Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Reverse (-)

22288647 .. 22290991

Gene Structure 2345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCCCATGAGAGCCACCTCTTTACGAAGCTCAACCTTCTTCCCCAAAAACATTTCTTTACCAATTCCTCTAGTAATGTCGACCTCTTCTCTATCAGTGGCTTCCACAAGTACTACTTGCTCTTCTTCACTTTGCAACAAAATCTCTAACTTTTCACTCACCCCAATCCCCACCCACTTACAACCTCAATTTAAACCCCTTAAACCCCTGAAGCTGAAAGCCCATTTCTCCTACTTCTCTCGTCTCTCATCTCTCCACCATTTCCGCCGCCCCTTTTCGGCCTTAGACGGCCTCGAAGTCGAAGAAGGAAATGAAAGCTCGGAGGAAGAAGGAGAAGAACAAAAGGACCCACAAGCAGAATTGCTTGAAGAAGACGAAGTAGAAGAAGAAAAAGAAGAGCCAAAGGAAGCAGGGTCTGACAGAAGTGACGCTGGGAGGCTCTATGTGGGGAACTTGCCTTATTCTATGACTTCTACCCAGTTGTCTGAGATTTTCGGCGAGGCCGGTACTGTCACTTATTCAGAGATTATTTATGATAGAGTTACTGATAGGAGCAGGGGATTTGGGTTTGTTACAATGTCGAACGTTGAGGAAGCTCAAGAGGCCATTCGGATGTTCGATGGTTCTCAAGTAGGCGGCCGAACTGTGAGGGTAAACTTCCCAGAAGTGCCGAGAGGGGGTGAAAGGGAAATTTTGGGACCCAAGATAAGGAATCCTGGCTACAAGGTCTACATAGATAGCCCTAATAAGATCTATGCGGGAAACCTTGGTTGGGGCCTGACTTCCCAGGGTCTTAAAGATGCCTTTGAAGGCCAGCCAGGGCTGTTGGGTGCCAAGGTCATTTATGAGAGGGGTTCAGGAAGATCTCGAGGTTTTGGATTCGTCACTTTCGACACTGCTGCCGCTGCAGAAGCTGCTGTGACTGCCATGAATGGAGTGGAGGTTGATGGGCGGGCTTTGCGACTAAACATGGCTTCAGAAAGGGCTAGGATTGTAACTGTTACTCCACCTCCAGCATCGGAAACTAGTACAGAAAACACAGAGGCCAGTGAATTGGCTTCTCCCTCAGCATCTGAAACTACTGCAGAAGACACTACAGACAGTGGTGAAGTGGTTTCTTCCCCAGCATCAGAAACAACTGCAGAAGATGCAGACAGCAGTGAATTGATTTCCAGTGTTAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

395

Amino Acids

42.64

Weight (kDa)

