Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009617

Physical Location & Seq

Genomic Coordinates Forward (+)

7191707 .. 7197978

Gene Structure 6272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06680.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAACTGTCTCCAGATTCTCACAGGATCCCCTGTTTTGCCTCTCCGGAGCTTCGGAAGCAGTCCCAGGAGGCCTTCCTTCTATATAGCAACTCTGGGAACAATGAGCTGCATCGATCTACCCGGAAGCATGGCCGTCAAGGCAATTTCTGGTTCCACCTCTAGTGCTGAGACAAGTGGTGCTGAAGCGAAAGAGGAAAAGTCTGAGATATATAGTAATAACATGACAGAAGCCATGGGTGCTGTCTTGACCTATAGGCATGAGCTAGGTATAAACTACAACTTCATACTTCCAGACTTGATTGTGGGGTCTTGCCTACAGACTCCTAAAGATGTTGACAAACTTCGAAGCATCGGCGTGAAGACTATATTTTGCTTGCAACAAGATTCAGATTTGGAATATTTTAGTGTTGACATTGGTGCCATTCAAGAGTATGTCAAAACATTTGATGACATTGAGCACTTGCGTGCTGAAATAAGGGACTTTGATTCATATGATCTACGTCTCCGGCTTCCTGTTGTCCTTAGCAAATTATATAACGCCATAAATCAAAATGGAGGTGTCACTTATGTGCATTGCACTGCTGGACTTGGAAGGGCTCCTGCAGCTGTGTTGGCTTACATGTTCTGGGTACTGGGATACAAACTTACAGATGCTGTCAATTTACTTATGAGAAAACGTCCGTGCTTCCCAAAACTGGATGCTATAAAAAATGCTACTGCAGATATTCTTACAGGCATGACAAAAAAGGTTGTCACGTTGACTTGGGGAGGTGATAATTGCTCTACAGTGGAAATCTCTGGACTTGATATTGGATGGGATCAGAGGATTCCTTTAGAGTTTAATGACAAACAGGGTTCATGGTTTCTCAAGAGGAAATTGCCGGAAGGACGATATGAATATAAATACATTATTGATGGTGGATGGACGCACAATAAGCACGAGCCTTTCACCTCTCCCAACAAGGATGGCCATGTCAACAATTATGTTCATGTTGTTGAGGAGGATCCTAACAGTGCTAGTGCGGCCATACGGAAGAGGATGACTGGTGATGATCCTCAACTTACAACAGAGGAACGACTGAAAATAAGACAGTTTCTCGAATCTTGTCCCAGTGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097367 GO:1901575 GO:2001066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

375

Amino Acids

41.76

Weight (kDa)

