Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Reverse (-)

3546204 .. 3547754

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTCCCACACGTGGGCATTCGTCTTGGTCAAATGGGAAGCCCCTTCGTCCCGTCTTCTGCCACTCGAAGACCTTCCATCCCCAAACACCATTTCCTCCCACACAATGCTATCCATGGCTTCCACTAGCACTTCTTGTTCTTCTCCCCTCTGCAACAAAATCTCCAACTTCTCAATCTCCCACTCACTCACTCCAATTCCCACCCACTTCCCACCACACATTAAACTCCTAAAACCCCTCAAGCTCAAAGCCTGTTTCCACAGCTTCCCTCACCTCTCTCCTTCCCCCAGTTTCCGCCGCTCGTTGGCGGCGTTCGACGGCTTCGAAGTCGAAGAAGATAGTGAAAGCCAAGGCGAACTAGACCCAGAAGCAGAGCTCCATGAAAAGCAAGAAGAAGAAGAAGAAAGAGAGGAAGTGCCAAAGATATCAGACGCCGGGAGGCTGTATGTGGGGAATTTGCCTTATAATTTGACTTCGACCCAATTGGCTGAGGTTTTCGGGGAGGCTGGCACGGTGGTTTTCTCAGAGATTATTTATAACAGGGTCACAGATAGAAGCCGGGGATTCGGATTTGTCACAATGTCAACTGTTGAGGAAGCTCAGGATGCCATTAGGATGTTTGATGGCTCTCAAGTAGGAGGTAGAACTGTGAAGGTGAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGGAAATTTTAGGACCCAATAGCACAAGGACAGGGTTCAAGGTGTACATAGATAGTCCACACAAGGTTTATGCAGGAAACCTTAGCTGGGGTTTAACTTCACAGGGTCTCAAAGATGCCTTTGAAGAGCAGCCAGGGCTGTTGGGTGCCAAGGTCATATATGAGAGGGTTTCTGGACGATCCAGAGGTTTCGGGTTTGTGACATTCGAAACTAATGAGGCTGCGGAATCTGCTATCGCTGCCATGAATGGAGTGGAGGTTGATGGGCGGCCTTTGCGATTAAACATGGCGGCAGAAAGAGCAAGGCCTGTTGCTTCCTCTCCGGCAGCATCAGAAACAACTGCACAAGACACAGACAGCAGTGAATTGGTCTCTCCTCCCGCATCGGAAACAACCACAGAAGACGGAGACAGTGGCGAATTGGTTTCCAGCGTTAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

377

Amino Acids

40.86

Weight (kDa)

