Rroxscaffold_4G00315480

Phosphoglucan phosphatase DSP4

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
39787373 .. 39797352
9980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315480.1

Sequence Viewer

Length: 1203 bp
ATGGGGAGGTGCGCAAGGCCGAGGCGAAGCTACCCCGAAAATTTCATGACCTATGGTGGCCGGAGGAGGAAGAAACGGCGGAAAGAAGGAAAGAGGTCCTCTGTTTTGCCGCTGCGGGGTTTCGTATGCAATCCCAGGAAGCCGTCCTTCTCCTCCGCCACTACTAGTCTGGGAATGATGACTAGTAATACCGATCTACCCAGAAGCATGGCTGTCAAGGTATCTGCTGAAAACTTTCATCAAGATTTTAGTGTTTTCTCTATTAGAGTAATTGAGGATGAGCAGAATGCTTTTCACATAATCAGTTTGTTTGAGTTGTCAATTTCTGGTTCCACTCCCAGTGCTGAGACAAGTGGTGCTGAAGTGAAGGAGGAAAAATCTGAGGTCTATAGTCATGTCATGACTGAGGCCATGGGTGCTGTCCTGACCTATAGGCATGAGTTGGGTATGAACTACAACTTCATACGTCCAGATCTGATTGTGGGGTCTTGCCTTCAGACTCCAAAAGATGTTGACAAGCTTCGCAGCATTGGAGTGAAGACTATTTTCTGCTTGCAACAAAATTCAGATTTGGAATATTTTGGGGTCGACATTGGTGCCATTATAGAGTATGCCAAAGAATTTGATGACATTGAACACTTGCGTGCTGAAATAAGGGACTTTGATTCATATGATCTACGTCTCCGGCTTCCTGCTGTTGTTAGTAAATTATATAAGGCCATAAACAGAAATGGAGGTGTCACTTATGTACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGCTGCGTTGGCTTACATGTTCTGGGTACAAGGATACAAACTTGAAGATGCGGTCAAATTACTTCTGGGCAAACGTTCATGCTTCCCAAAACTGGAGGCTATAAAAACTGCAACTGCTGATATTAGGATACCTTTAGAGTTTGATGACAAACAGAGTTCATGGATTCTTAAGAGGGAATTGCCGGAAGGACTATATGAATATAAGTACATTATTGATGGTGAATGGACACACAATAAAAATGAGCTTGTCACCTCTGCAAACAAGGATGGTCATGTCAACAATTATGTTCAGGTTGAGGATGATCCTAACAGTGTTAATGCCATCATAAGGAAGAGATTGATGGGTGATGATCCTGATCTAACAACACACGAAAGACTTAAAATCAGACAGTTTCTTGAAGCTTACTGCAGTGATGAATGA

Protein Analysis

400

Amino Acids

45.49

Weight (kDa)

