Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009617

Physical Location & Seq

Genomic Coordinates Forward (+)

21633187 .. 21634953

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0126700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGTCCTCTTCAGCCACATTTTCCAGTCTCCACCACCACCAGCCTCCTCCTCCTCCGCTTCTCTACCTTCATCCAAACCAAGGCCATTCTTCTGCTCCGCATCAGCATCATCCTCCATGGAGCCGCGCCCAACAAAGTTCATGGAGTTCCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTATCCACCGTCGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACCCTCCCACCAGACGTACAATACTACCAGAACGACACCGCCACTAACCACGCGTCTCTTCACATCAGATCCGGCCTCCCTTCCTCCCCTATTGATTTCATACTAGGAAGTTGGTTGCACTGTCAGCTACCAACAGGTGGAGCATTGAACATTACAAGTTTTTCATCATATCTCAACCCATCAACAGATGCACCTAATTTCCTACTCGAGTTGATCCAAAGCAGTCCGACTTCACTAGTCCTCATCCTCGACTTGCCTCCTCGAAAAGACCTTGTTCTCCACCCAGACTACCTCAAAACATTTTATGAGGATACAAAGCTGGACACCCCAAGGCAAAAGCTCGAGAAACTAGCTGAGGTGAAACCTTACTTCTCCTCATCGCTTTACATCCGCAGCGTTGTGTCTCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCGGTTGCAAAGGAAGTGTTGGGCATCTGGTTGGAACAATGCGCTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATTGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTTGGACCTGATGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097367 GO:1901575 GO:2001066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

312

Amino Acids

34.49

Weight (kDa)

