Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Forward (+)

27759241 .. 27761197

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCGAAGCTCAACCTTCTTCCCCAAAAACATTTCTTTACCAATTCCTCTAGTAATGTCGACCTCTTCTCTAGCAATGGCTTCCACAAGTACTACTTGCTCTTCTCCACTTTGCAACAAAATCTCTAACTTCTCACTCACCCCAATCCCCACCCACTTACAACCTCAATTTAAACCCCCTAAACCCCTTAAACCCCTGAAGCTGAAAGCCCATTTCTCCTACTTCTCTCGTCTCTCTTCTCTCCACCATTTCCGCCGCCCCTTTTCGGCCTTAGACGGCCTCGAAGTCGAAGAAGGCAATGAAAGCTCGGAGGAAGGAGGAGGAGAAGAAGAAAAGGACCCACAAGCAGAATTGCTTGAAGAAGAAGACGAAGTAGAAGAAGAAAAAGAAGAGCCAAAGGAAGCAGGGTCTGACAGAAGTGACGCTGGGAGGCTCTATGTGGGGAACTTGCCTTATTCTATGACTTCTACCCAGTTGTCTGAGATTTTCGGCGAGGCGGGTACTGTCACTTATTCAGAGATTATTTATGATAGAGTTACTGATAGGAGCAGGGGATTTGGGTTTGTTACAATGTCGAACGTTGAGGAAGCTCAAGAGGCCATTCGGATGTTCGATGGCTCTCAAGTAGGCGGCCGAACTGTCAGGGTAAACTTCCCAGAAGTGCCGAGAGGGGGTGAAAGGGAAATTTTGGGACCCAAGATAAGGAATCCTGGCTACAAGGTCTACATAGATAGCCCTAATAAGATCTATGCAGGAAACCTTGGTTGGGGCCTGACTTCCCAGGGTCTTAAAGATGCCTTTGAAGGCCAGCCAGGGCTGTTGGGTGCCAAGGTCATTTATGAGAGGGGTTCAGGAAGATCTCGAGGTTTTGGATTCGTCACTTTCGACACTGCTGCCGCTGCAGAAGCTGCTGTGATTGCCATGAATGGAGTGGAGGTTGATGGGCGGGCTTTGCGACTAAACATGGCTTCAGAAAGAGCTAGGACTGTAACTGTTACTCCACCTCCAGCATCGGAAACTAGTACAGAAAACACAGGGGCCAGTGAATTGGCTTCTCCCTCAGCATCTGAAACTACTGCAGAAGACACTACAGACAGTGGTGAAGTGGTTTCTTCCCCAGCATCAGAAACAACCGCAGAAGATGCAGACAGCAGTGAATTGATTTCCAGCGTTAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

393

Amino Acids

42.28

Weight (kDa)

