Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Forward (+)

19421397 .. 19423097

Gene Structure 1701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCGTCAGCTTATTGTTCCTCCGCCGTGGCTGTATCCGCCGCAGCCACCGCTTCCTCCGCCGCTACCTTTAATCCATTACTCTCCTCCCACTCCAATTCCCAACTCTTCTATCGCTTTACACCAAAATCCTTCAAACTCGTTGCCAATTGCCCTAATCCACTAATCCTCCACTCAAATATCCGCCGCCACCGCTTCTTCTGCGCCGCCGAAACCGAAGCTAGTTCCGCCGATGATGAAATCCAGGCATCAGTAGAAGAAGAAGAAGAGGTAGAAGAAGAAGGAGATGAAGGTGAAGAAGAAGTAGAGGAAGAAAAACAGACGACGCAAGCGAGTGGTGAAGAAGGGAGGCTTTACGTTGGGAATTTACCTTACACAATCACTTCTTCTGAGCTCTCTCAGATTTTTGGAGAAGCTGGAACTGTCGTCGATGTTCAGATTGTTTATGATAAAGTTACTGATAGAAGCAGAGGATTTGGATTTGTAACAATGGGAAGCATTGAAGAAGCTAAAGAAGCGATGCAGATGTTTAACAGCTCTCAAATTGGTGGTAGAACGGTGAAAGTGAACTTCCCGGAGGTGCCGAGAGGCGGTGAGAACGAAGTAATGAGAACCAAAATCCGTGATAATAACCGGAGTTATGTTGATAGTCCTCATAAGGTATATGCAGGAAACCTTGGTTGGAATCTAACCTCACAAGGTTTAAAGGATGCATTTGGTGATCAACCTGGTGTGCTTGGTGCTAAAGTTATCTATGAAAGAAATACTGGGAGGTCTAGGGGGTTTGGTTTCATCTCGTTCGAGTCAGCGGAAAATGTTCAGTCTGCTTTGGCTACAATGAATGGCGTGGAAGTTGAAGGACGAGCGCTGAGGCTAAATTTGGCTTCAGAGAGAGAGAAACCCACTGTGTCTCCTCCTTCCGTAGAAGAAGGAGAAACCGAGGAGGCCAGTCTAGAGAGTAACGAGGTGCTTTCGAATGTTAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

329

Amino Acids

35.74

Weight (kDa)