5.75

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52180 AT3G52180 AT3G52180 AT3G52180
fragaria_vesca	FvH4_7g06850 FvH4_7g06850
malus_domestica	MD15G1312700.v1.1
prunus_persica	Prupe.2G096100_v2.0.a1 Prupe.2G096100_v2.0.a1
pyrus_communis	pycom01g06680 pycom15g27630
rosa_chinensis	RchiOBHm_Chr1g0336591
rosa_laevigata	RLG00000029350
rosa_multiflora	Rmu_sc0002196.1_g000002 Rmu_sc0031975.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315480
rosa_rugosa	Rorug01G0126700
rosa_samantha	Rh1AG147900 Rh1BG115700 Rh1CG139300 Rh1DG154300
rosa_wichuraiana	Rw1G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	1 cut(s)	1025
AclWI	GGATC	6 cut(s)	21, 34, 828, 1001, 1014, 1049
AcoI	YGGCCR	3 cut(s)	132, 970, 1026
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	1 cut(s)	697
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	65
AleI	CACNNNNGTG	2 cut(s)	465, 569
AluBI	AGCT	4 cut(s)	51, 108, 265, 608
AluI	AGCT	4 cut(s)	51, 108, 265, 608
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	3 cut(s)	14, 164, 509
AlwI	GGATC	6 cut(s)	21, 34, 828, 1001, 1014, 1049
AlwNI	CAGNNNCTG	1 cut(s)	656
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	4 cut(s)	71, 132, 970, 1026
ApeKI	GCWGC	2 cut(s)	108, 605
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	785, 943, 1061
AsuII	TTCGAA	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	972
BamHI	GGATCC	2 cut(s)	26, 1006
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	941
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	95, 617
BccI	CCATC	4 cut(s)	810, 911, 918, 962
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	632
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	3 cut(s)	14, 164, 509
BfaI	CTAG	3 cut(s)	162, 266, 1020
BfmI	CTRYAG	5 cut(s)	253, 317, 603, 720, 786
BfuI	GTATCC	1 cut(s)	632
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	109, 606, 1026
BlsI	GCNGC	3 cut(s)	110, 607, 1027
Bme1390I	CCNGG	2 cut(s)	67, 123
BmiI	GGNNCC	5 cut(s)	28, 154, 421, 600, 1008
BmrFI	CCNGG	2 cut(s)	67, 123
BmrI	ACTGGG	2 cut(s)	644, 1107
BmsI	GCATC	4 cut(s)	120, 360, 643, 691
BmuI	ACTGGG	2 cut(s)	644, 1107
BpiI	GAAGAC	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	65, 234
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	4 cut(s)	639, 702, 1051, 1113
Bse3DI	GCAATG	1 cut(s)	574
BseAI	TCCGGA	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	67
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	65, 234
BseGI	GGATG	5 cut(s)	706, 821, 929, 973, 1047
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	159, 195
BseNI	ACTGG	4 cut(s)	639, 702, 1051, 1113
BseRI	GAGGAG	1 cut(s)	1016
BseXI	GCAGC	2 cut(s)	95, 617
BshFI	GGCC	4 cut(s)	73, 134, 972, 1028
BshNI	GGYRCC	1 cut(s)	419
BshVI	ATCGAT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	4 cut(s)	46, 123, 508, 884
BslFI	GGGAC	3 cut(s)	48, 494, 1095
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	3 cut(s)	14, 164, 509
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	3 cut(s)	48, 494, 1095
BsnI	GGCC	4 cut(s)	73, 134, 972, 1028
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	462, 601
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	26, 115, 496, 820, 1006, 1054
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	1 cut(s)	1025
BspANI	GGCC	4 cut(s)	73, 134, 972, 1028
BspCNI	CTCAG	2 cut(s)	160, 196
BspDI	ATCGAT	1 cut(s)	114
BspEI	TCCGGA	1 cut(s)	45
BspLI	GGNNCC	5 cut(s)	28, 154, 421, 600, 1008
BspMAI	CTGCAG	2 cut(s)	607, 724
BspPI	GGATC	6 cut(s)	21, 34, 828, 1001, 1014, 1049
BspT104I	TTCGAA	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	574
BsrI	ACTGG	4 cut(s)	639, 702, 1051, 1113
BssECI	CCNNGG	2 cut(s)	65, 234
BssMI	GATC	6 cut(s)	26, 115, 496, 820, 1006, 1054
BssSI	CACGAG	1 cut(s)	941
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	941
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	4 cut(s)	8, 790, 1016, 1095
Bst6I	CTCTTC	1 cut(s)	1031
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	377, 468
BstDEI	CTNAG	3 cut(s)	168, 204, 524
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	5 cut(s)	706, 821, 929, 973, 1047
BstKTI	GATC	6 cut(s)	29, 118, 499, 823, 1009, 1057
BstMAI	GTCTC	3 cut(s)	14, 164, 509
BstMBI	GATC	6 cut(s)	26, 115, 496, 820, 1006, 1054
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 140, 239, 605, 614, 937, 1025
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	2 cut(s)	65, 121
BstSFI	CTRYAG	5 cut(s)	253, 317, 603, 720, 786
BstV1I	GCAGC	2 cut(s)	95, 617
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	26, 1006
BstYI	RGATCY	2 cut(s)	26, 1006
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	4 cut(s)	73, 134, 972, 1028
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	5 cut(s)	706, 821, 929, 973, 1047
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	4 cut(s)	579, 795, 1021, 1120
Cac8I	GCNNGC	2 cut(s)	377, 468
CaiI	CAGNNNCTG	1 cut(s)	656
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	937