4.91

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	465, 537
AccB1I	GGYRCC	1 cut(s)	833
AccBSI	CCGCTC	1 cut(s)	300
AciI	CCGC	7 cut(s)	295, 298, 308, 911, 955, 977, 1068
AclWI	GGATC	1 cut(s)	861
AcsI	RAATTY	2 cut(s)	454, 693
AcvI	CACGTG	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	1 cut(s)	734
AfiI	CCNNNNNNNGG	5 cut(s)	12, 13, 304, 680, 775
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	727, 812
AjnI	CCWGG	1 cut(s)	820
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	5 cut(s)	244, 264, 376, 599, 774
AluI	AGCT	5 cut(s)	244, 264, 376, 599, 774
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	3 cut(s)	800, 1063, 1089
AlwI	GGATC	1 cut(s)	861
AoxI	GGCC	2 cut(s)	956, 992
ApeKI	GCWGC	4 cut(s)	817, 908, 926, 1013
ApoI	RAATTY	2 cut(s)	454, 693
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	701
AsuC2I	CCSGG	2 cut(s)	436, 560
AsuHPI	GGTGA	3 cut(s)	263, 667, 695
AsuII	TTCGAA	2 cut(s)	324, 894
AvaII	GGWCC	1 cut(s)	701
BanI	GGYRCC	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	378
BbrPI	CACGTG	1 cut(s)	12
BbsI	GAAGAC	3 cut(s)	47, 75, 1095
Bbv12I	GWGCWC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	829, 895, 913, 1025
BccI	CCATC	3 cut(s)	85, 617, 944
BceAI	ACGGC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	822
BcnI	CCSGG	2 cut(s)	436, 560
BcoDI	GTCTC	3 cut(s)	800, 1063, 1089
BfaI	CTAG	2 cut(s)	126, 359
BisI	GCNGC	8 cut(s)	298, 309, 818, 909, 927, 956, 978, 1014
BlsI	GCNGC	8 cut(s)	299, 310, 819, 910, 928, 957, 979, 1015
Bme1390I	CCNGG	3 cut(s)	436, 560, 822
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	2 cut(s)	703, 835
BmrFI	CCNGG	3 cut(s)	436, 560, 822
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	4 cut(s)	595, 793, 1025, 1079
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	3 cut(s)	47, 75, 1095
Bpu10I	CCTNAGC	3 cut(s)	489, 600, 770
Bpu14I	TTCGAA	2 cut(s)	324, 894
BpuEI	CTTGAG	2 cut(s)	224, 615
BpuMI	CCSGG	2 cut(s)	436, 560
BsaAI	YACGTR	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	432
BsaI	GGTCTC	2 cut(s)	800, 1063
BsaJI	CCNNGG	5 cut(s)	114, 349, 559, 821, 837
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 930, 960
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 13, 304, 680, 775
Bse1I	ACTGG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	822
BseDI	CCNNGG	5 cut(s)	114, 349, 559, 821, 837
BseGI	GGATG	3 cut(s)	77, 610, 621
BseLI	CCNNNNNNNGG	5 cut(s)	12, 13, 304, 680, 775
BseMII	CTCAG	3 cut(s)	480, 537, 614
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	693, 1053
BseXI	GCAGC	4 cut(s)	829, 895, 913, 1025
BseYI	CCCAGC	1 cut(s)	774
BsgI	GTGCAG	1 cut(s)	1014
BshFI	GGCC	2 cut(s)	958, 994
BshNI	GGYRCC	1 cut(s)	833
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	3 cut(s)	435, 559, 1010
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	5 cut(s)	12, 13, 304, 680, 775
BsmAI	GTCTC	3 cut(s)	800, 1063, 1089
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	958, 994
Bso31I	GGTCTC	2 cut(s)	800, 1063
Bsp119I	TTCGAA	2 cut(s)	324, 894
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	1 cut(s)	866
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	7 cut(s)	295, 298, 308, 911, 955, 977, 1068
BspANI	GGCC	2 cut(s)	958, 994
BspCNI	CTCAG	3 cut(s)	481, 536, 613
BspLI	GGNNCC	2 cut(s)	703, 835
BspPI	GGATC	1 cut(s)	861
BspQI	GCTCTTC	1 cut(s)	807
BspT104I	TTCGAA	2 cut(s)	324, 894
BspT107I	GGYRCC	1 cut(s)	833
BspTNI	GGTCTC	2 cut(s)	800, 1063
BsrBI	CCGCTC	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	5 cut(s)	114, 349, 559, 821, 837
BssMI	GATC	1 cut(s)	866
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	3 cut(s)	114, 349, 837
Bst2UI	CCWGG	1 cut(s)	822
Bst4CI	ACNGT	4 cut(s)	514, 589, 649, 1100
Bst6I	CTCTTC	1 cut(s)	807
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	12
BstBI	TTCGAA	2 cut(s)	324, 894
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	4 cut(s)	489, 523, 600, 770
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	77, 610, 621
BstKTI	GATC	1 cut(s)	869
BstMAI	GTCTC	3 cut(s)	800, 1063, 1089
BstMBI	GATC	1 cut(s)	866
BstMWI	GCNNNNNNNGC	6 cut(s)	605, 823, 917, 926, 961, 986
BstNI	CCWGG	1 cut(s)	822
BstSCI	CCNGG	3 cut(s)	434, 558, 820
BstV1I	GCAGC	4 cut(s)	829, 895, 913, 1025
BstV2I	GAAGAC	3 cut(s)	47, 75, 1095
BsuRI	GGCC	2 cut(s)	958, 994
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	77, 610, 621
BtsI	GCAGTG	1 cut(s)	1054
BtsIMutI	CAGTG	2 cut(s)	1054, 1105
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	701
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	733
CviAII	CATG	4 cut(s)	115, 380, 931, 973
CviQI	GTAC	1 cut(s)	733
DdeI	CTNAG	4 cut(s)	489, 523, 600, 770
DpnI	GATC	1 cut(s)	868
DpnII	GATC	1 cut(s)	866
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
EciI	GGCGGA	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	3 cut(s)	114, 349, 837
Eco147I	AGGCCT	1 cut(s)	994