6.32

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	57 - 308	1.2e-120	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52180 AT3G52180 AT3G52180 AT3G52180
fragaria_vesca	FvH4_7g06850 FvH4_7g06850
malus_domestica	MD15G1312700.v1.1
prunus_persica	Prupe.2G096100_v2.0.a1 Prupe.2G096100_v2.0.a1
pyrus_communis	pycom01g06680 pycom15g27630
rosa_chinensis	RchiOBHm_Chr1g0336591
rosa_laevigata	RLG00000029350
rosa_multiflora	Rmu_sc0002196.1_g000002 Rmu_sc0031975.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315480
rosa_rugosa	Rorug01G0126700
rosa_samantha	Rh1AG147900 Rh1BG115700 Rh1CG139300 Rh1DG154300
rosa_wichuraiana	Rw1G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	3 cut(s)	130, 214, 293
AciI	CCGC	6 cut(s)	60, 102, 128, 279, 631, 651
AclWI	GGATC	2 cut(s)	303, 448
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	84, 377
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	240, 388
AhlI	ACTAGT	1 cut(s)	475
AluBI	AGCT	7 cut(s)	367, 559, 580, 593, 693, 803, 926
AluI	AGCT	7 cut(s)	367, 559, 580, 593, 693, 803, 926
Alw26I	GTCTC	5 cut(s)	36, 166, 203, 300, 648
AlwI	GGATC	2 cut(s)	303, 448
Ama87I	CYCGRG	2 cut(s)	446, 581
AoxI	GGCC	2 cut(s)	86, 313
ApeKI	GCWGC	2 cut(s)	633, 893
ApoI	RAATTY	1 cut(s)	865
AspLEI	GCGC	3 cut(s)	132, 216, 767
AspS9I	GGNCC	2 cut(s)	722, 884
AsuHPI	GGTGA	1 cut(s)	610
AvaI	CYCGRG	2 cut(s)	446, 581
AvaII	GGWCC	2 cut(s)	722, 884
BanII	GRGCYC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	645, 880
BccI	CCATC	1 cut(s)	427
BciVI	GTATCC	2 cut(s)	208, 544
BcoDI	GTCTC	5 cut(s)	36, 166, 203, 300, 648
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	4 cut(s)	344, 476, 590, 873
BfmI	CTRYAG	1 cut(s)	894
BfuI	GTATCC	2 cut(s)	208, 544
BisI	GCNGC	3 cut(s)	128, 634, 894
BlpI	GCTNAGC	1 cut(s)	689
BlsI	GCNGC	3 cut(s)	129, 635, 895
Bme18I	GGWCC	2 cut(s)	722, 884
BmeT110I	CYCGRG	2 cut(s)	446, 581
BmgT120I	GGNCC	2 cut(s)	722, 884
BmiI	GGNNCC	2 cut(s)	126, 913
BmsI	GCATC	5 cut(s)	113, 119, 418, 756, 880
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	689
BsaJI	CCNNGG	3 cut(s)	83, 120, 569
BsaWI	WCCGGW	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 377
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	83, 120, 569
BseGI	GGATG	5 cut(s)	74, 113, 483, 627, 826
BseLI	CCNNNNNNNGG	2 cut(s)	84, 377
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	6 cut(s)	40, 43, 46, 489, 604, 713
BseXI	GCAGC	2 cut(s)	645, 880
Bsh1236I	CGCG	3 cut(s)	130, 214, 293
BshFI	GGCC	2 cut(s)	88, 315
BsiHKCI	CYCGRG	2 cut(s)	446, 581
BsiSI	CCGG	2 cut(s)	312, 725
BslI	CCNNNNNNNGG	2 cut(s)	84, 377
BsmAI	GTCTC	5 cut(s)	36, 166, 203, 300, 648
BsmBI	CGTCTC	3 cut(s)	166, 203, 300
BsnI	GGCC	2 cut(s)	88, 315
BsoBI	CYCGRG	2 cut(s)	446, 581
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	5 cut(s)	308, 453, 702, 853, 898
Bsp1720I	GCTNAGC	1 cut(s)	689
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	6 cut(s)	60, 102, 128, 279, 631, 651
BspANI	GGCC	2 cut(s)	88, 315
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	3 cut(s)	130, 214, 293
BspLI	GGNNCC	2 cut(s)	126, 913
BspMAI	CTGCAG	1 cut(s)	898
BspPI	GGATC	2 cut(s)	303, 448
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	83, 120, 569
BssMI	GATC	5 cut(s)	308, 453, 702, 853, 898
BssT1I	CCWWGG	3 cut(s)	83, 120, 569
Bst4CI	ACNGT	2 cut(s)	205, 362
Bst6I	CTCTTC	4 cut(s)	17, 303, 770, 809
BstDEI	CTNAG	3 cut(s)	594, 689, 694
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	5 cut(s)	74, 113, 483, 627, 826
BstFNI	CGCG	3 cut(s)	130, 214, 293
BstHHI	GCGC	3 cut(s)	132, 216, 767
BstKTI	GATC	5 cut(s)	311, 456, 705, 856, 901
BstMAI	GTCTC	5 cut(s)	36, 166, 203, 300, 648
BstMBI	GATC	5 cut(s)	308, 453, 702, 853, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	894
BstUI	CGCG	3 cut(s)	130, 214, 293
BstV1I	GCAGC	2 cut(s)	645, 880
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	2 cut(s)	208, 544
BsuRI	GGCC	2 cut(s)	88, 315
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	5 cut(s)	74, 113, 483, 627, 826
BtsIMutI	CAGTG	1 cut(s)	358
CfoI	GCGC	3 cut(s)	132, 216, 767
