Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009617

Physical Location & Seq

Genomic Coordinates Forward (+)

30394844 .. 30402395

Gene Structure 7552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAACTGTCTCCAGAATCTTCCCGGGTCCTCTGTTTTGCCGCTGCGGGGTTTCGTATGCAATCCCAGGAAGCCGTCCTCCTCCTCCTCCTCCTCCGCCACTACTAGTCTGGGAATGATGACTGGTAATACCGATCTACCCAGAAGCATGGCTGTCAAGGCAGTTTCTGGTTCCACTCCCAGTGCTGAGACAAGTGGTGCTGAAGTGAAGGAGGAAAAATCTGAGGTATATAGTAATGTCATGACAGAGGCCATGGGTGCTGTCCTGACCTATAGGCATGAGCTGGGTATGAACTACAACTTCATACGTCCAGATCTGATTGTGGGGTCTTGCCTTCAGACTCCAAAAGATGTTGACAAGCTTCGCAGCATTGGAGTGAAGACTATTTTCTGCTTGCAACAAAATTCAGATTTGGAATATTTTGGGGTCGACATTGGTGCCATTATAGAGTATGCCAAAGAATTTGATGACATTGAACACTTGCGTGCTGAAATAAGGGACTTTGATTCATATGATCTACGTCTCCGGCTTCCTGCTGTTGTTAGTAAATTATATAAGGCCATAAACAGAAATGGAGGTGTCACTTATGTACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTACTGCGTTGGCTTACATGTTCTGGGTACAAGGATACAAACTTGAAGATGCGGTCAAATTACTTCTGAGCAAACGTTCATGCTTCCCAAAACTGGAGGCGATAAAAACCGCAACTGCTGATATTCTCACAGGCATGACAAAAAAGCCAGTCACGTTGACATGGGGCGGTAATAATTGCTCTACTGTGGAAATCTCTGGACTTGATATCGGATGGGGTCAGAGGATACCTTTAGAGTTTGATGACAAACAGGGTTCATGGATTCTTAAGAGGGAATTGCCGGAAGGACGATATGAATATAAGTACATTATTGATGGTGAATGGACACACAATAAAAATGAGCTTGTCGCCTCTGCAAACAAGGATGGTCATGTCAACAATTATGTTCAGATTGAGGATGATCCTAACAGTGTTAATGCCATCATAAGGAAGAGATTGATGGGTGATGATCCTGATCTAACAACGCACGAAAGACTTAAAATCAGACAGTTTCTTGAAGCTTATTGCAGTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097367 GO:1901575 GO:2001066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

379

Amino Acids

42.15

Weight (kDa)