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	9 cut(s)	130, 223, 235, 260, 622, 739, 861, 974, 992
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	3 cut(s)	168, 204, 524
DpnI	GATC	6 cut(s)	28, 117, 498, 822, 1008, 1056
DpnII	GATC	6 cut(s)	26, 115, 496, 820, 1006, 1054
EaeI	YGGCCR	3 cut(s)	132, 970, 1026
Eam1104I	CTCTTC	1 cut(s)	1031
EarI	CTCTTC	1 cut(s)	1031
Eco130I	CCWWGG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	9 cut(s)	133, 226, 238, 263, 625, 742, 864, 977, 995
FaqI	GGGAC	3 cut(s)	48, 494, 1095
FatI	CATG	9 cut(s)	129, 222, 234, 259, 621, 738, 860, 973, 991
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	109, 606, 1026
FokI	GGATG	5 cut(s)	713, 828, 936, 980, 1054
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	3 cut(s)	109, 606, 1026
FspBI	CTAG	3 cut(s)	162, 266, 1020
GluI	GCNGC	3 cut(s)	109, 606, 1026
HaeIII	GGCC	4 cut(s)	73, 134, 972, 1028
HapII	CCGG	4 cut(s)	46, 123, 508, 884
HgaI	GACGC	1 cut(s)	937
Hin1II	CATG	9 cut(s)	133, 226, 238, 263, 625, 742, 864, 977, 995
HincII	GTYRAC	4 cut(s)	337, 412, 762, 979
HindII	GTYRAC	4 cut(s)	337, 412, 762, 979
HinfI	GANTC	6 cut(s)	16, 322, 386, 488, 829, 1103
HpaII	CCGG	4 cut(s)	46, 123, 508, 884
HphI	GGTGA	3 cut(s)	785, 943, 1061
Hpy166II	GTNNAC	4 cut(s)	337, 412, 762, 979
Hpy188I	TCNGA	4 cut(s)	56, 205, 391, 825
Hpy188III	TCNNGA	8 cut(s)	13, 46, 247, 293, 428, 801, 871, 1100
Hpy8I	GTNNAC	4 cut(s)	337, 412, 762, 979
HpyAV	CCTTC	4 cut(s)	84, 88, 588, 881
HpyCH4III	ACNGT	4 cut(s)	8, 790, 1016, 1095
HpyCH4IV	ACGT	3 cut(s)	502, 679, 758
HpyCH4V	TGCA	6 cut(s)	111, 379, 574, 579, 605, 722
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 140, 239, 605, 614, 937, 1025
HpyF3I	CTNAG	3 cut(s)	168, 204, 524
HpySE526I	ACGT	3 cut(s)	502, 679, 758
Hsp92II	CATG	9 cut(s)	133, 226, 238, 263, 625, 742, 864, 977, 995
Kpn2I	TCCGGA	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	26, 115, 496, 820, 1006, 1054
LmnI	GCTCC	2 cut(s)	48, 604
Lsp1109I	GCAGC	2 cut(s)	95, 617
LweI	GCATC	4 cut(s)	120, 360, 643, 691
MaeI	CTAG	3 cut(s)	162, 266, 1020
MaeII	ACGT	3 cut(s)	502, 679, 758
MaeIII	GTNAC	2 cut(s)	562, 754
MalI	GATC	6 cut(s)	28, 117, 498, 822, 1008, 1056
MboI	GATC	6 cut(s)	26, 115, 496, 820, 1006, 1054
MboII	GAAGA	2 cut(s)	373, 1048
MflI	RGATCY	2 cut(s)	26, 1006
MhlI	GDGCHC	2 cut(s)	462, 601
MlsI	TGGCCA	1 cut(s)	972
MluCI	AATT	6 cut(s)	144, 530, 661, 778, 878, 982
MluNI	TGGCCA	1 cut(s)	972
MlyI	GAGTC	1 cut(s)	316
Mox20I	TGGCCA	1 cut(s)	972
MroI	TCCGGA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	972
MseI	TTAA	1 cut(s)	843
MslI	CAYNNNNRTG	3 cut(s)	356, 465, 569
Msp20I	TGGCCA	1 cut(s)	972
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	4 cut(s)	46, 123, 508, 884
MspR9I	CCNGG	2 cut(s)	67, 123
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	7 cut(s)	57, 140, 239, 605, 614, 937, 1025
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	6 cut(s)	26, 115, 496, 820, 1006, 1054
NlaIII	CATG	9 cut(s)	133, 226, 238, 263, 625, 742, 864, 977, 995
NlaIV	GGNNCC	5 cut(s)	28, 154, 421, 600, 1008
NmuCI	GTSAC	2 cut(s)	562, 754
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	346
OliI	CACNNNNGTG	2 cut(s)	465, 569
PceI	AGGCCT	1 cut(s)	73
PciI	ACATGT	1 cut(s)	621
PfeI	GAWTC	5 cut(s)	16, 386, 488, 829, 1103
PkrI	GCNGC	3 cut(s)	110, 607, 1027
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PscI	ACATGT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	5 cut(s)	28, 154, 421, 600, 1008
PstI	CTGCAG	2 cut(s)	607, 724
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	2 cut(s)	26, 1006
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	3 cut(s)	356, 465, 569
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	3 cut(s)	109, 606, 1026
Sau3AI	GATC	6 cut(s)	26, 115, 496, 820, 1006, 1054
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	67, 123
SduI	GDGCHC	2 cut(s)	462, 601
SfaNI	GCATC	4 cut(s)	120, 360, 643, 691
SfcI	CTRYAG	5 cut(s)	253, 317, 603, 720, 786
SfuI	TTCGAA	1 cut(s)	346
SmiMI	CAYNNNNRTG	3 cut(s)	356, 465, 569
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse9I	AATT	6 cut(s)	144, 530, 661, 778, 878, 982
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	1025
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	3 cut(s)	162, 266, 1020
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	65, 121
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	4 cut(s)	8, 790, 1016, 1095
TaiI	ACGT	3 cut(s)	505, 682, 761
TaqI	TCGA	3 cut(s)	114, 346, 1101
TasI	AATT	6 cut(s)	144, 530, 661, 778, 878, 982
TauI	GCSGC	1 cut(s)	1028
TfiI	GAWTC	5 cut(s)	16, 386, 488, 829, 1103
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TscAI	CASTG	4 cut(s)	586, 795, 1021, 1120
TseFI	GTSAC	2 cut(s)	562, 754
TseI	GCWGC	2 cut(s)	108, 605
Tsp45I	GTSAC	2 cut(s)	562, 754
TspDTI	ATGAA	6 cut(s)	17, 274, 480, 849, 912, 980
TspGWI	ACGGA	2 cut(s)	672, 1048
TspRI	CASTG	4 cut(s)	586, 795, 1021, 1120
XceI	RCATGY	1 cut(s)	625
XspI	CTAG	3 cut(s)	162, 266, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.