790, 971, 1016, 1095
Bst6I	CTCTTC	2 cut(s)	589, 1031
BstC8I	GCNNGC	3 cut(s)	71, 377, 468
BstDEI	CTNAG	3 cut(s)	168, 204, 671
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	706, 821
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	118, 499, 1057, 1063
BstMAI	GTCTC	3 cut(s)	14, 164, 509
BstMBI	GATC	4 cut(s)	115, 496, 1054, 1060
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 140, 239
BstNI	CCWGG	2 cut(s)	24, 150
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	3 cut(s)	22, 45, 148
BstSFI	CTRYAG	2 cut(s)	253, 786
BstV1I	GCAGC	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuI	GTATCC	2 cut(s)	632, 822
BsuRI	GGCC	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	706, 821
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	4 cut(s)	111, 169, 579, 1113
Cac8I	GCNNGC	3 cut(s)	71, 377, 468
CfoI	GCGC	1 cut(s)	136
DdeI	CTNAG	3 cut(s)	168, 204, 671
DpnI	GATC	4 cut(s)	117, 498, 1056, 1062
DpnII	GATC	4 cut(s)	115, 496, 1054, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	974
DseDI	GACNNNNNNGTC	1 cut(s)	974
Eam1104I	CTCTTC	2 cut(s)	589, 1031
EarI	CTCTTC	2 cut(s)	589, 1031
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	2 cut(s)	601, 948
Eco53kI	GAGCTC	1 cut(s)	599
Eco57I	CTGAAG	2 cut(s)	204, 302
EcoICRI	GAGCTC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	22, 148
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	601, 948
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	509
FaqI	GGGAC	3 cut(s)	494, 834, 1095
FauI	CCCGC	2 cut(s)	74, 523
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	41, 349
FokI	GGATG	2 cut(s)	713, 828
FriOI	GRGCYC	2 cut(s)	601, 948
Fsp4HI	GCNGC	2 cut(s)	41, 349
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	2 cut(s)	41, 349
GsaI	CCCAGC	2 cut(s)	269, 857
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	3 cut(s)	46, 508, 884
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	5 cut(s)	337, 412, 762, 979, 1044
HindII	GTYRAC	5 cut(s)	337, 412, 762, 979, 1044
HindIII	AAGCTT	2 cut(s)	341, 1104
HinfI	GANTC	4 cut(s)	16, 322, 488, 865
HpaII	CCGG	3 cut(s)	46, 508, 884
HphI	GGTGA	3 cut(s)	932, 943, 1061
Hpy166II	GTNNAC	5 cut(s)	337, 412, 762, 979, 1044
Hpy188I	TCNGA	4 cut(s)	205, 321, 391, 1091
Hpy188III	TCNNGA	6 cut(s)	13, 247, 293, 428, 801, 1058
Hpy8I	GTNNAC	5 cut(s)	337, 412, 762, 979, 1044
HpyAV	CCTTC	3 cut(s)	84, 326, 881
HpyCH4III	ACNGT	6 cut(s)	8, 610, 790, 971, 1016, 1095
HpyCH4IV	ACGT	4 cut(s)	289, 502, 679, 758
HpyCH4V	TGCA	5 cut(s)	60, 379, 579, 656, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 140, 239
HpyF3I	CTNAG	3 cut(s)	168, 204, 671
HpySE526I	ACGT	4 cut(s)	289, 502, 679, 758
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	115, 496, 1054, 1060
LguI	GCTCTTC	1 cut(s)	589
LmnI	GCTCC	3 cut(s)	32, 48, 604
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	3 cut(s)	643, 691, 997
MaeII	ACGT	4 cut(s)	289, 502, 679, 758
MaeIII	GTNAC	4 cut(s)	107, 630, 754, 949
MalI	GATC	4 cut(s)	117, 498, 1056, 1062
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	4 cut(s)	115, 496, 1054, 1060
MboII	GAAGA	5 cut(s)	11, 373, 606, 1013, 1048
MhlI	GDGCHC	2 cut(s)	601, 948
MluCI	AATT	8 cut(s)	144, 385, 443, 530, 661, 778, 878, 982
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	6 cut(s)	40, 187, 551, 819, 964, 1032
MseI	TTAA	2 cut(s)	870, 1083
MslI	CAYNNNNRTG	2 cut(s)	356, 465
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	3 cut(s)	46, 508, 884
MspR9I	CCNGG	3 cut(s)	24, 47, 150
MvaI	CCWGG	2 cut(s)	24, 150
MwoI	GCNNNNNNNGC	3 cut(s)	66, 140, 239
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	4 cut(s)	115, 496, 1054, 1060
NlaIV	GGNNCC	2 cut(s)	28, 421
NmuCI	GTSAC	2 cut(s)	754, 949
NspI	RCATGY	1 cut(s)	625
OliI	CACNNNNGTG	1 cut(s)	465
PciI	ACATGT	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	589
PfeI	GAWTC	3 cut(s)	16, 488, 865
PkrI	GCNGC	2 cut(s)	42, 350
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PscI	ACATGT	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	601
Psp1406I	AACGTT	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	22, 148
PspFI	CCCAGC	2 cut(s)	265, 853
PspGI	CCWGG	2 cut(s)	22, 148
PspN4I	GGNNCC	2 cut(s)	28, 421
RseI	CAYNNNNRTG	2 cut(s)	356, 465
SacI	GAGCTC	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	589
SaqAI	TTAA	2 cut(s)	870, 1083
SatI	GCNGC	2 cut(s)	41, 349
Sau3AI	GATC	4 cut(s)	115, 496, 1054, 1060
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	3 cut(s)	24, 47, 150
SduI	GDGCHC	2 cut(s)	601, 948
SfaNI	GCATC	3 cut(s)	643, 691, 997
SfcI	CTRYAG	2 cut(s)	253, 786
SmiMI	CAYNNNNRTG	2 cut(s)	356, 465
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	8 cut(s)	144, 385, 443, 530, 661, 778, 878, 982
SsiI	CCGC	4 cut(s)	41, 67, 78, 516
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	3 cut(s)	22, 45, 148
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	6 cut(s)	8, 610, 790, 971, 1016, 1095
TaiI	ACGT	4 cut(s)	292, 505, 682, 761
TasI	AATT	8 cut(s)	144, 385, 443, 530, 661, 778, 878, 982
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	16, 488, 865
Tru1I	TTAA	2 cut(s)	870, 1083
Tru9I	TTAA	2 cut(s)	870, 1083
TscAI	CASTG	4 cut(s)	118, 169, 586, 1120
TseFI	GTSAC	2 cut(s)	754, 949
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	2 cut(s)	754, 949
TspDTI	ATGAA	7 cut(s)	17, 274, 287, 480, 672, 755, 849
TspRI	CASTG	4 cut(s)	118, 169, 586, 1120
XapI	RAATTY	2 cut(s)	385, 443
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.