7.6

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSPc PF00782 201 - 289 2e-10 Dual specificity phosphatase, catalytic domain
AMPK1_CBM PF16561 303 - 362 6.5e-12 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 596
AccI GTMKAC 1 cut(s) 588
AciI CCGC 5 cut(s) 79, 110, 115, 156, 833
AclI AACGTT 1 cut(s) 856
AclWI GGATC 2 cut(s) 1079, 1127
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 3 cut(s) 40, 562, 620
AcuI CTGAAG 2 cut(s) 381, 479
AfaI GTAC 3 cut(s) 750, 810, 989
AfiI CCNNNNNNNGG 3 cut(s) 116, 874, 1110
AflII CTTAAG 1 cut(s) 950
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 3 cut(s) 635, 827, 1181
AhlI ACTAGT 2 cut(s) 164, 182
AjnI CCWGG 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 642
AluBI AGCT 5 cut(s) 30, 520, 776, 1027, 1184
AluI AGCT 5 cut(s) 30, 520, 776, 1027, 1184
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 2 cut(s) 341, 686
AlwI GGATC 2 cut(s) 1079, 1127
AoxI GGCC 4 cut(s) 17, 58, 408, 717
ApeKI GCWGC 4 cut(s) 112, 525, 782, 785
ApoI RAATTY 3 cut(s) 40, 562, 620
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 3 cut(s) 1013, 1024, 1139
AvaII GGWCC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 596
BanII GRGCYC 1 cut(s) 778
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 4 cut(s) 99, 537, 769, 772
BccI CCATC 4 cut(s) 992, 1043, 1112, 1117
BceAI ACGGC 2 cut(s) 92, 127
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 1 cut(s) 136
BciVI GTATCC 2 cut(s) 809, 903
BcoDI GTCTC 2 cut(s) 341, 686
BcuI ACTAGT 2 cut(s) 164, 182
BfaI CTAG 2 cut(s) 165, 183
BfmI CTRYAG 3 cut(s) 388, 430, 1189
BfrI CTTAAG 1 cut(s) 950
BfuI GTATCC 2 cut(s) 809, 903
BglII AGATCT 1 cut(s) 472
BisI GCNGC 5 cut(s) 110, 113, 526, 783, 786
BlsI GCNGC 5 cut(s) 111, 114, 527, 784, 787
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 2 cut(s) 331, 598
BmrFI CCNGG 1 cut(s) 136
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 820
BmuI ACTGGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 896
BsaBI GATNNNNATC 1 cut(s) 1137
BsaJI CCNNGG 3 cut(s) 20, 134, 411
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 874, 1110
Bse1I ACTGG 2 cut(s) 339, 879
Bse3DI GCAATG 1 cut(s) 751
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 20, 134, 411
BseGI GGATG 3 cut(s) 283, 1054, 1087
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 3 cut(s) 116, 874, 1110
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 3 cut(s) 336, 372, 396
BseNI ACTGG 2 cut(s) 339, 879
BseRI GAGGAG 2 cut(s) 79, 142
BseXI GCAGC 4 cut(s) 99, 537, 769, 772
BshFI GGCC 4 cut(s) 19, 60, 410, 719
BshNI GGYRCC 1 cut(s) 596
BsiHKAI GWGCWC 1 cut(s) 778
BsiSI CCGG 3 cut(s) 61, 685, 965
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 3 cut(s) 116, 874, 1110
BsmAI GTCTC 2 cut(s) 341, 686
BsmBI CGTCTC 1 cut(s) 686
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 4 cut(s) 19, 60, 410, 719
Bsp1286I GDGCHC 1 cut(s) 778
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 6 cut(s) 193, 472, 673, 1084, 1132, 1138
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 5 cut(s) 79, 110, 115, 156, 833
BspANI GGCC 4 cut(s) 19, 60, 410, 719
BspCNI CTCAG 3 cut(s) 337, 373, 397
BspHI TCATGA 2 cut(s) 45, 399
BspLI GGNNCC 2 cut(s) 331, 598
BspMAI CTGCAG 1 cut(s) 1193
BspPI GGATC 2 cut(s) 1079, 1127
