Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009617

Physical Location & Seq

Genomic Coordinates Forward (+)

19758148 .. 19765250

Gene Structure 7103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG115700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAACTGTCTCCAGAATCTTCCAGGGTCCTCTGTTTTGCCGCTGCAGGGTTTCGTATGCAATCCCAGGAAGCCGTCCTTCTCCTCCTCCTCCGCCACTACTAGTCTGGGAATGATGAGTAGTAATACCGATCTACCCAGAAGCATGGCTGTCAAGGCAGTTTCTGGTTCCACTCCCAGTGCTGAGACAAGTGGTGCTGAAGTGAAGGAGGAAAAATCTGAGGTATATAGTAATGTCATGACAGAGGCCATGGGTGCTGTCCTGACCTATAGGCATGAGCTGGGTATGAACTACAACTTCATACGTCCAGATCTGATTGTGGGGTCTTGCCTTCAGACTCCAAAAGATGTTGACAAGCTTCGCAGCATCGGAGTGAAGACTATTTTCTGCGTGCAACAAAATTCAGATTTGGAATATTTTGGGGTCGATATTGGTGCCATCATAGAGTATGCCAAAGAATTTGATGACATTGAACACTTGCGTGCTGAAATAAGGGACTTTGATTCATATGATCTACGTCTCCAGCTTCCTGCTGTTGTTAGTAAATTATATAAGGCCATAAACCGAAATGGAGGTGTCACTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTACTGCGTTAGCTTACATGTTCTGGGTACAAGGATACAAACTTGAAGATGCGGTCAAATTACTTCTGAGCAAACGTTCATGCTGCCCAAAACTGGAGGCTATAAAAACCGCAACTGCTGATATTCTCACAGGCATGACAAAAAAGCCAGTCACGTTGACATGGGGCGGTAATAATTGCTCTACTGTGGAAATCTCTGGACTTGATATTGGATGGGGTCAGAGGATACCTTTAGAGTTTGATGACAAACAGGGTTCATGGATTCTTAAGAGGGAATTGCCGGAAGGACGATATGAATATAAGTACATTATTGATGGTGAATGGACACACAATAAAAATGAGCTTGTCGCCTCTGCAAACAATGATGGTCATGTCAACAATTATGTTCAGGTTGAGGATGATCCTAACAGTGTTAATGCCATCATAAGGAAGAGATTGATGGGTGATGATCCTGATCTAACAACACACGAAAGACTTAAAATCAGACAGTTTCTTGAAGCTTATCGCAGTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097367 GO:1901575 GO:2001066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

378

Amino Acids

42.06

Weight (kDa)