5.82

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	104 - 225	5.5e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	148 - 236	6.1e-11	Dual specificity phosphatase, catalytic domain
AMPK1_CBM	PF16561	257 - 341	6.6e-19	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52180 AT3G52180 AT3G52180 AT3G52180
fragaria_vesca	FvH4_7g06850 FvH4_7g06850
malus_domestica	MD15G1312700.v1.1
prunus_persica	Prupe.2G096100_v2.0.a1 Prupe.2G096100_v2.0.a1
pyrus_communis	pycom01g06680 pycom15g27630
rosa_chinensis	RchiOBHm_Chr1g0336591
rosa_laevigata	RLG00000029350
rosa_multiflora	Rmu_sc0002196.1_g000002 Rmu_sc0031975.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315480
rosa_rugosa	Rorug01G0126700
rosa_samantha	Rh1AG147900 Rh1BG115700 Rh1CG139300 Rh1DG154300
rosa_wichuraiana	Rw1G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	6 cut(s)	41, 46, 96, 674, 732, 789
AclI	AACGTT	1 cut(s)	697
AclWI	GGATC	2 cut(s)	1016, 1064
AcsI	RAATTY	2 cut(s)	403, 461
AcuI	CTGAAG	2 cut(s)	222, 320
AfaI	GTAC	3 cut(s)	591, 651, 926
AfiI	CCNNNNNNNGG	3 cut(s)	47, 715, 1047
AflII	CTTAAG	1 cut(s)	887
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	476, 668, 1118
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	483
AluBI	AGCT	5 cut(s)	283, 361, 617, 964, 1121
AluI	AGCT	5 cut(s)	283, 361, 617, 964, 1121
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	3 cut(s)	14, 182, 527
AlwI	GGATC	2 cut(s)	1016, 1064
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	249, 558
ApeKI	GCWGC	2 cut(s)	43, 366
ApoI	RAATTY	2 cut(s)	403, 461
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	2 cut(s)	24, 25
AsuHPI	GGTGA	2 cut(s)	950, 1076
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	2 cut(s)	30, 378
BccI	CCATC	5 cut(s)	828, 929, 980, 1049, 1054
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	67
BciVI	GTATCC	2 cut(s)	650, 840
BcnI	CCSGG	2 cut(s)	24, 25
BcoDI	GTCTC	3 cut(s)	14, 182, 527
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	271
BfrI	CTTAAG	1 cut(s)	887
BfuI	GTATCC	2 cut(s)	650, 840
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	3 cut(s)	41, 44, 367
BlsI	GCNGC	3 cut(s)	42, 45, 368
Bme1390I	CCNGG	3 cut(s)	24, 25, 67
Bme18I	GGWCC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	28, 172, 439
BmrFI	CCNGG	3 cut(s)	24, 25, 67
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	661
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	737
BpuMI	CCSGG	2 cut(s)	24, 25
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaJI	CCNNGG	3 cut(s)	23, 65, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 715, 1047
Bse1I	ACTGG	4 cut(s)	127, 180, 720, 770
Bse3DI	GCAATG	1 cut(s)	592
Bse8I	GATNNNNATC	1 cut(s)	1074
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	23, 65, 252
BseGI	GGATG	3 cut(s)	839, 991, 1024
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	3 cut(s)	47, 715, 1047
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	3 cut(s)	177, 213, 680
BseNI	ACTGG	4 cut(s)	127, 180, 720, 770
BseRI	GAGGAG	5 cut(s)	70, 73, 76, 79, 82
BseXI	GCAGC	2 cut(s)	30, 378
BseYI	CCCAGC	1 cut(s)	283
BshFI	GGCC	2 cut(s)	251, 560
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	24, 526, 902
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	3 cut(s)	47, 715, 1047
BsmAI	GTCTC	3 cut(s)	14, 182, 527
BsmBI	CGTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	251, 560
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp1407I	TGTACA	1 cut(s)	589
Bsp143I	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	6 cut(s)	41, 46, 96, 674, 732, 789
BspANI	GGCC	2 cut(s)	251, 560
BspCNI	CTCAG	3 cut(s)	178, 214, 681
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	28, 172, 439
BspPI	GGATC	2 cut(s)	1016, 1064
BspQI	GCTCTTC	1 cut(s)	607
BspT107I	GGYRCC	1 cut(s)	437
BspTI	CTTAAG	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	592
BsrGI	TGTACA	1 cut(s)	589
BsrI	ACTGG	4 cut(s)	127, 180, 720, 770
BssECI	CCNNGG	3 cut(s)	23, 65, 252
BssMI	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	4 cut(s)	8, 808, 1031, 1110
Bst6I	CTCTTC	2 cut(s)	607, 1046
BstAFI	CTTAAG	1 cut(s)	887
BstAUI	TGTACA	1 cut(s)	589
BstC8I	GCNNGC	2 cut(s)	395, 486
BstDEI	CTNAG	3 cut(s)	186, 222, 689
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	839, 991, 1024
BstKTI	GATC	6 cut(s)	136, 316, 517, 1024, 1072, 1078
BstMAI	GTCTC	3 cut(s)	14, 182, 527
BstMBI	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 257
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	3 cut(s)	22, 23, 65
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	30, 378
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	2 cut(s)	650, 840
BsuRI	GGCC	2 cut(s)	251, 560
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	3 cut(s)	839, 991, 1024
BtsI	GCAGTG	2 cut(s)	597, 1135
BtsIMutI	CAGTG	4 cut(s)	187, 597, 1036, 1135
Cac8I	GCNNGC	2 cut(s)	395, 486