BspQI GCTCTTC 1 cut(s) 766
BspT107I GGYRCC 1 cut(s) 596
BspTI CTTAAG 1 cut(s) 950
BsrDI GCAATG 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 2 cut(s) 339, 879
BssECI CCNNGG 3 cut(s) 20, 134, 411
BssMI GATC 6 cut(s) 193, 472, 673, 1084, 1132, 1138
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 1094, 1173
Bst6I CTCTTC 2 cut(s) 766, 1109
BstAFI CTTAAG 1 cut(s) 950
BstAUI TGTACA 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 554, 645
BstDEI CTNAG 3 cut(s) 345, 381, 405
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 3 cut(s) 283, 1054, 1087
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 6 cut(s) 196, 475, 676, 1087, 1135, 1141
BstMAI GTCTC 2 cut(s) 341, 686
BstMBI GATC 6 cut(s) 193, 472, 673, 1084, 1132, 1138
BstMWI GCNNNNNNNGC 3 cut(s) 416, 782, 791
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 802
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 3 cut(s) 388, 430, 1189
BstV1I GCAGC 4 cut(s) 99, 537, 769, 772
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 472
BsuI GTATCC 2 cut(s) 809, 903
BsuRI GGCC 4 cut(s) 19, 60, 410, 719
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 3 cut(s) 283, 1054, 1087
BtsI GCAGTG 2 cut(s) 756, 1198
BtsIMutI CAGTG 4 cut(s) 346, 756, 1099, 1198
Cac8I GCNNGC 2 cut(s) 554, 645
CciI TCATGA 2 cut(s) 45, 399
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 3 cut(s) 749, 809, 988
CviQI GTAC 3 cut(s) 749, 809, 988
DdeI CTNAG 3 cut(s) 345, 381, 405
DpnI GATC 6 cut(s) 195, 474, 675, 1086, 1134, 1140
DpnII GATC 6 cut(s) 193, 472, 673, 1084, 1132, 1138
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 766, 1109
EarI CTCTTC 2 cut(s) 766, 1109
EciI GGCGGA 2 cut(s) 94, 145
Ecl136II GAGCTC 1 cut(s) 776
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 778
Eco47I GGWCC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 776
Eco57I CTGAAG 2 cut(s) 381, 479
EcoICRI GAGCTC 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 686
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 671
FauI CCCGC 1 cut(s) 108
FauNDI CATATG 1 cut(s) 670
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 5 cut(s) 110, 113, 526, 783, 786
FokI GGATG 3 cut(s) 290, 1061, 1094
FriOI GRGCYC 1 cut(s) 778
Fsp4HI GCNGC 5 cut(s) 110, 113, 526, 783, 786
FspBI CTAG 2 cut(s) 165, 183
FspI TGCGCA 1 cut(s) 13
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 110, 113, 526, 783, 786
GsuI CTGGAG 1 cut(s) 896
HaeIII GGCC 4 cut(s) 19, 60, 410, 719
HapII CCGG 3 cut(s) 61, 685, 965
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 3 cut(s) 514, 589, 1060
HindII GTYRAC 3 cut(s) 514, 589, 1060
HindIII AAGCTT 2 cut(s) 518, 1182
HinfI GANTC 3 cut(s) 499, 665, 946
HpaII CCGG 3 cut(s) 61, 685, 965
HphI GGTGA 3 cut(s) 1013, 1024, 1139
Hpy166II GTNNAC 3 cut(s) 514, 589, 1060
Hpy188I TCNGA 5 cut(s) 382, 477, 498, 568, 1169
Hpy188III TCNNGA 7 cut(s) 46, 242, 400, 424, 470, 1136, 1178
Hpy8I GTNNAC 3 cut(s) 514, 589, 1060
HpyAV CCTTC 5 cut(s) 80, 157, 361, 503, 962
HpyCH4III ACNGT 2 cut(s) 1094, 1173
HpyCH4IV ACGT 3 cut(s) 466, 679, 856
HpyCH4V TGCA 6 cut(s) 129, 556, 756, 893, 1040, 1191
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 782, 791
HpyF3I CTNAG 3 cut(s) 345, 381, 405
HpySE526I ACGT 3 cut(s) 466, 679, 856