5.56

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	147 - 234	1e-10	Dual specificity phosphatase, catalytic domain
AMPK1_CBM	PF16561	256 - 340	3.7e-19	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52180 AT3G52180 AT3G52180 AT3G52180
fragaria_vesca	FvH4_7g06850 FvH4_7g06850
malus_domestica	MD15G1312700.v1.1
prunus_persica	Prupe.2G096100_v2.0.a1 Prupe.2G096100_v2.0.a1
pyrus_communis	pycom01g06680 pycom15g27630
rosa_chinensis	RchiOBHm_Chr1g0336591
rosa_laevigata	RLG00000029350
rosa_multiflora	Rmu_sc0002196.1_g000002 Rmu_sc0031975.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315480
rosa_rugosa	Rorug01G0126700
rosa_samantha	Rh1AG147900 Rh1BG115700 Rh1CG139300 Rh1DG154300
rosa_wichuraiana	Rw1G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AciI	CCGC	5 cut(s)	41, 93, 671, 729, 786
AclI	AACGTT	1 cut(s)	694
AclWI	GGATC	2 cut(s)	1013, 1061
AcsI	RAATTY	2 cut(s)	400, 458
AcuI	CTGAAG	2 cut(s)	219, 317
AfaI	GTAC	2 cut(s)	648, 923
AfiI	CCNNNNNNNGG	3 cut(s)	47, 712, 1044
AflII	CTTAAG	1 cut(s)	884
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	473, 665, 1115
AhlI	ACTAGT	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	22, 65
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	7 cut(s)	280, 358, 526, 614, 632, 961, 1118
AluI	AGCT	7 cut(s)	280, 358, 526, 614, 632, 961, 1118
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	3 cut(s)	14, 179, 524
AlwI	GGATC	2 cut(s)	1013, 1061
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	246, 555
ApeKI	GCWGC	3 cut(s)	43, 363, 702
ApoI	RAATTY	2 cut(s)	400, 458
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	947, 1073
AvaII	GGWCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	30, 375, 689
BccI	CCATC	6 cut(s)	446, 825, 926, 977, 1046, 1051
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	2 cut(s)	24, 67
BciVI	GTATCC	2 cut(s)	647, 837
BcoDI	GTCTC	3 cut(s)	14, 179, 524
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	44, 268
BfrI	CTTAAG	1 cut(s)	884
BfuI	GTATCC	2 cut(s)	647, 837
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	4 cut(s)	41, 44, 364, 703
BlsI	GCNGC	4 cut(s)	42, 45, 365, 704
Bme1390I	CCNGG	2 cut(s)	24, 67
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	28, 169, 436
BmrFI	CCNGG	2 cut(s)	24, 67
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	2 cut(s)	375, 658
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	2 cut(s)	506, 734
BsaBI	GATNNNNATC	1 cut(s)	1071
BsaJI	CCNNGG	3 cut(s)	23, 65, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 712, 1044
Bse1I	ACTGG	3 cut(s)	177, 717, 767
Bse3DI	GCAATG	1 cut(s)	589
Bse8I	GATNNNNATC	1 cut(s)	1071
BseBI	CCWGG	2 cut(s)	24, 67
BseDI	CCNNGG	3 cut(s)	23, 65, 249
BseGI	GGATG	2 cut(s)	836, 1021
BseJI	GATNNNNATC	1 cut(s)	1071
BseLI	CCNNNNNNNGG	3 cut(s)	47, 712, 1044
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	3 cut(s)	174, 210, 677
BseNI	ACTGG	3 cut(s)	177, 717, 767
BseRI	GAGGAG	3 cut(s)	73, 76, 79
BseXI	GCAGC	3 cut(s)	30, 375, 689
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	248, 557
BshNI	GGYRCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	899
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	3 cut(s)	47, 712, 1044
BsmAI	GTCTC	3 cut(s)	14, 179, 524
BsmBI	CGTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	248, 557
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	6 cut(s)	130, 310, 511, 1018, 1066, 1072
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	5 cut(s)	41, 93, 671, 729, 786
BspANI	GGCC	2 cut(s)	248, 557
BspCNI	CTCAG	3 cut(s)	175, 211, 678
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	28, 169, 436
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	2 cut(s)	1013, 1061
BspQI	GCTCTTC	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	434
BspTI	CTTAAG	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	3 cut(s)	177, 717, 767
BssECI	CCNNGG	3 cut(s)	23, 65, 249
BssMI	GATC	6 cut(s)	130, 310, 511, 1018, 1066, 1072
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	24, 67
Bst4CI	ACNGT	4 cut(s)	8, 805, 1028, 1107
Bst6I	CTCTTC	2 cut(s)	604, 1043
BstAFI	CTTAAG	1 cut(s)	884
BstC8I	GCNNGC	2 cut(s)	392, 483
BstDEI	CTNAG	3 cut(s)	183, 219, 686
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	836, 1021
BstKTI	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
BstMAI	GTCTC	3 cut(s)	14, 179, 524
BstMBI	GATC	6 cut(s)	130, 310, 511, 1018, 1066, 1072
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 254
BstNI	CCWGG	2 cut(s)	24, 67
BstNSI	RCATGY	1 cut(s)	640
BstSCI	CCNGG	2 cut(s)	22, 65
BstSFI	CTRYAG	2 cut(s)	44, 268
BstV1I	GCAGC	3 cut(s)	30, 375, 689
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	2 cut(s)	647, 837
BsuRI	GGCC	2 cut(s)	248, 557
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	836, 1021
BtsI	GCAGTG	2 cut(s)	594, 1132
BtsIMutI	CAGTG	4 cut(s)	184, 594, 1033, 1132