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	27
Cfr9I	CCCGGG	1 cut(s)	23
Csp6I	GTAC	3 cut(s)	590, 650, 925
CviQI	GTAC	3 cut(s)	590, 650, 925
DdeI	CTNAG	3 cut(s)	186, 222, 689
DpnI	GATC	6 cut(s)	135, 315, 516, 1023, 1071, 1077
DpnII	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
Eam1104I	CTCTTC	2 cut(s)	607, 1046
EarI	CTCTTC	2 cut(s)	607, 1046
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	619
Eco32I	GATATC	1 cut(s)	829
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	617
Eco57I	CTGAAG	2 cut(s)	222, 320
Eco88I	CYCGRG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	829
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	527
FaqI	GGGAC	1 cut(s)	512
FauI	CCCGC	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	41, 44, 367
FokI	GGATG	3 cut(s)	846, 998, 1031
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	3 cut(s)	41, 44, 367
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	3 cut(s)	41, 44, 367
GsaI	CCCAGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	2 cut(s)	251, 560
HapII	CCGG	3 cut(s)	24, 526, 902
HincII	GTYRAC	4 cut(s)	355, 430, 780, 997
HindII	GTYRAC	4 cut(s)	355, 430, 780, 997
HindIII	AAGCTT	2 cut(s)	359, 1119
HinfI	GANTC	4 cut(s)	16, 340, 506, 883
HpaII	CCGG	3 cut(s)	24, 526, 902
HphI	GGTGA	2 cut(s)	950, 1076
Hpy166II	GTNNAC	4 cut(s)	355, 430, 780, 997
Hpy188I	TCNGA	9 cut(s)	223, 318, 339, 409, 690, 833, 843, 1011, 1106
Hpy188III	TCNNGA	7 cut(s)	13, 241, 265, 311, 819, 1073, 1115
Hpy8I	GTNNAC	4 cut(s)	355, 430, 780, 997
HpyAV	CCTTC	3 cut(s)	202, 344, 899
HpyCH4III	ACNGT	4 cut(s)	8, 808, 1031, 1110
HpyCH4IV	ACGT	4 cut(s)	307, 520, 697, 776
HpyCH4V	TGCA	5 cut(s)	60, 397, 597, 977, 1128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 257
HpyF3I	CTNAG	3 cut(s)	186, 222, 689
HpySE526I	ACGT	4 cut(s)	307, 520, 697, 776
Kzo9I	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
LguI	GCTCTTC	1 cut(s)	607
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	30, 378
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	4 cut(s)	307, 520, 697, 776
MaeIII	GTNAC	2 cut(s)	580, 772
MalI	GATC	6 cut(s)	135, 315, 516, 1023, 1071, 1077
MboI	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
MboII	GAAGA	5 cut(s)	11, 391, 624, 680, 1063
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	7 cut(s)	403, 461, 548, 680, 796, 896, 1000
MlyI	GAGTC	1 cut(s)	334
MseI	TTAA	3 cut(s)	888, 1035, 1098
MslI	CAYNNNNRTG	3 cut(s)	374, 483, 755
MspA1I	CMGCKG	1 cut(s)	43
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	3 cut(s)	24, 526, 902
MspR9I	CCNGG	3 cut(s)	24, 25, 67
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	158, 257
NciI	CCSGG	2 cut(s)	24, 25
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
NlaIV	GGNNCC	3 cut(s)	28, 172, 439
NmuCI	GTSAC	2 cut(s)	580, 772
NspI	RCATGY	1 cut(s)	643
OliI	CACNNNNGTG	1 cut(s)	483
PagI	TCATGA	1 cut(s)	240
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	607
PfeI	GAWTC	3 cut(s)	16, 506, 883
PkrI	GCNGC	3 cut(s)	42, 45, 368
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	619
Psp1406I	AACGTT	1 cut(s)	697
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	3 cut(s)	28, 172, 439
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	3 cut(s)	591, 651, 926
RsaNI	GTAC	3 cut(s)	590, 650, 925
RseI	CAYNNNNRTG	3 cut(s)	374, 483, 755
SacI	GAGCTC	1 cut(s)	619
SalI	GTCGAC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	607
SaqAI	TTAA	3 cut(s)	888, 1035, 1098
SatI	GCNGC	3 cut(s)	41, 44, 367
Sau3AI	GATC	6 cut(s)	133, 313, 514, 1021, 1069, 1075
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	3 cut(s)	24, 25, 67
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	27
SmaI	CCCGGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	374, 483, 755
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	7 cut(s)	403, 461, 548, 680, 796, 896, 1000
SsiI	CCGC	6 cut(s)	41, 46, 96, 674, 732, 789
SspI	AATATT	1 cut(s)	419
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	619
StyD4I	CCNGG	3 cut(s)	22, 23, 65
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	4 cut(s)	8, 808, 1031, 1110
TaiI	ACGT	4 cut(s)	310, 523, 700, 779
TaqI	TCGA	1 cut(s)	429
TasI	AATT	7 cut(s)	403, 461, 548, 680, 796, 896, 1000
TatI	WGTACW	2 cut(s)	589, 924
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	16, 506, 883
Tru1I	TTAA	3 cut(s)	888, 1035, 1098
Tru9I	TTAA	3 cut(s)	888, 1035, 1098
TscAI	CASTG	4 cut(s)	187, 604, 1036, 1135
TseFI	GTSAC	2 cut(s)	580, 772
TseI	GCWGC	2 cut(s)	43, 366
Tsp45I	GTSAC	2 cut(s)	580, 772
TspDTI	ATGAA	7 cut(s)	17, 292, 305, 498, 690, 867, 930
TspMI	CCCGGG	1 cut(s)	23
TspRI	CASTG	4 cut(s)	187, 604, 1036, 1135
Vha464I	CTTAAG	1 cut(s)	887
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	2 cut(s)	403, 461
XceI	RCATGY	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmaI	CCCGGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.