4.71

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	147 - 217	4e-20	RNA recognition motif
RRM_1	PF00076	251 - 321	3e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	830
AccI	GTMKAC	2 cut(s)	80, 729
AciI	CCGC	6 cut(s)	265, 268, 636, 758, 903, 952
AclI	AACGTT	1 cut(s)	585
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	690
AcuI	CTGAAG	2 cut(s)	230, 960
AfaI	GTAC	3 cut(s)	112, 508, 1030
AfiI	CCNNNNNNNGG	4 cut(s)	277, 677, 708, 772
AgsI	TTSAA	2 cut(s)	368, 809
AhlI	ACTAGT	1 cut(s)	1025
AjnI	CCWGG	3 cut(s)	715, 786, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	754, 786
AluBI	AGCT	5 cut(s)	30, 214, 318, 596, 914
AluI	AGCT	5 cut(s)	30, 214, 318, 596, 914
Alw26I	GTCTC	1 cut(s)	248
AlwNI	CAGNNNCTG	3 cut(s)	416, 914, 1073
Ama87I	CYCGRG	1 cut(s)	867
AoxI	GGCC	8 cut(s)	279, 289, 501, 603, 637, 775, 811, 1044
ApeKI	GCWGC	3 cut(s)	899, 905, 914
ApoI	RAATTY	1 cut(s)	690
AspS9I	GGNCC	3 cut(s)	346, 698, 775
AsuHPI	GGTGA	3 cut(s)	151, 692, 1118
AvaI	CYCGRG	1 cut(s)	867
AvaII	GGWCC	2 cut(s)	346, 698
BanI	GGYRCC	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	378, 1095
BbvCI	CCTCAGC	1 cut(s)	1066
BbvI	GCAGC	3 cut(s)	886, 892, 901
BccI	CCATC	2 cut(s)	614, 941
BceAI	ACGGC	1 cut(s)	304
BcgI	CGANNNNNNTGC	2 cut(s)	881, 915
BciT130I	CCWGG	3 cut(s)	717, 788, 819
BcoDI	GTCTC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	1025
BfaI	CTAG	3 cut(s)	71, 987, 1026
BfmI	CTRYAG	4 cut(s)	906, 1083, 1095, 1140
BglII	AGATCT	2 cut(s)	750, 863
BisI	GCNGC	6 cut(s)	268, 637, 900, 903, 906, 915
BlsI	GCNGC	6 cut(s)	269, 638, 901, 904, 907, 916
BmcAI	AGTACT	1 cut(s)	112
Bme1390I	CCNGG	3 cut(s)	717, 788, 819
Bme18I	GGWCC	2 cut(s)	346, 698
BmeT110I	CYCGRG	1 cut(s)	867
BmgT120I	GGNCC	3 cut(s)	346, 698, 775
BmiI	GGNNCC	5 cut(s)	348, 699, 700, 776, 832
BmrFI	CCNGG	3 cut(s)	717, 788, 819
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	5 cut(s)	790, 1025, 1079, 1136, 1138
BmuI	ACTGGG	1 cut(s)	472
BpiI	GAAGAC	2 cut(s)	378, 1095
BpmI	CTGGAG	1 cut(s)	996
Bpu10I	CCTNAGC	1 cut(s)	1066
BpuEI	CTTGAG	2 cut(s)	582, 612
BsaJI	CCNNGG	5 cut(s)	766, 786, 787, 818, 834
BsaXI	ACNNNNNCTCC	6 cut(s)	927, 957, 988, 994, 1018, 1024
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 677, 708, 772
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	3 cut(s)	478, 1047, 1173
BseBI	CCWGG	3 cut(s)	717, 788, 819
BseDI	CCNNGG	5 cut(s)	766, 786, 787, 818, 834
BseGI	GGATG	1 cut(s)	618
BseLI	CCNNNNNNNGG	4 cut(s)	277, 677, 708, 772
BseMII	CTCAG	2 cut(s)	477, 1080
BseNI	ACTGG	3 cut(s)	478, 1047, 1173
BseX3I	CGGCCG	1 cut(s)	637
BseXI	GCAGC	3 cut(s)	886, 892, 901
BseYI	CCCAGC	2 cut(s)	431, 1123
Bsh1285I	CGRYCG	1 cut(s)	640
BshFI	GGCC	8 cut(s)	281, 291, 503, 605, 639, 777, 813, 1046
BshNI	GGYRCC	1 cut(s)	830
BsiEI	CGRYCG	1 cut(s)	640
BsiHKCI	CYCGRG	1 cut(s)	867
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	4 cut(s)	277, 677, 708, 772
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	8 cut(s)	281, 291, 503, 605, 639, 777, 813, 1046
BsoBI	CYCGRG	1 cut(s)	867
Bsp143I	GATC	2 cut(s)	750, 863
BspACI	CCGC	6 cut(s)	265, 268, 636, 758, 903, 952
BspANI	GGCC	8 cut(s)	281, 291, 503, 605, 639, 777, 813, 1046
BspCNI	CTCAG	2 cut(s)	478, 1079
BspLI	GGNNCC	5 cut(s)	348, 699, 700, 776, 832
BspMAI	CTGCAG	3 cut(s)	910, 1087, 1144
BspQI	GCTCTTC	2 cut(s)	127, 390