Cac8I	GCNNGC	2 cut(s)	392, 483
CaiI	CAGNNNCTG	1 cut(s)	164
CciI	TCATGA	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	647, 922
CviQI	GTAC	2 cut(s)	647, 922
DdeI	CTNAG	3 cut(s)	183, 219, 686
DpnI	GATC	6 cut(s)	132, 312, 513, 1020, 1068, 1074
DpnII	GATC	6 cut(s)	130, 310, 511, 1018, 1066, 1072
Eam1104I	CTCTTC	2 cut(s)	604, 1043
EarI	CTCTTC	2 cut(s)	604, 1043
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	614
Eco57I	CTGAAG	2 cut(s)	219, 317
EcoICRI	GAGCTC	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	22, 65
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	524
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	509
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	4 cut(s)	41, 44, 364, 703
FokI	GGATG	2 cut(s)	843, 1028
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	4 cut(s)	41, 44, 364, 703
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	4 cut(s)	41, 44, 364, 703
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	2 cut(s)	506, 734
HaeIII	GGCC	2 cut(s)	248, 557
HapII	CCGG	1 cut(s)	899
HincII	GTYRAC	3 cut(s)	352, 777, 994
HindII	GTYRAC	3 cut(s)	352, 777, 994
HindIII	AAGCTT	2 cut(s)	356, 1116
HinfI	GANTC	4 cut(s)	16, 337, 503, 880
HpaII	CCGG	1 cut(s)	899
HphI	GGTGA	2 cut(s)	947, 1073
Hpy166II	GTNNAC	3 cut(s)	352, 777, 994
Hpy188I	TCNGA	8 cut(s)	220, 315, 336, 371, 406, 687, 840, 1103
Hpy188III	TCNNGA	7 cut(s)	13, 238, 262, 308, 816, 1070, 1112
Hpy8I	GTNNAC	3 cut(s)	352, 777, 994
HpyAV	CCTTC	4 cut(s)	88, 199, 341, 896
HpyCH4III	ACNGT	4 cut(s)	8, 805, 1028, 1107
HpyCH4IV	ACGT	4 cut(s)	304, 517, 694, 773
HpyCH4V	TGCA	5 cut(s)	46, 60, 394, 594, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 254
HpyF3I	CTNAG	3 cut(s)	183, 219, 686
HpySE526I	ACGT	4 cut(s)	304, 517, 694, 773
Kzo9I	GATC	6 cut(s)	130, 310, 511, 1018, 1066, 1072
LguI	GCTCTTC	1 cut(s)	604
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	3 cut(s)	30, 375, 689
LweI	GCATC	2 cut(s)	375, 658
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	4 cut(s)	304, 517, 694, 773
MaeIII	GTNAC	2 cut(s)	577, 769
MalI	GATC	6 cut(s)	132, 312, 513, 1020, 1068, 1074
MboI	GATC	6 cut(s)	130, 310, 511, 1018, 1066, 1072
MboII	GAAGA	5 cut(s)	11, 388, 621, 677, 1060
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	7 cut(s)	400, 458, 545, 677, 793, 893, 997
MlyI	GAGTC	1 cut(s)	331
MseI	TTAA	3 cut(s)	885, 1032, 1095
MslI	CAYNNNNRTG	3 cut(s)	371, 480, 752
MspA1I	CMGCKG	1 cut(s)	43
MspCI	CTTAAG	1 cut(s)	884
MspI	CCGG	1 cut(s)	899
MspR9I	CCNGG	2 cut(s)	24, 67
MvaI	CCWGG	2 cut(s)	24, 67
MwoI	GCNNNNNNNGC	2 cut(s)	155, 254
NcoI	CCATGG	1 cut(s)	249
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	6 cut(s)	130, 310, 511, 1018, 1066, 1072
NlaIV	GGNNCC	3 cut(s)	28, 169, 436
NmuCI	GTSAC	2 cut(s)	577, 769
NspI	RCATGY	1 cut(s)	640
OliI	CACNNNNGTG	1 cut(s)	480
PagI	TCATGA	1 cut(s)	237
PciI	ACATGT	1 cut(s)	636
PciSI	GCTCTTC	1 cut(s)	604
PfeI	GAWTC	3 cut(s)	16, 503, 880
PkrI	GCNGC	4 cut(s)	42, 45, 365, 704
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	616
Psp1406I	AACGTT	1 cut(s)	694
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	22, 65
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	2 cut(s)	22, 65
PspN4I	GGNNCC	3 cut(s)	28, 169, 436
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	648, 923
RsaNI	GTAC	2 cut(s)	647, 922
RseI	CAYNNNNRTG	3 cut(s)	371, 480, 752
SacI	GAGCTC	1 cut(s)	616
SapI	GCTCTTC	1 cut(s)	604
SaqAI	TTAA	3 cut(s)	885, 1032, 1095
SatI	GCNGC	4 cut(s)	41, 44, 364, 703
Sau3AI	GATC	6 cut(s)	130, 310, 511, 1018, 1066, 1072
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	24, 67
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	2 cut(s)	375, 658
SfcI	CTRYAG	2 cut(s)	44, 268
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	3 cut(s)	371, 480, 752
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
SpeI	ACTAGT	1 cut(s)	101
Sse9I	AATT	7 cut(s)	400, 458, 545, 677, 793, 893, 997
SsiI	CCGC	5 cut(s)	41, 93, 671, 729, 786
SspI	AATATT	1 cut(s)	416
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	616
StyD4I	CCNGG	2 cut(s)	22, 65
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	4 cut(s)	8, 805, 1028, 1107
TaiI	ACGT	4 cut(s)	307, 520, 697, 776
TaqI	TCGA	1 cut(s)	426
TasI	AATT	7 cut(s)	400, 458, 545, 677, 793, 893, 997
TatI	WGTACW	1 cut(s)	921
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	16, 503, 880
Tru1I	TTAA	3 cut(s)	885, 1032, 1095
Tru9I	TTAA	3 cut(s)	885, 1032, 1095
TscAI	CASTG	4 cut(s)	184, 601, 1033, 1132
TseFI	GTSAC	2 cut(s)	577, 769
TseI	GCWGC	3 cut(s)	43, 363, 702
Tsp45I	GTSAC	2 cut(s)	577, 769
TspDTI	ATGAA	7 cut(s)	17, 289, 302, 495, 687, 864, 927
TspRI	CASTG	4 cut(s)	184, 601, 1033, 1132
Vha464I	CTTAAG	1 cut(s)	884
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	2 cut(s)	400, 458
XceI	RCATGY	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.