Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000114.1

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Forward (+)

32410 .. 34026

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000114.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atggcttccacaagtaccacttgctcttcttcactttgcaacaaaatctctaacttctcactcaccccaatccccacccacttacaacctcaatttaaaccccttaaacccctgaagctgaaagcccatttctcctacttctctcgtctctcttctctccaccatttccgccgccccttttcggccttagacggcctcgaagtcgaagaaggcaatgaaagctcggaggaagaaggagaagaacaaaaggacccacaagcagaattgcttgaagaagaagaagaagaaaaagaagagccaaaggaagcagggtctgacagaagtgacgctgggaggctctatgtggggaacttgccttattctatgacttctacccagttgtctgagattttcggcgaggccggtactgtcacttattcagagattatttatgatagagttactgataggagcaggggatttgggtttgttacaatgtcgaacgttgaggaagctcaagaggccattcggatgttcgatggttctcaagtaggcggccgaactgtgagggtaaacttcccagaagtgccgagagggggtgaaagggaaattttgggacccaagataaggaatcctggctacaaggtctacatagatagccctaataagatatatgcaggaaaccttggttggggcctgacttcccagggtcttaaagatgcctttgaaggccagccagggctattgggtgccaaggtcatttatgagaggggttcaggaagatcccgaggttttggattcgtcactttcgacactgctgccgccgcagaagctgctgtgactgccatgaatggagtggaggttgatgggcgggctttgcgactaaacatggcttcagaaagagctaggactgtaactgttactccacctccagcatcggaaactagtacagaaaacacagaggccagtgaattggcttctccctcagcatctgaaactactgcagaagacactacagacagtggtgaagtggtttctcccccagcatcagaaacaactgcagaagatgcagacagcagtgaattgatttccagcgttagcatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

361

Amino Acids

38.98

Weight (kDa)