4.71

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	145 - 215	4e-20	RNA recognition motif
RRM_1	PF00076	249 - 319	7.4e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	824
AccI	GTMKAC	2 cut(s)	59, 723
AciI	CCGC	7 cut(s)	253, 256, 497, 630, 897, 946, 1134
AclI	AACGTT	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	684
AcuI	CTGAAG	2 cut(s)	218, 954
AfaI	GTAC	3 cut(s)	91, 502, 1024
AfiI	CCNNNNNNNGG	4 cut(s)	265, 671, 702, 766
AgsI	TTSAA	2 cut(s)	359, 803
AhlI	ACTAGT	1 cut(s)	1019
AjnI	CCWGG	3 cut(s)	709, 780, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	748, 780
AluBI	AGCT	6 cut(s)	9, 202, 306, 590, 908, 980
AluI	AGCT	6 cut(s)	9, 202, 306, 590, 908, 980
Alw26I	GTCTC	1 cut(s)	236
AlwNI	CAGNNNCTG	3 cut(s)	410, 908, 1067
Ama87I	CYCGRG	1 cut(s)	861
AoxI	GGCC	7 cut(s)	267, 277, 597, 631, 769, 805, 1038
ApeKI	GCWGC	3 cut(s)	893, 899, 908
ApoI	RAATTY	1 cut(s)	684
AspS9I	GGNCC	4 cut(s)	337, 692, 769, 1038
AsuHPI	GGTGA	3 cut(s)	130, 686, 1112
AvaI	CYCGRG	1 cut(s)	861
AvaII	GGWCC	2 cut(s)	337, 692
BanI	GGYRCC	1 cut(s)	824
BbsI	GAAGAC	2 cut(s)	372, 1089
BbvCI	CCTCAGC	1 cut(s)	1060
BbvI	GCAGC	3 cut(s)	880, 886, 895
BccI	CCATC	2 cut(s)	608, 935
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	3 cut(s)	711, 782, 813
BcoDI	GTCTC	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	1019
BfaI	CTAG	4 cut(s)	50, 71, 981, 1020
BfmI	CTRYAG	3 cut(s)	900, 1077, 1089
BglII	AGATCT	2 cut(s)	744, 857
BisI	GCNGC	6 cut(s)	256, 631, 894, 897, 900, 909
BlsI	GCNGC	6 cut(s)	257, 632, 895, 898, 901, 910
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	3 cut(s)	711, 782, 813
Bme18I	GGWCC	2 cut(s)	337, 692
BmeT110I	CYCGRG	1 cut(s)	861
BmgT120I	GGNCC	4 cut(s)	337, 692, 769, 1038
BmiI	GGNNCC	6 cut(s)	339, 693, 694, 770, 826, 1039
BmrFI	CCNGG	3 cut(s)	711, 782, 813
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	5 cut(s)	784, 1019, 1073, 1130, 1132
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	372, 1089
BpmI	CTGGAG	1 cut(s)	990
Bpu10I	CCTNAGC	1 cut(s)	1060
BpuEI	CTTGAG	2 cut(s)	576, 606
BsaJI	CCNNGG	5 cut(s)	760, 780, 781, 812, 828
BsaXI	ACNNNNNCTCC	6 cut(s)	921, 951, 982, 988, 1012, 1018
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 671, 702, 766
Bse1I	ACTGG	2 cut(s)	472, 1041
Bse3DI	GCAATG	2 cut(s)	81, 304
BseBI	CCWGG	3 cut(s)	711, 782, 813
BseDI	CCNNGG	5 cut(s)	760, 780, 781, 812, 828
BseGI	GGATG	1 cut(s)	612
BseLI	CCNNNNNNNGG	4 cut(s)	265, 671, 702, 766
BseMI	GCAATG	2 cut(s)	81, 304
BseMII	CTCAG	2 cut(s)	471, 1074
BseNI	ACTGG	2 cut(s)	472, 1041
BseRI	GAGGAG	2 cut(s)	333, 336
BseX3I	CGGCCG	1 cut(s)	631
BseXI	GCAGC	3 cut(s)	880, 886, 895
BseYI	CCCAGC	2 cut(s)	425, 1117
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	7 cut(s)	269, 279, 599, 633, 771, 807, 1040
BshNI	GGYRCC	1 cut(s)	824
BsiEI	CGRYCG	1 cut(s)	634
BsiHKCI	CYCGRG	1 cut(s)	861
