Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Reverse (-)

14112752 .. 14114985

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCGACCTTCTCCCTCAAAACATTTCTTACCAATTCTTCCATGGCTTCCACCAGTGCTACTTGCTCTTCTTCACTTTGCAACAAAATCTCCAACTTCTCAGTCGTTCGCTCACTCACCCATATTCCAGCTCACTTACAACCTCAGTTCAAACCCCCTAAACCCCTTAAACCCCTGAGGCTCAAAGCCCATTGCTCTCTCTTCTCTCGCCTCTCTTCTCTCCACCATTTCCGCCGCCCCTGTTCCGCCTTAGACGGCCTCGAAGTCGAAGAAGGCAATGAAAGCTCGGAGGAAGAAAAGGACCCACAAGCAGAATTGCTTGAAGAAGAAGAAGGAGGAGAGGAAGAGCCAAAGGGGGAAGCAGGGTCTGACGGAAGTGACGCTGGGAGGCTCTACGTGGGGAACTTGCCTTATTCTATGACTTCTACCCAGTTGTCTGAGATTTTCGGCGAGGCGGGTACTGTGACTTATTCTGAGATTATTTATGATAGAGTTACTGATAGGAGCAGGGGTTTTGGGTTTGTTACAATGGCGAATGTTGAGGAAGCTCAAGAGGCCATTCGGATGTTCGACGGCTCTCAAGTAGGCGGACGAACTGTGAGGGTAAACTTCCCGGAAGTGCCAAGAGGAGGTGAAAGGGAAATTTTGGGACCTAAGATGAGGAATACCGGCTACAAGGTGTACATAGATAGTCCTAATAAGATCTATGCAGGGAACCTTGGTTGGGGCCTGACATCCCAGGGTCTTAAGGATGCCTTTGAAGGACAGCCAGGATTATTGGGTGCCAAGGTCATTTATGAGAGGGGCTCTGGAAGATCCCGAGGTTTTGGATTCGTCACTTTTGACACTGCTGCCAATGCAGAAGCTGCTGTGACTGCTATGAACGGAGTGGAGGTTGATGGGCGGGAATTGCGACTAAACATGGCTTCAGAAAGAGCTAGGACTGTAACTGTTACTCCACCTCCAGCAGCAGAAACTAGTACAGAAAACACAGAGGCCAGTGAACTGGTTTCTCCCTCAGCATCTGAAACTACTGCAGAAGACACTACAGACAGCGGTGAAGTGGTTTCTTCCCCAGGATCAGAATCAACTGCAGAAGATGCAGACAGCAGTGAATTGGTTTCCAGTGTTAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

380

Amino Acids

40.6

Weight (kDa)