4.63

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	6 cut(s)	169, 172, 534, 801, 804, 850
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	1 cut(s)	756
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	2 cut(s)	134, 858
AfaI	GTAC	3 cut(s)	16, 406, 928
AfiI	CCNNNNNNNGG	4 cut(s)	181, 575, 606, 670
AgsI	TTSAA	2 cut(s)	272, 707
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	3 cut(s)	613, 684, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	652, 684
AluBI	AGCT	5 cut(s)	118, 222, 494, 812, 884
AluI	AGCT	5 cut(s)	118, 222, 494, 812, 884
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	756
AlwNI	CAGNNNCTG	3 cut(s)	314, 812, 971
Ama87I	CYCGRG	1 cut(s)	765
AoxI	GGCC	8 cut(s)	183, 193, 399, 501, 535, 673, 709, 942
ApeKI	GCWGC	2 cut(s)	797, 812
ApoI	RAATTY	1 cut(s)	588
AspS9I	GGNCC	3 cut(s)	250, 596, 673
AsuHPI	GGTGA	3 cut(s)	55, 590, 1016
AvaI	CYCGRG	1 cut(s)	765
AvaII	GGWCC	2 cut(s)	250, 596
BanI	GGYRCC	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	993
BbvCI	CCTCAGC	1 cut(s)	964
BbvI	GCAGC	2 cut(s)	784, 799
BccI	CCATC	2 cut(s)	512, 839
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	779, 813
BciT130I	CCWGG	3 cut(s)	615, 686, 717
BcoDI	GTCTC	1 cut(s)	152
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	2 cut(s)	885, 924
BfmI	CTRYAG	3 cut(s)	981, 993, 1038
BisI	GCNGC	6 cut(s)	172, 535, 798, 801, 804, 813
BlsI	GCNGC	6 cut(s)	173, 536, 799, 802, 805, 814
Bme1390I	CCNGG	3 cut(s)	615, 686, 717
Bme18I	GGWCC	2 cut(s)	250, 596
BmeT110I	CYCGRG	1 cut(s)	765
BmgT120I	GGNCC	3 cut(s)	250, 596, 673
BmiI	GGNNCC	5 cut(s)	252, 597, 598, 674, 730
BmrFI	CCNGG	3 cut(s)	615, 686, 717
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	5 cut(s)	688, 923, 977, 1034, 1036
BmuI	ACTGGG	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	993
BpmI	CTGGAG	1 cut(s)	894
Bpu10I	CCTNAGC	1 cut(s)	964
BpuEI	CTTGAG	2 cut(s)	480, 510
BsaJI	CCNNGG	6 cut(s)	664, 684, 685, 716, 732, 766
BsaXI	ACNNNNNCTCC	6 cut(s)	825, 855, 886, 892, 916, 922
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 575, 606, 670
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	376, 945
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	3 cut(s)	615, 686, 717
BseDI	CCNNGG	6 cut(s)	664, 684, 685, 716, 732, 766
BseGI	GGATG	1 cut(s)	516
BseLI	CCNNNNNNNGG	4 cut(s)	181, 575, 606, 670
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	375, 978
BseNI	ACTGG	2 cut(s)	376, 945
BseX3I	CGGCCG	1 cut(s)	535
BseXI	GCAGC	2 cut(s)	784, 799
BseYI	CCCAGC	2 cut(s)	329, 1021
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	8 cut(s)	185, 195, 401, 503, 537, 675, 711, 944
BshNI	GGYRCC	1 cut(s)	728
BsiEI	CGRYCG	1 cut(s)	538
BsiHKCI	CYCGRG	1 cut(s)	765
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	4 cut(s)	181, 575, 606, 670
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	8 cut(s)	185, 195, 401, 503, 537, 675, 711, 944
BsoBI	CYCGRG	1 cut(s)	765
Bsp143I	GATC	1 cut(s)	761
BspACI	CCGC	6 cut(s)	169, 172, 534, 801, 804, 850
BspANI	GGCC	8 cut(s)	185, 195, 401, 503, 537, 675, 711, 944
BspCNI	CTCAG	2 cut(s)	376, 977
BspLI	GGNNCC	5 cut(s)	252, 597, 598, 674, 730
BspMAI	CTGCAG	2 cut(s)	985, 1042
BspPI	GGATC	1 cut(s)	756
BspQI	GCTCTTC	2 cut(s)	31, 288
BspT107I	GGYRCC	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	376, 945
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	6 cut(s)	664, 684, 685, 716, 732, 766
BssMI	GATC	1 cut(s)	761
BssT1I	CCWWGG	2 cut(s)	664, 732
Bst2UI	CCWGG	3 cut(s)	615, 686, 717
Bst4CI	ACNGT	5 cut(s)	409, 544, 892, 898, 1001
Bst6I	CTCTTC	3 cut(s)	31, 157, 288
BstAPI	GCANNNNNTGC	2 cut(s)	812, 1046
BstC8I	GCNNGC	2 cut(s)	713, 852
BstDEI	CTNAG	3 cut(s)	187, 384, 964
BstF5I	GGATG	1 cut(s)	516
BstKTI	GATC	1 cut(s)	764
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	761
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	8 cut(s)	219, 500, 803, 809, 812, 821, 856, 1046
BstNI	CCWGG	3 cut(s)	615, 686, 717
BstSCI	CCNGG	3 cut(s)	613, 684, 715
BstSFI	CTRYAG	3 cut(s)	981, 993, 1038
BstV1I	GCAGC	2 cut(s)	784, 799
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	761
BstXI	CCANNNNNNTGG	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	761
BstZI	CGGCCG	1 cut(s)	535
BsuRI	GGCC	8 cut(s)	185, 195, 401, 503, 537, 675, 711, 944
BtsCI	GGATG	1 cut(s)	516
BtsI	GCAGTG	2 cut(s)	792, 1063
BtsIMutI	CAGTG	4 cut(s)	792, 952, 1006, 1063
Cac8I	GCNNGC	2 cut(s)	713, 852
CaiI	CAGNNNCTG	3 cut(s)	314, 812, 971
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	250, 596, 673
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	15, 405, 927
CviAII	CATG	2 cut(s)	826, 868
CviQI	GTAC	3 cut(s)	15, 405, 927
DdeI	CTNAG	3 cut(s)	187, 384, 964