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	2 cut(s)	800, 1063
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	701
Eco53kI	GAGCTC	1 cut(s)	376
Eco72I	CACGTG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	820
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	3 cut(s)	114, 349, 837
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	3 cut(s)	114, 349, 837
FaeI	CATG	4 cut(s)	118, 383, 934, 976
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	4 cut(s)	114, 379, 930, 972
FauI	CCCGC	1 cut(s)	1075
Fnu4HI	GCNGC	8 cut(s)	298, 309, 818, 909, 927, 956, 978, 1014
FokI	GGATG	3 cut(s)	64, 617, 628
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	8 cut(s)	298, 309, 818, 909, 927, 956, 978, 1014
FspBI	CTAG	2 cut(s)	126, 359
GluI	GCNGC	8 cut(s)	298, 309, 818, 909, 927, 956, 978, 1014
GsaI	CCCAGC	1 cut(s)	778
HaeIII	GGCC	2 cut(s)	958, 994
HapII	CCGG	3 cut(s)	435, 559, 1010
HgaI	GACGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	118, 383, 934, 976
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	2 cut(s)	564, 914
HpaII	CCGG	3 cut(s)	435, 559, 1010
HphI	GGTGA	3 cut(s)	263, 667, 695
Hpy166II	GTNNAC	4 cut(s)	585, 658, 733, 746
Hpy188I	TCNGA	6 cut(s)	430, 526, 569, 1021, 1075, 1130
Hpy188III	TCNNGA	3 cut(s)	602, 861, 870
Hpy8I	GTNNAC	4 cut(s)	585, 658, 733, 746
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	54, 83, 291, 646
HpyCH4III	ACNGT	4 cut(s)	514, 589, 649, 1100
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	153, 761, 1031
HpyF10VI	GCNNNNNNNGC	6 cut(s)	605, 823, 917, 926, 961, 986
HpyF3I	CTNAG	4 cut(s)	489, 523, 600, 770
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	4 cut(s)	118, 383, 934, 976
Kzo9I	GATC	1 cut(s)	866
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	1 cut(s)	381
Lsp1109I	GCAGC	4 cut(s)	829, 895, 913, 1025
LweI	GCATC	4 cut(s)	595, 793, 1025, 1079
MaeI	CTAG	2 cut(s)	126, 359
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	3 cut(s)	544, 574, 886
MalI	GATC	1 cut(s)	868
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	1 cut(s)	866
MfeI	CAATTG	1 cut(s)	482
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	7 cut(s)	195, 454, 466, 482, 693, 1052, 1106
MmeI	TCCRAC	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	3 cut(s)	222, 782, 968
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	3 cut(s)	435, 559, 1010
MspR9I	CCNGG	3 cut(s)	436, 560, 822
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	822
MwoI	GCNNNNNNNGC	6 cut(s)	605, 823, 917, 926, 961, 986
NciI	CCSGG	2 cut(s)	436, 560
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	866
NlaIII	CATG	4 cut(s)	118, 383, 934, 976
NlaIV	GGNNCC	2 cut(s)	703, 835
NmuCI	GTSAC	3 cut(s)	544, 574, 886
NspV	TTCGAA	2 cut(s)	324, 894
PceI	AGGCCT	1 cut(s)	994
PciSI	GCTCTTC	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	2 cut(s)	308, 321
PctI	GAATGC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	564, 914
PkrI	GCNGC	8 cut(s)	299, 310, 819, 910, 928, 957, 979, 1015
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	701
PsiI	TTATAA	2 cut(s)	465, 537
Psp124BI	GAGCTC	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	820
PspCI	CACGTG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	820
PspN4I	GGNNCC	2 cut(s)	703, 835
PspPI	GGNCC	1 cut(s)	701
PspPPI	RGGWCCY	1 cut(s)	701
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	3 cut(s)	222, 782, 968
SatI	GCNGC	8 cut(s)	298, 309, 818, 909, 927, 956, 978, 1014
Sau3AI	GATC	1 cut(s)	866
Sau96I	GGNCC	1 cut(s)	701
ScrFI	CCNGG	3 cut(s)	436, 560, 822
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	4 cut(s)	595, 793, 1025, 1079
SfuI	TTCGAA	2 cut(s)	324, 894
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	239, 630
SmoI	CTYRAG	2 cut(s)	239, 630
Sse9I	AATT	7 cut(s)	195, 454, 466, 482, 693, 1052, 1106
SseBI	AGGCCT	1 cut(s)	994
SsiI	CCGC	7 cut(s)	295, 298, 308, 911, 955, 977, 1068
SspMI	CTAG	2 cut(s)	126, 359
SstI	GAGCTC	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	994
StyD4I	CCNGG	3 cut(s)	434, 558, 820
StyI	CCWWGG	3 cut(s)	114, 349, 837
TaaI	ACNGT	4 cut(s)	514, 589, 649, 1100
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	6 cut(s)	66, 315, 324, 330, 476, 894
TasI	AATT	7 cut(s)	195, 454, 466, 482, 693, 1052, 1106
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	4 cut(s)	300, 311, 958, 980
TfiI	GAWTC	2 cut(s)	564, 914
Tru1I	TTAA	3 cut(s)	222, 782, 968
Tru9I	TTAA	3 cut(s)	222, 782, 968
TscAI	CASTG	2 cut(s)	1054, 1105
TseFI	GTSAC	3 cut(s)	544, 574, 886
TseI	GCWGC	4 cut(s)	817, 908, 926, 1013
Tsp45I	GTSAC	3 cut(s)	544, 574, 886
TspDTI	ATGAA	2 cut(s)	396, 947
TspGWI	ACGGA	1 cut(s)	1107
TspRI	CASTG	2 cut(s)	1054, 1105
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	2 cut(s)	454, 693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	2 cut(s)	126, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.