4.75

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	131 - 201	1.7e-20	RNA recognition motif
RRM_1	PF00076	235 - 305	1.2e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	782
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	7 cut(s)	232, 235, 246, 455, 588, 904, 1056
AclWI	GGATC	2 cut(s)	810, 1087
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	1 cut(s)	912
AfaI	GTAC	3 cut(s)	460, 683, 982
AfiI	CCNNNNNNNGG	2 cut(s)	629, 724
AflII	CTTAAG	1 cut(s)	746
AgsI	TTSAA	3 cut(s)	151, 323, 761
AhlI	ACTAGT	1 cut(s)	977
AjnI	CCWGG	3 cut(s)	738, 769, 1075
AluBI	AGCT	5 cut(s)	131, 285, 548, 866, 938
AluI	AGCT	5 cut(s)	131, 285, 548, 866, 938
AlwI	GGATC	2 cut(s)	810, 1087
AlwNI	CAGNNNCTG	3 cut(s)	368, 866, 1025
Ama87I	CYCGRG	1 cut(s)	819
AoxI	GGCC	4 cut(s)	256, 555, 727, 996
ApeKI	GCWGC	3 cut(s)	851, 866, 968
ApoI	RAATTY	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	301, 650, 727
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	3 cut(s)	109, 644, 1070
AvaI	CYCGRG	1 cut(s)	819
AvaII	GGWCC	2 cut(s)	301, 650
AxyI	CCTNAGG	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	782
BanII	GRGCYC	1 cut(s)	809
BbsI	GAAGAC	1 cut(s)	1047
BbvCI	CCTCAGC	1 cut(s)	1018
BbvI	GCAGC	3 cut(s)	838, 853, 980
BccI	CCATC	1 cut(s)	893
BceAI	ACGGC	2 cut(s)	271, 589
BciT130I	CCWGG	3 cut(s)	740, 771, 1077
BcnI	CCSGG	1 cut(s)	614
BcuI	ACTAGT	1 cut(s)	977
BfaI	CTAG	2 cut(s)	939, 978
BfmI	CTRYAG	3 cut(s)	1035, 1047, 1092
BfrI	CTTAAG	1 cut(s)	746
BglII	AGATCT	1 cut(s)	702
BisI	GCNGC	4 cut(s)	235, 852, 867, 969
BlsI	GCNGC	4 cut(s)	236, 853, 868, 970
Bme1390I	CCNGG	4 cut(s)	614, 740, 771, 1077
Bme18I	GGWCC	2 cut(s)	301, 650
BmeT110I	CYCGRG	1 cut(s)	819
BmgT120I	GGNCC	3 cut(s)	301, 650, 727
BmiI	GGNNCC	5 cut(s)	303, 651, 716, 728, 784
BmrFI	CCNGG	4 cut(s)	614, 740, 771, 1077
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	3 cut(s)	742, 1031, 1090
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	1047
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
BpmI	CTGGAG	1 cut(s)	948
Bpu10I	CCTNAGC	1 cut(s)	1018
BpuEI	CTTGAG	2 cut(s)	534, 564
BpuMI	CCSGG	1 cut(s)	614
BsaAI	YACGTR	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	1084
BsaJI	CCNNGG	7 cut(s)	42, 718, 738, 739, 786, 820, 1075
Bsc4I	CCNNNNNNNGG	2 cut(s)	629, 724
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	5 cut(s)	54, 430, 999, 1011, 1125
Bse21I	CCTNAGG	1 cut(s)	176
Bse3DI	GCAATG	2 cut(s)	190, 283
Bse8I	GATNNNNATC	1 cut(s)	1084
BseBI	CCWGG	3 cut(s)	740, 771, 1077
BseDI	CCNNGG	7 cut(s)	42, 718, 738, 739, 786, 820, 1075
BseGI	GGATG	3 cut(s)	570, 734, 757
BseJI	GATNNNNATC	1 cut(s)	1084
BseLI	CCNNNNNNNGG	2 cut(s)	629, 724
BseMI	GCAATG	2 cut(s)	190, 283
BseMII	CTCAG	6 cut(s)	114, 158, 167, 429, 465, 1032
BseNI	ACTGG	5 cut(s)	54, 430, 999, 1011, 1125
BseRI	GAGGAG	2 cut(s)	351, 642
BseXI	GCAGC	3 cut(s)	838, 853, 980
BseYI	CCCAGC	1 cut(s)	383
BshFI	GGCC	4 cut(s)	258, 557, 729, 998
BshNI	GGYRCC	1 cut(s)	782
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	614, 669
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	2 cut(s)	629, 724
BsmFI	GGGAC	1 cut(s)	663
BsnI	GGCC	4 cut(s)	258, 557, 729, 998
BsoBI	CYCGRG	1 cut(s)	819
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	702, 815, 1079
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	7 cut(s)	232, 235, 246, 455, 588, 904, 1056
BspANI	GGCC	4 cut(s)	258, 557, 729, 998
BspCNI	CTCAG	6 cut(s)	113, 157, 168, 430, 466, 1031
BspLI	GGNNCC	5 cut(s)	303, 651, 716, 728, 784