DpnI	GATC	1 cut(s)	763
DpnII	GATC	1 cut(s)	761
DraI	TTTAAA	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	535
EagI	CGGCCG	1 cut(s)	535
Eam1104I	CTCTTC	3 cut(s)	31, 157, 288
EarI	CTCTTC	3 cut(s)	31, 157, 288
EciI	GGCGGA	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	664, 732
Eco47I	GGWCC	2 cut(s)	250, 596
Eco52I	CGGCCG	1 cut(s)	535
Eco57I	CTGAAG	2 cut(s)	134, 858
Eco88I	CYCGRG	1 cut(s)	765
EcoO109I	RGGNCCY	3 cut(s)	250, 596, 673
EcoRII	CCWGG	3 cut(s)	613, 684, 715
EcoT14I	CCWWGG	2 cut(s)	664, 732
ErhI	CCWWGG	2 cut(s)	664, 732
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	829, 871
FaiI	YATR	9 cut(s)	342, 365, 432, 632, 652, 654, 744, 827, 869
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	2 cut(s)	825, 867
FauI	CCCGC	1 cut(s)	843
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	6 cut(s)	172, 535, 798, 801, 804, 813
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	6 cut(s)	172, 535, 798, 801, 804, 813
FspBI	CTAG	2 cut(s)	885, 924
GluI	GCNGC	6 cut(s)	172, 535, 798, 801, 804, 813
GsaI	CCCAGC	2 cut(s)	333, 1025
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	8 cut(s)	185, 195, 401, 503, 537, 675, 711, 944
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	829, 871
HinfI	GANTC	2 cut(s)	610, 777
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	3 cut(s)	55, 590, 1016
Hpy166II	GTNNAC	2 cut(s)	553, 628
Hpy188III	TCNNGA	3 cut(s)	497, 756, 765
Hpy8I	GTNNAC	2 cut(s)	553, 628
HpyAV	CCTTC	3 cut(s)	203, 227, 701
HpyCH4III	ACNGT	5 cut(s)	409, 544, 892, 898, 1001
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	5 cut(s)	39, 656, 983, 1040, 1049
HpyF10VI	GCNNNNNNNGC	8 cut(s)	219, 500, 803, 809, 812, 821, 856, 1046
HpyF3I	CTNAG	3 cut(s)	187, 384, 964
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	2 cut(s)	829, 871
KflI	GGGWCCC	1 cut(s)	596
Kzo9I	GATC	1 cut(s)	761
LguI	GCTCTTC	2 cut(s)	31, 288
LmnI	GCTCC	1 cut(s)	450
Lsp1109I	GCAGC	2 cut(s)	784, 799
LweI	GCATC	5 cut(s)	688, 923, 977, 1034, 1036
MaeI	CTAG	2 cut(s)	885, 924
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	8 cut(s)	323, 409, 439, 469, 781, 817, 892, 898
MalI	GATC	1 cut(s)	763
MboI	GATC	1 cut(s)	761
MflI	RGATCY	1 cut(s)	761
MluCI	AATT	5 cut(s)	92, 263, 588, 950, 1061
MseI	TTAA	3 cut(s)	96, 105, 693
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	3 cut(s)	615, 686, 717
MvaI	CCWGG	3 cut(s)	615, 686, 717
MwoI	GCNNNNNNNGC	8 cut(s)	219, 500, 803, 809, 812, 821, 856, 1046
NdeII	GATC	1 cut(s)	761
NlaIII	CATG	2 cut(s)	829, 871
NlaIV	GGNNCC	5 cut(s)	252, 597, 598, 674, 730
NmeAIII	GCCGAG	1 cut(s)	594
NmuCI	GTSAC	4 cut(s)	323, 409, 781, 817
PasI	CCCWGGG	1 cut(s)	685
PciSI	GCTCTTC	2 cut(s)	31, 288
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PfeI	GAWTC	2 cut(s)	610, 777
PkrI	GCNGC	6 cut(s)	173, 536, 799, 802, 805, 814
PpuMI	RGGWCCY	2 cut(s)	250, 596
Psp1406I	AACGTT	1 cut(s)	483
Psp5II	RGGWCCY	2 cut(s)	250, 596
Psp6I	CCWGG	3 cut(s)	613, 684, 715
PspFI	CCCAGC	2 cut(s)	329, 1021
PspGI	CCWGG	3 cut(s)	613, 684, 715
PspN4I	GGNNCC	5 cut(s)	252, 597, 598, 674, 730
PspPI	GGNCC	3 cut(s)	250, 596, 673
PspPPI	RGGWCCY	2 cut(s)	250, 596
PstI	CTGCAG	2 cut(s)	985, 1042
PstNI	CAGNNNCTG	3 cut(s)	314, 812, 971
PsuI	RGATCY	1 cut(s)	761
RsaI	GTAC	3 cut(s)	16, 406, 928
RsaNI	GTAC	3 cut(s)	15, 405, 927
RseI	CAYNNNNRTG	1 cut(s)	509
SapI	GCTCTTC	2 cut(s)	31, 288
SaqAI	TTAA	3 cut(s)	96, 105, 693
SatI	GCNGC	6 cut(s)	172, 535, 798, 801, 804, 813
Sau3AI	GATC	1 cut(s)	761
Sau96I	GGNCC	3 cut(s)	250, 596, 673
ScrFI	CCNGG	3 cut(s)	615, 686, 717
SfaNI	GCATC	5 cut(s)	688, 923, 977, 1034, 1036
SfcI	CTRYAG	3 cut(s)	981, 993, 1038
SinI	GGWCC	2 cut(s)	250, 596
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	495, 525
SmoI	CTYRAG	2 cut(s)	495, 525
SpeI	ACTAGT	1 cut(s)	923
Sse9I	AATT	5 cut(s)	92, 263, 588, 950, 1061
SsiI	CCGC	6 cut(s)	169, 172, 534, 801, 804, 850
SspMI	CTAG	2 cut(s)	885, 924
StyD4I	CCNGG	3 cut(s)	613, 684, 715
StyI	CCWWGG	2 cut(s)	664, 732
TaaI	ACNGT	5 cut(s)	409, 544, 892, 898, 1001
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	5 cut(s)	198, 204, 479, 516, 789
TasI	AATT	5 cut(s)	92, 263, 588, 950, 1061
TatI	WGTACW	1 cut(s)	926
TauI	GCSGC	4 cut(s)	174, 537, 803, 806
TfiI	GAWTC	2 cut(s)	610, 777
Tru1I	TTAA	3 cut(s)	96, 105, 693
Tru9I	TTAA	3 cut(s)	96, 105, 693
TscAI	CASTG	4 cut(s)	799, 952, 1006, 1063
TseFI	GTSAC	4 cut(s)	323, 409, 781, 817
TseI	GCWGC	2 cut(s)	797, 812
Tsp45I	GTSAC	4 cut(s)	323, 409, 781, 817
TspDTI	ATGAA	2 cut(s)	231, 842
TspRI	CASTG	4 cut(s)	799, 952, 1006, 1063
VpaK11BI	GGWCC	2 cut(s)	250, 596
XapI	RAATTY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	2 cut(s)	885, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.