BspT107I	GGYRCC	1 cut(s)	830
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	3 cut(s)	478, 1047, 1173
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	5 cut(s)	766, 786, 787, 818, 834
BssMI	GATC	2 cut(s)	750, 863
BssT1I	CCWWGG	2 cut(s)	766, 834
Bst2UI	CCWGG	3 cut(s)	717, 788, 819
Bst4CI	ACNGT	4 cut(s)	511, 646, 1000, 1103
Bst6I	CTCTTC	3 cut(s)	91, 127, 390
BstAPI	GCANNNNNTGC	2 cut(s)	914, 1148
BstC8I	GCNNGC	2 cut(s)	815, 954
BstDEI	CTNAG	3 cut(s)	283, 486, 1066
BstF5I	GGATG	1 cut(s)	618
BstKTI	GATC	2 cut(s)	753, 866
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	750, 863
BstMCI	CGRYCG	1 cut(s)	640
BstMWI	GCNNNNNNNGC	7 cut(s)	602, 905, 911, 914, 923, 958, 1148
BstNI	CCWGG	3 cut(s)	717, 788, 819
BstSCI	CCNGG	3 cut(s)	715, 786, 817
BstSFI	CTRYAG	4 cut(s)	906, 1083, 1095, 1140
BstV1I	GCAGC	3 cut(s)	886, 892, 901
BstV2I	GAAGAC	2 cut(s)	378, 1095
BstX2I	RGATCY	2 cut(s)	750, 863
BstXI	CCANNNNNNTGG	1 cut(s)	1054
BstYI	RGATCY	2 cut(s)	750, 863
BstZI	CGGCCG	1 cut(s)	637
BsuRI	GGCC	8 cut(s)	281, 291, 503, 605, 639, 777, 813, 1046
BtsCI	GGATG	1 cut(s)	618
BtsI	GCAGTG	2 cut(s)	894, 1165
BtsIMutI	CAGTG	6 cut(s)	102, 894, 1054, 1108, 1165, 1180
Cac8I	GCNNGC	2 cut(s)	815, 954
CaiI	CAGNNNCTG	3 cut(s)	416, 914, 1073
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	3 cut(s)	346, 698, 775
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	111, 507, 1029
CviAII	CATG	3 cut(s)	7, 928, 970
CviQI	GTAC	3 cut(s)	111, 507, 1029
DdeI	CTNAG	3 cut(s)	283, 486, 1066
DpnI	GATC	2 cut(s)	752, 865
DpnII	GATC	2 cut(s)	750, 863
DraI	TTTAAA	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	637
EagI	CGGCCG	1 cut(s)	637
Eam1104I	CTCTTC	3 cut(s)	91, 127, 390
EarI	CTCTTC	3 cut(s)	91, 127, 390
EciI	GGCGGA	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	637
Eco130I	CCWWGG	2 cut(s)	766, 834
Eco47I	GGWCC	2 cut(s)	346, 698
Eco52I	CGGCCG	1 cut(s)	637
Eco57I	CTGAAG	2 cut(s)	230, 960
Eco88I	CYCGRG	1 cut(s)	867
EcoO109I	RGGNCCY	3 cut(s)	346, 698, 775
EcoRII	CCWGG	3 cut(s)	715, 786, 817
EcoT14I	CCWWGG	2 cut(s)	766, 834
ErhI	CCWWGG	2 cut(s)	766, 834
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	3 cut(s)	10, 931, 973
FaiI	YATR	9 cut(s)	8, 444, 467, 534, 734, 756, 846, 929, 971
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	3 cut(s)	6, 927, 969
FauI	CCCGC	2 cut(s)	751, 945
FblI	GTMKAC	2 cut(s)	80, 729
Fnu4HI	GCNGC	6 cut(s)	268, 637, 900, 903, 906, 915
FokI	GGATG	1 cut(s)	625
Fsp4HI	GCNGC	6 cut(s)	268, 637, 900, 903, 906, 915
FspBI	CTAG	3 cut(s)	71, 987, 1026
GluI	GCNGC	6 cut(s)	268, 637, 900, 903, 906, 915
GsaI	CCCAGC	2 cut(s)	435, 1127
GsuI	CTGGAG	1 cut(s)	996
HaeIII	GGCC	8 cut(s)	281, 291, 503, 605, 639, 777, 813, 1046
HapII	CCGG	1 cut(s)	504
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	10, 931, 973
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	712, 879
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	3 cut(s)	151, 692, 1118
Hpy166II	GTNNAC	3 cut(s)	81, 655, 730
Hpy188III	TCNNGA	3 cut(s)	599, 858, 867
Hpy8I	GTNNAC	3 cut(s)	81, 655, 730
HpyAV	CCTTC	4 cut(s)	46, 299, 323, 803
HpyCH4III	ACNGT	4 cut(s)	511, 646, 1000, 1103
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	5 cut(s)	135, 908, 1085, 1142, 1151
HpyF10VI	GCNNNNNNNGC	7 cut(s)	602, 905, 911, 914, 923, 958, 1148
HpyF3I	CTNAG	3 cut(s)	283, 486, 1066