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 6 cut(s) 193, 472, 673, 1084, 1132, 1138
LguI GCTCTTC 1 cut(s) 766
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 4 cut(s) 99, 537, 769, 772
LweI GCATC 1 cut(s) 820
MaeI CTAG 2 cut(s) 165, 183
MaeII ACGT 3 cut(s) 466, 679, 856
MaeIII GTNAC 2 cut(s) 739, 1030
MalI GATC 6 cut(s) 195, 474, 675, 1086, 1134, 1140
MboI GATC 6 cut(s) 193, 472, 673, 1084, 1132, 1138
MboII GAAGA 5 cut(s) 82, 550, 783, 839, 1126
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 778
MluCI AATT 9 cut(s) 40, 270, 321, 562, 620, 707, 839, 959, 1063
MlyI GAGTC 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 951, 1098, 1161
MslI CAYNNNNRTG 2 cut(s) 533, 642
MspA1I CMGCKG 1 cut(s) 112
MspCI CTTAAG 1 cut(s) 950
MspI CCGG 3 cut(s) 61, 685, 965
MspR9I CCNGG 1 cut(s) 136
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 3 cut(s) 416, 782, 791
NcoI CCATGG 1 cut(s) 411
NdeI CATATG 1 cut(s) 670
NdeII GATC 6 cut(s) 193, 472, 673, 1084, 1132, 1138
NlaIV GGNNCC 2 cut(s) 331, 598
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 739, 1030
NsbI TGCGCA 1 cut(s) 13
NspI RCATGY 1 cut(s) 802
OliI CACNNNNGTG 1 cut(s) 642
PagI TCATGA 2 cut(s) 45, 399
PciI ACATGT 1 cut(s) 798
PciSI GCTCTTC 1 cut(s) 766
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 665, 946
PkrI GCNGC 5 cut(s) 111, 114, 527, 784, 787
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PpuMI RGGWCCY 1 cut(s) 96
PscI ACATGT 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 778
Psp1406I AACGTT 1 cut(s) 856
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 331, 598
PspPI GGNCC 1 cut(s) 96
PspPPI RGGWCCY 1 cut(s) 96
PstI CTGCAG 1 cut(s) 1193
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 3 cut(s) 750, 810, 989
RsaNI GTAC 3 cut(s) 749, 809, 988
RseI CAYNNNNRTG 2 cut(s) 533, 642
SacI GAGCTC 1 cut(s) 778
SalI GTCGAC 1 cut(s) 587
SapI GCTCTTC 1 cut(s) 766
SaqAI TTAA 3 cut(s) 951, 1098, 1161
SatI GCNGC 5 cut(s) 110, 113, 526, 783, 786
Sau3AI GATC 6 cut(s) 193, 472, 673, 1084, 1132, 1138
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 1 cut(s) 820
SfcI CTRYAG 3 cut(s) 388, 430, 1189
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 2 cut(s) 533, 642
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
SpeI ACTAGT 2 cut(s) 164, 182
Sse9I AATT 9 cut(s) 40, 270, 321, 562, 620, 707, 839, 959, 1063
SsiI CCGC 5 cut(s) 79, 110, 115, 156, 833
SspI AATATT 1 cut(s) 578
SspMI CTAG 2 cut(s) 165, 183
SstI GAGCTC 1 cut(s) 778
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 1094, 1173
TaiI ACGT 3 cut(s) 469, 682, 859
TaqI TCGA 1 cut(s) 588
TasI AATT 9 cut(s) 40, 270, 321, 562, 620, 707, 839, 959, 1063
TatI WGTACW 2 cut(s) 748, 987
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 2 cut(s) 665, 946
Tru1I TTAA 3 cut(s) 951, 1098, 1161
Tru9I TTAA 3 cut(s) 951, 1098, 1161
TscAI CASTG 4 cut(s) 346, 763, 1099, 1198
TseFI GTSAC 2 cut(s) 739, 1030
TseI GCWGC 4 cut(s) 112, 525, 782, 785
Tsp45I GTSAC 2 cut(s) 739, 1030
TspDTI ATGAA 8 cut(s) 34, 227, 451, 464, 657, 849, 930, 993
TspRI CASTG 4 cut(s) 346, 763, 1099, 1198
Vha464I CTTAAG 1 cut(s) 950
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 3 cut(s) 40, 562, 620
XceI RCATGY 1 cut(s) 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 165, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.