BspMAI	CTGCAG	2 cut(s)	1039, 1096
BspPI	GGATC	2 cut(s)	810, 1087
BspQI	GCTCTTC	2 cut(s)	73, 339
BspT107I	GGYRCC	1 cut(s)	782
BspTI	CTTAAG	1 cut(s)	746
BsrDI	GCAATG	2 cut(s)	190, 283
BsrFI	RCCGGY	1 cut(s)	668
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	5 cut(s)	54, 430, 999, 1011, 1125
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	7 cut(s)	42, 718, 738, 739, 786, 820, 1075
BssMI	GATC	3 cut(s)	702, 815, 1079
BssT1I	CCWWGG	3 cut(s)	42, 718, 786
Bst2UI	CCWGG	3 cut(s)	740, 771, 1077
Bst4CI	ACNGT	4 cut(s)	463, 598, 946, 952
Bst6I	CTCTTC	4 cut(s)	73, 206, 220, 339
BstAFI	CTTAAG	1 cut(s)	746
BstAPI	GCANNNNNTGC	2 cut(s)	866, 1100
BstAUI	TGTACA	1 cut(s)	681
BstBAI	YACGTR	1 cut(s)	397
BstDEI	CTNAG	8 cut(s)	100, 144, 176, 250, 438, 474, 654, 1018
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	570, 734, 757
BstKTI	GATC	3 cut(s)	705, 818, 1082
BstMBI	GATC	3 cut(s)	702, 815, 1079
BstMWI	GCNNNNNNNGC	7 cut(s)	282, 554, 857, 866, 875, 910, 1100
BstNI	CCWGG	3 cut(s)	740, 771, 1077
BstSCI	CCNGG	4 cut(s)	612, 738, 769, 1075
BstSFI	CTRYAG	3 cut(s)	1035, 1047, 1092
BstV1I	GCAGC	3 cut(s)	838, 853, 980
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	2 cut(s)	702, 815
BstXI	CCANNNNNNTGG	1 cut(s)	1006
BstYI	RGATCY	2 cut(s)	702, 815
Bsu36I	CCTNAGG	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	258, 557, 729, 998
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	570, 734, 757
BtsI	GCAGTG	2 cut(s)	846, 1117
BtsIMutI	CAGTG	5 cut(s)	61, 846, 1006, 1117, 1132
CaiI	CAGNNNCTG	3 cut(s)	368, 866, 1025
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	3 cut(s)	301, 650, 727
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	459, 682, 981
CviAII	CATG	2 cut(s)	43, 922
CviQI	GTAC	3 cut(s)	459, 682, 981
DdeI	CTNAG	8 cut(s)	100, 144, 176, 250, 438, 474, 654, 1018
DpnI	GATC	3 cut(s)	704, 817, 1081
DpnII	GATC	3 cut(s)	702, 815, 1079
Eam1104I	CTCTTC	4 cut(s)	73, 206, 220, 339
EarI	CTCTTC	4 cut(s)	73, 206, 220, 339
EciI	GGCGGA	3 cut(s)	221, 235, 603
Eco130I	CCWWGG	3 cut(s)	42, 718, 786
Eco24I	GRGCYC	1 cut(s)	809
Eco47I	GGWCC	2 cut(s)	301, 650
Eco57I	CTGAAG	1 cut(s)	912
Eco81I	CCTNAGG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	819
EcoO109I	RGGNCCY	3 cut(s)	301, 650, 727
EcoRII	CCWGG	3 cut(s)	738, 769, 1075
EcoT14I	CCWWGG	3 cut(s)	42, 718, 786
EcoT38I	GRGCYC	1 cut(s)	809
ErhI	CCWWGG	3 cut(s)	42, 718, 786
FaeI	CATG	2 cut(s)	46, 925
FaiI	YATR	9 cut(s)	44, 123, 419, 486, 686, 708, 798, 881, 923
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	2 cut(s)	42, 921
FauI	CCCGC	2 cut(s)	448, 897
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	235, 852, 867, 969
FokI	GGATG	3 cut(s)	577, 721, 764
FriOI	GRGCYC	1 cut(s)	809
Fsp4HI	GCNGC	4 cut(s)	235, 852, 867, 969
FspBI	CTAG	2 cut(s)	939, 978
GluI	GCNGC	4 cut(s)	235, 852, 867, 969
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	948
HaeIII	GGCC	4 cut(s)	258, 557, 729, 998
HapII	CCGG	2 cut(s)	614, 669
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	46, 925
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	831, 1085
HpaII	CCGG	2 cut(s)	614, 669
HphI	GGTGA	3 cut(s)	109, 644, 1070
Hpy166II	GTNNAC	4 cut(s)	6, 607, 682, 1004
Hpy188I	TCNGA	9 cut(s)	289, 370, 439, 475, 564, 931, 1027, 1084, 1139
Hpy188III	TCNNGA	3 cut(s)	551, 810, 819
Hpy8I	GTNNAC	4 cut(s)	6, 607, 682, 1004
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	4 cut(s)	19, 266, 326, 755
HpyCH4III	ACNGT	4 cut(s)	463, 598, 946, 952