4.62

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	118 - 188	9.5e-21	RNA recognition motif
RRM_1	PF00076	221 - 291	1.4e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AcsI	RAATTY	2 cut(s)	364, 877
AcuI	CTGAAG	1 cut(s)	870
AfeI	AGCGCT	1 cut(s)	867
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	136, 503, 857
AjnI	CCWGG	2 cut(s)	243, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	664, 696
AluBI	AGCT	6 cut(s)	11, 221, 394, 416, 509, 537
AluI	AGCT	6 cut(s)	11, 221, 394, 416, 509, 537
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	915
Aor51HI	AGCGCT	1 cut(s)	867
AoxI	GGCC	1 cut(s)	945
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	364, 877
Asp700I	GAANNNNTTC	1 cut(s)	816
AspLEI	GCGC	2 cut(s)	206, 868
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	5 cut(s)	305, 350, 571, 605, 731
AsuII	TTCGAA	1 cut(s)	974
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	396
BbvCI	CCTCAGC	1 cut(s)	869
BbvI	GCAGC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	11
BciT130I	CCWGG	2 cut(s)	245, 729
BciVI	GTATCC	1 cut(s)	46
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	915
BfaI	CTAG	3 cut(s)	222, 777, 953
BfoI	RGCGCY	1 cut(s)	869
BfuI	GTATCC	1 cut(s)	46
BisI	GCNGC	5 cut(s)	42, 45, 63, 187, 207
BlsI	GCNGC	5 cut(s)	43, 46, 64, 188, 208
Bme1390I	CCNGG	3 cut(s)	245, 575, 729
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	3 cut(s)	245, 575, 729
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	3 cut(s)	257, 510, 700
BmuI	ACTGGG	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	869
Bpu14I	TTCGAA	1 cut(s)	974
BpuMI	CCSGG	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	27, 676, 939
BsaWI	WCCGGW	1 cut(s)	633
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 183, 895, 925
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse1I	ACTGG	2 cut(s)	772, 948
BseBI	CCWGG	2 cut(s)	245, 729
BseDI	CCNNGG	3 cut(s)	27, 676, 939
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	3 cut(s)	381, 413, 860
BseNI	ACTGG	2 cut(s)	772, 948
BseRI	GAGGAG	3 cut(s)	76, 903, 956
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	947
BshNI	GGYRCC	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	575, 634
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	915
BsnI	GGCC	1 cut(s)	947
Bsp119I	TTCGAA	1 cut(s)	974
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	721
BspANI	GGCC	1 cut(s)	947
BspCNI	CTCAG	3 cut(s)	382, 412, 861
BspLI	GGNNCC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	974
BspT107I	GGYRCC	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	772, 948
BssECI	CCNNGG	3 cut(s)	27, 676, 939
BssMI	GATC	1 cut(s)	721
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	2 cut(s)	245, 729
Bst4CI	ACNGT	3 cut(s)	424, 559, 907
Bst6I	CTCTTC	2 cut(s)	113, 261
BstBI	TTCGAA	1 cut(s)	974
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	390, 399, 869
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	715
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	2 cut(s)	206, 868
BstKTI	GATC	1 cut(s)	724
BstMAI	GTCTC	1 cut(s)	915
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 50, 59, 192, 201, 227, 515
BstNI	CCWGG	2 cut(s)	245, 729
BstSCI	CCNGG	3 cut(s)	243, 573, 727
BstV1I	GCAGC	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	947
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	715
BtsIMutI	CAGTG	1 cut(s)	903
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	2 cut(s)	206, 868
CseI	GACGC	1 cut(s)	334
CsiI	ACCWGGT	1 cut(s)	727
CviAII	CATG	1 cut(s)	987
DdeI	CTNAG	3 cut(s)	390, 399, 869
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
DraI	TTTAAA	1 cut(s)	705
Eam1104I	CTCTTC	2 cut(s)	113, 261
EarI	CTCTTC	2 cut(s)	113, 261
EciI	GGCGGA	5 cut(s)	13, 28, 49, 173, 217
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	396
Eco47III	AGCGCT	1 cut(s)	867
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	870
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	243, 727
EcoT14I	CCWWGG	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	1 cut(s)	990
FaiI	YATR	7 cut(s)	447, 642, 657, 664, 666, 756, 988
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	1 cut(s)	986
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	5 cut(s)	42, 45, 63, 187, 207
FokI	GGATG	1 cut(s)	722
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	5 cut(s)	42, 45, 63, 187, 207
FspBI	CTAG	3 cut(s)	222, 777, 953
GlaI	GCGC	2 cut(s)	205, 867
GluI	GCNGC	5 cut(s)	42, 45, 63, 187, 207
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	1 cut(s)	947
HapII	CCGG	2 cut(s)	575, 634
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	2 cut(s)	206, 868
Hin1II	CATG	1 cut(s)	990
Hin6I	GCGC	2 cut(s)	204, 866
HinP1I	GCGC	2 cut(s)	204, 866
HinfI	GANTC	2 cut(s)	685, 803
HpaII	CCGG	2 cut(s)	575, 634
HphI	GGTGA	5 cut(s)	305, 350, 571, 605, 731
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	4 cut(s)	391, 402, 438, 889
Hpy188III	TCNNGA	1 cut(s)	953
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	2 cut(s)	328, 431
HpyAV	CCTTC	7 cut(s)	142, 275, 284, 338, 851, 923, 927
HpyCH4III	ACNGT	3 cut(s)	424, 559, 907
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	523, 668, 713, 986
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 50, 59, 192, 201, 227, 515
HpyF3I	CTNAG	3 cut(s)	390, 399, 869
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	990
HspAI	GCGC	2 cut(s)	204, 866
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	1 cut(s)	721
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	3 cut(s)	257, 510, 700
MabI	ACCWGGT	1 cut(s)	727
MaeI	CTAG	3 cut(s)	222, 777, 953
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	454, 484, 959
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	5 cut(s)	97, 148, 364, 543, 877
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	1 cut(s)	662
Mph1103I	ATGCAT	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	816
MseI	TTAA	3 cut(s)	72, 531, 704
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	2 cut(s)	575, 634
MspR9I	CCNGG	3 cut(s)	245, 575, 729
MunI	CAATTG	1 cut(s)	148
MvaI	CCWGG	2 cut(s)	245, 729
MwoI	GCNNNNNNNGC	7 cut(s)	38, 50, 59, 192, 201, 227, 515
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	1 cut(s)	721
NlaIII	CATG	1 cut(s)	990
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	609
NsiI	ATGCAT	1 cut(s)	715
NspV	TTCGAA	1 cut(s)	974
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	1 cut(s)	685
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	5 cut(s)	43, 46, 64, 188, 208
PleI	GAGTC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	811
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	243, 727
PspGI	CCWGG	2 cut(s)	243, 727
PspN4I	GGNNCC	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	72, 531, 704
SatI	GCNGC	5 cut(s)	42, 45, 63, 187, 207
Sau3AI	GATC	1 cut(s)	721
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	3 cut(s)	245, 575, 729
SduI	GDGCHC	1 cut(s)	396
SexAI	ACCWGGT	1 cut(s)	727
SfaNI	GCATC	3 cut(s)	257, 510, 700
SfuI	TTCGAA	1 cut(s)	974
Sse9I	AATT	5 cut(s)	97, 148, 364, 543, 877
SspMI	CTAG	3 cut(s)	222, 777, 953
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	243, 573, 727
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	3 cut(s)	424, 559, 907
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	429, 801, 974
TasI	AATT	5 cut(s)	97, 148, 364, 543, 877
TauI	GCSGC	4 cut(s)	44, 65, 189, 209
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	3 cut(s)	72, 531, 704
Tru9I	TTAA	3 cut(s)	72, 531, 704
TscAI	CASTG	1 cut(s)	910
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	5 cut(s)	252, 303, 771, 781, 854
TspGWI	ACGGA	2 cut(s)	611, 910
TspRI	CASTG	1 cut(s)	910
XapI	RAATTY	2 cut(s)	364, 877
XbaI	TCTAGA	1 cut(s)	952
XmnI	GAANNNNTTC	1 cut(s)	816
XspI	CTAG	3 cut(s)	222, 777, 953
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.