Cfr13I	GGNCC	2 cut(s)	722, 884
CpoI	CGGWCCG	1 cut(s)	722
CseI	GACGC	2 cut(s)	220, 282
Csp6I	GTAC	1 cut(s)	257
CspI	CGGWCCG	1 cut(s)	722
CviAII	CATG	3 cut(s)	121, 145, 184
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	594, 689, 694
DpnI	GATC	5 cut(s)	310, 455, 704, 855, 900
DpnII	GATC	5 cut(s)	308, 453, 702, 853, 898
Eam1104I	CTCTTC	4 cut(s)	17, 303, 770, 809
EarI	CTCTTC	4 cut(s)	17, 303, 770, 809
Eco130I	CCWWGG	3 cut(s)	83, 120, 569
Eco24I	GRGCYC	1 cut(s)	863
Eco47I	GGWCC	2 cut(s)	722, 884
Eco57I	CTGAAG	1 cut(s)	830
Eco88I	CYCGRG	2 cut(s)	446, 581
EcoT14I	CCWWGG	3 cut(s)	83, 120, 569
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	3 cut(s)	83, 120, 569
Esp3I	CGTCTC	3 cut(s)	166, 203, 300
FaeI	CATG	3 cut(s)	124, 148, 187
FatI	CATG	3 cut(s)	120, 144, 183
Fnu4HI	GCNGC	3 cut(s)	128, 634, 894
FokI	GGATG	5 cut(s)	61, 100, 470, 614, 833
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	3 cut(s)	128, 634, 894
FspBI	CTAG	4 cut(s)	344, 476, 590, 873
GlaI	GCGC	3 cut(s)	131, 215, 766
GluI	GCNGC	3 cut(s)	128, 634, 894
HaeIII	GGCC	2 cut(s)	88, 315
HapII	CCGG	2 cut(s)	312, 725
HgaI	GACGC	2 cut(s)	220, 282
HhaI	GCGC	3 cut(s)	132, 216, 767
Hin1II	CATG	3 cut(s)	124, 148, 187
Hin6I	GCGC	3 cut(s)	130, 214, 765
HinP1I	GCGC	3 cut(s)	130, 214, 765
HindIII	AAGCTT	2 cut(s)	691, 924
HpaII	CCGG	2 cut(s)	312, 725
HphI	GGTGA	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	308, 468
Hpy188III	TCNNGA	3 cut(s)	208, 583, 920
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	81, 242, 246, 330
HpyCH4III	ACNGT	2 cut(s)	205, 362
HpyCH4IV	ACGT	2 cut(s)	159, 255
HpyCH4V	TGCA	4 cut(s)	358, 431, 731, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	3 cut(s)	594, 689, 694
HpySE526I	ACGT	2 cut(s)	159, 255
Hsp92II	CATG	3 cut(s)	124, 148, 187
HspAI	GCGC	3 cut(s)	130, 214, 765
Kzo9I	GATC	5 cut(s)	308, 453, 702, 853, 898
LmnI	GCTCC	4 cut(s)	104, 124, 380, 911
Lsp1109I	GCAGC	2 cut(s)	645, 880
LweI	GCATC	5 cut(s)	113, 119, 418, 756, 880
MaeI	CTAG	4 cut(s)	344, 476, 590, 873
MaeII	ACGT	2 cut(s)	159, 255
MalI	GATC	5 cut(s)	310, 455, 704, 855, 900
MboI	GATC	5 cut(s)	308, 453, 702, 853, 898
MboII	GAAGA	6 cut(s)	4, 85, 290, 787, 823, 826
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	3 cut(s)	436, 654, 865
MluI	ACGCGT	1 cut(s)	291
MmeI	TCCRAC	2 cut(s)	491, 735
MseI	TTAA	1 cut(s)	831
MspI	CCGG	2 cut(s)	312, 725
MvnI	CGCG	3 cut(s)	130, 214, 293
MwoI	GCNNNNNNNGC	1 cut(s)	364
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	5 cut(s)	308, 453, 702, 853, 898
NlaIII	CATG	3 cut(s)	124, 148, 187
NlaIV	GGNNCC	2 cut(s)	126, 913
PaeR7I	CTCGAG	2 cut(s)	446, 581
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	129, 635, 895
PspN4I	GGNNCC	2 cut(s)	126, 913
PspPI	GGNCC	2 cut(s)	722, 884
PspXI	VCTCGAGB	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
Rsr2I	CGGWCCG	1 cut(s)	722
RsrII	CGGWCCG	1 cut(s)	722
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	3 cut(s)	128, 634, 894
Sau3AI	GATC	5 cut(s)	308, 453, 702, 853, 898
Sau96I	GGNCC	2 cut(s)	722, 884
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	5 cut(s)	113, 119, 418, 756, 880
SfcI	CTRYAG	1 cut(s)	894
Sfr274I	CTCGAG	2 cut(s)	446, 581
SinI	GGWCC	2 cut(s)	722, 884
SlaI	CTCGAG	2 cut(s)	446, 581
SmlI	CTYRAG	2 cut(s)	446, 581
SmoI	CTYRAG	2 cut(s)	446, 581
SpeI	ACTAGT	1 cut(s)	475
Sse9I	AATT	3 cut(s)	436, 654, 865
SsiI	CCGC	6 cut(s)	60, 102, 128, 279, 631, 651
SspMI	CTAG	4 cut(s)	344, 476, 590, 873
StyI	CCWWGG	3 cut(s)	83, 120, 569
TaaI	ACNGT	2 cut(s)	205, 362
TaiI	ACGT	2 cut(s)	162, 258
TaqI	TCGA	7 cut(s)	207, 447, 489, 502, 582, 863, 901
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	3 cut(s)	436, 654, 865
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	1 cut(s)	365
TseI	GCWGC	2 cut(s)	633, 893
TspDTI	ATGAA	5 cut(s)	63, 133, 179, 328, 393
TspRI	CASTG	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	722, 884
XapI	RAATTY	1 cut(s)	865
XhoI	CTCGAG	2 cut(s)	446, 581
XspI	CTAG	4 cut(s)	344, 476, 590, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.