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	6 cut(s)	81, 710, 860, 1037, 1094, 1103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	282, 554, 857, 866, 875, 910, 1100
HpyF3I	CTNAG	8 cut(s)	100, 144, 176, 250, 438, 474, 654, 1018
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	46, 925
Kzo9I	GATC	3 cut(s)	702, 815, 1079
LguI	GCTCTTC	2 cut(s)	73, 339
LmnI	GCTCC	1 cut(s)	504
Lsp1109I	GCAGC	3 cut(s)	838, 853, 980
LweI	GCATC	3 cut(s)	742, 1031, 1090
MaeI	CTAG	2 cut(s)	939, 978
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	8 cut(s)	377, 463, 493, 523, 835, 871, 946, 952
MalI	GATC	3 cut(s)	704, 817, 1081
MboI	GATC	3 cut(s)	702, 815, 1079
MflI	RGATCY	2 cut(s)	702, 815
MhlI	GDGCHC	1 cut(s)	809
MluCI	AATT	5 cut(s)	34, 314, 642, 908, 1115
MmeI	TCCRAC	1 cut(s)	117
MseI	TTAA	2 cut(s)	168, 747
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	1056
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	2 cut(s)	614, 669
MspR9I	CCNGG	4 cut(s)	614, 740, 771, 1077
MvaI	CCWGG	3 cut(s)	740, 771, 1077
MwoI	GCNNNNNNNGC	7 cut(s)	282, 554, 857, 866, 875, 910, 1100
NciI	CCSGG	1 cut(s)	614
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	3 cut(s)	702, 815, 1079
NlaIII	CATG	2 cut(s)	46, 925
NlaIV	GGNNCC	5 cut(s)	303, 651, 716, 728, 784
NmuCI	GTSAC	4 cut(s)	377, 463, 835, 871
PasI	CCCWGGG	1 cut(s)	739
PciSI	GCTCTTC	2 cut(s)	73, 339
PfeI	GAWTC	2 cut(s)	831, 1085
PfoI	TCCNGGA	1 cut(s)	612
PkrI	GCNGC	4 cut(s)	236, 853, 868, 970
Ppu21I	YACGTR	1 cut(s)	397
PpuMI	RGGWCCY	2 cut(s)	301, 650
Psp5II	RGGWCCY	2 cut(s)	301, 650
Psp6I	CCWGG	3 cut(s)	738, 769, 1075
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	3 cut(s)	738, 769, 1075
PspN4I	GGNNCC	5 cut(s)	303, 651, 716, 728, 784
PspPI	GGNCC	3 cut(s)	301, 650, 727
PspPPI	RGGWCCY	2 cut(s)	301, 650
PstI	CTGCAG	2 cut(s)	1039, 1096
PstNI	CAGNNNCTG	3 cut(s)	368, 866, 1025
PsuI	RGATCY	2 cut(s)	702, 815
RsaI	GTAC	3 cut(s)	460, 683, 982
RsaNI	GTAC	3 cut(s)	459, 682, 981
RseI	CAYNNNNRTG	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	2 cut(s)	73, 339
SaqAI	TTAA	2 cut(s)	168, 747
SatI	GCNGC	4 cut(s)	235, 852, 867, 969
Sau3AI	GATC	3 cut(s)	702, 815, 1079
Sau96I	GGNCC	3 cut(s)	301, 650, 727
ScrFI	CCNGG	4 cut(s)	614, 740, 771, 1077
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	3 cut(s)	742, 1031, 1090
SfcI	CTRYAG	3 cut(s)	1035, 1047, 1092
SinI	GGWCC	2 cut(s)	301, 650
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	3 cut(s)	549, 579, 746
SmoI	CTYRAG	3 cut(s)	549, 579, 746
SpeI	ACTAGT	1 cut(s)	977
Sse9I	AATT	5 cut(s)	34, 314, 642, 908, 1115
SsiI	CCGC	7 cut(s)	232, 235, 246, 455, 588, 904, 1056
SspMI	CTAG	2 cut(s)	939, 978
StyD4I	CCNGG	4 cut(s)	612, 738, 769, 1075
StyI	CCWWGG	3 cut(s)	42, 718, 786
TaaI	ACNGT	4 cut(s)	463, 598, 946, 952
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	5, 261, 267, 570
TasI	AATT	5 cut(s)	34, 314, 642, 908, 1115
TatI	WGTACW	2 cut(s)	681, 980
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	831, 1085
Tru1I	TTAA	2 cut(s)	168, 747
Tru9I	TTAA	2 cut(s)	168, 747
TscAI	CASTG	5 cut(s)	61, 853, 1006, 1117, 1132
TseFI	GTSAC	4 cut(s)	377, 463, 835, 871
TseI	GCWGC	3 cut(s)	851, 866, 968
Tsp45I	GTSAC	4 cut(s)	377, 463, 835, 871
TspDTI	ATGAA	2 cut(s)	294, 896
TspGWI	ACGGA	2 cut(s)	387, 900
TspRI	CASTG	5 cut(s)	61, 853, 1006, 1117, 1132
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	2 cut(s)	301, 650
XapI	RAATTY	1 cut(s)	642
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	939, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.