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	10, 931, 973
KflI	GGGWCCC	1 cut(s)	698
Kzo9I	GATC	2 cut(s)	750, 863
LguI	GCTCTTC	2 cut(s)	127, 390
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	3 cut(s)	886, 892, 901
LweI	GCATC	5 cut(s)	790, 1025, 1079, 1136, 1138
MaeI	CTAG	3 cut(s)	71, 987, 1026
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	8 cut(s)	425, 511, 541, 571, 883, 919, 994, 1000
MalI	GATC	2 cut(s)	752, 865
MboI	GATC	2 cut(s)	750, 863
MflI	RGATCY	2 cut(s)	750, 863
MluCI	AATT	6 cut(s)	63, 188, 359, 690, 1052, 1163
MseI	TTAA	3 cut(s)	192, 201, 795
MslI	CAYNNNNRTG	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	3 cut(s)	717, 788, 819
MvaI	CCWGG	3 cut(s)	717, 788, 819
MwoI	GCNNNNNNNGC	7 cut(s)	602, 905, 911, 914, 923, 958, 1148
NdeII	GATC	2 cut(s)	750, 863
NlaIII	CATG	3 cut(s)	10, 931, 973
NlaIV	GGNNCC	5 cut(s)	348, 699, 700, 776, 832
NmeAIII	GCCGAG	1 cut(s)	696
NmuCI	GTSAC	4 cut(s)	425, 511, 883, 919
PaeR7I	CTCGAG	1 cut(s)	867
PasI	CCCWGGG	1 cut(s)	787
PciSI	GCTCTTC	2 cut(s)	127, 390
PcsI	WCGNNNNNNNCGW	1 cut(s)	888
PfeI	GAWTC	2 cut(s)	712, 879
PkrI	GCNGC	6 cut(s)	269, 638, 901, 904, 907, 916
PpuMI	RGGWCCY	2 cut(s)	346, 698
Psp1406I	AACGTT	1 cut(s)	585
Psp5II	RGGWCCY	2 cut(s)	346, 698
Psp6I	CCWGG	3 cut(s)	715, 786, 817
PspFI	CCCAGC	2 cut(s)	431, 1123
PspGI	CCWGG	3 cut(s)	715, 786, 817
PspN4I	GGNNCC	5 cut(s)	348, 699, 700, 776, 832
PspPI	GGNCC	3 cut(s)	346, 698, 775
PspPPI	RGGWCCY	2 cut(s)	346, 698
PstI	CTGCAG	3 cut(s)	910, 1087, 1144
PstNI	CAGNNNCTG	3 cut(s)	416, 914, 1073
PsuI	RGATCY	2 cut(s)	750, 863
RsaI	GTAC	3 cut(s)	112, 508, 1030
RsaNI	GTAC	3 cut(s)	111, 507, 1029
RseI	CAYNNNNRTG	1 cut(s)	611
SalI	GTCGAC	1 cut(s)	79
SapI	GCTCTTC	2 cut(s)	127, 390
SaqAI	TTAA	3 cut(s)	192, 201, 795
SatI	GCNGC	6 cut(s)	268, 637, 900, 903, 906, 915
Sau3AI	GATC	2 cut(s)	750, 863
Sau96I	GGNCC	3 cut(s)	346, 698, 775
ScaI	AGTACT	1 cut(s)	112
ScrFI	CCNGG	3 cut(s)	717, 788, 819
SfaNI	GCATC	5 cut(s)	790, 1025, 1079, 1136, 1138
SfcI	CTRYAG	4 cut(s)	906, 1083, 1095, 1140
Sfr274I	CTCGAG	1 cut(s)	867
SinI	GGWCC	2 cut(s)	346, 698
SlaI	CTCGAG	1 cut(s)	867
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	3 cut(s)	597, 627, 867
SmoI	CTYRAG	3 cut(s)	597, 627, 867
SpeI	ACTAGT	1 cut(s)	1025
Sse9I	AATT	6 cut(s)	63, 188, 359, 690, 1052, 1163
SsiI	CCGC	6 cut(s)	265, 268, 636, 758, 903, 952
SspMI	CTAG	3 cut(s)	71, 987, 1026
StyD4I	CCNGG	3 cut(s)	715, 786, 817
StyI	CCWWGG	2 cut(s)	766, 834
TaaI	ACNGT	4 cut(s)	511, 646, 1000, 1103
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	7 cut(s)	80, 294, 300, 581, 618, 868, 891
TasI	AATT	6 cut(s)	63, 188, 359, 690, 1052, 1163
TatI	WGTACW	2 cut(s)	110, 1028
TauI	GCSGC	3 cut(s)	270, 639, 905
TfiI	GAWTC	2 cut(s)	712, 879
Tru1I	TTAA	3 cut(s)	192, 201, 795
Tru9I	TTAA	3 cut(s)	192, 201, 795
TscAI	CASTG	6 cut(s)	102, 901, 1054, 1108, 1165, 1180
TseFI	GTSAC	4 cut(s)	425, 511, 883, 919
TseI	GCWGC	3 cut(s)	899, 905, 914
Tsp45I	GTSAC	4 cut(s)	425, 511, 883, 919
TspDTI	ATGAA	2 cut(s)	327, 944
TspRI	CASTG	6 cut(s)	102, 901, 1054, 1108, 1165, 1180
VpaK11BI	GGWCC	2 cut(s)	346, 698
XapI	RAATTY	1 cut(s)	690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XhoI	CTCGAG	1 cut(s)	867
XmiI	GTMKAC	2 cut(s)	80, 729
XspI	CTAG	3 cut(s)	71, 987, 1026
ZrmI	AGTACT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.