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	4 cut(s)	265, 671, 702, 766
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	7 cut(s)	269, 279, 599, 633, 771, 807, 1040
BsoBI	CYCGRG	1 cut(s)	861
Bsp143I	GATC	2 cut(s)	744, 857
BspACI	CCGC	7 cut(s)	253, 256, 497, 630, 897, 946, 1134
BspANI	GGCC	7 cut(s)	269, 279, 599, 633, 771, 807, 1040
BspCNI	CTCAG	2 cut(s)	472, 1073
BspLI	GGNNCC	6 cut(s)	339, 693, 694, 770, 826, 1039
BspMAI	CTGCAG	2 cut(s)	904, 1081
BspQI	GCTCTTC	2 cut(s)	106, 384
BspT107I	GGYRCC	1 cut(s)	824
BsrDI	GCAATG	2 cut(s)	81, 304
BsrI	ACTGG	2 cut(s)	472, 1041
BssECI	CCNNGG	5 cut(s)	760, 780, 781, 812, 828
BssMI	GATC	2 cut(s)	744, 857
BssT1I	CCWWGG	2 cut(s)	760, 828
Bst2UI	CCWGG	3 cut(s)	711, 782, 813
Bst4CI	ACNGT	5 cut(s)	505, 640, 988, 994, 1097
Bst6I	CTCTTC	4 cut(s)	70, 106, 241, 384
BstAPI	GCANNNNNTGC	2 cut(s)	908, 1142
BstC8I	GCNNGC	2 cut(s)	809, 948
BstDEI	CTNAG	3 cut(s)	271, 480, 1060
BstF5I	GGATG	1 cut(s)	612
BstKTI	GATC	2 cut(s)	747, 860
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	744, 857
BstMCI	CGRYCG	1 cut(s)	634
BstMWI	GCNNNNNNNGC	8 cut(s)	303, 596, 899, 905, 908, 917, 952, 1142
BstNI	CCWGG	3 cut(s)	711, 782, 813
BstSCI	CCNGG	3 cut(s)	709, 780, 811
BstSFI	CTRYAG	3 cut(s)	900, 1077, 1089
BstV1I	GCAGC	3 cut(s)	880, 886, 895
BstV2I	GAAGAC	2 cut(s)	372, 1089
BstX2I	RGATCY	2 cut(s)	744, 857
BstXI	CCANNNNNNTGG	1 cut(s)	1048
BstYI	RGATCY	2 cut(s)	744, 857
BstZI	CGGCCG	1 cut(s)	631
BsuRI	GGCC	7 cut(s)	269, 279, 599, 633, 771, 807, 1040
BtsCI	GGATG	1 cut(s)	612
BtsI	GCAGTG	2 cut(s)	888, 1159
BtsIMutI	CAGTG	4 cut(s)	888, 1048, 1102, 1159
Cac8I	GCNNGC	2 cut(s)	809, 948
CaiI	CAGNNNCTG	3 cut(s)	410, 908, 1067
Cfr13I	GGNCC	4 cut(s)	337, 692, 769, 1038
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	90, 501, 1023
CviAII	CATG	2 cut(s)	922, 964
CviQI	GTAC	3 cut(s)	90, 501, 1023
DdeI	CTNAG	3 cut(s)	271, 480, 1060
DpnI	GATC	2 cut(s)	746, 859
DpnII	GATC	2 cut(s)	744, 857
DraI	TTTAAA	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	631
EagI	CGGCCG	1 cut(s)	631
Eam1104I	CTCTTC	4 cut(s)	70, 106, 241, 384
EarI	CTCTTC	4 cut(s)	70, 106, 241, 384
EciI	GGCGGA	1 cut(s)	242
EclXI	CGGCCG	1 cut(s)	631
Eco130I	CCWWGG	2 cut(s)	760, 828
Eco47I	GGWCC	2 cut(s)	337, 692
Eco52I	CGGCCG	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	218, 954
Eco88I	CYCGRG	1 cut(s)	861
EcoO109I	RGGNCCY	3 cut(s)	337, 692, 769
EcoRII	CCWGG	3 cut(s)	709, 780, 811
EcoT14I	CCWWGG	2 cut(s)	760, 828
ErhI	CCWWGG	2 cut(s)	760, 828
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	2 cut(s)	925, 967
FaiI	YATR	8 cut(s)	438, 461, 528, 728, 750, 840, 923, 965
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	2 cut(s)	921, 963
FauI	CCCGC	2 cut(s)	490, 939
FblI	GTMKAC	2 cut(s)	59, 723
Fnu4HI	GCNGC	6 cut(s)	256, 631, 894, 897, 900, 909
FokI	GGATG	1 cut(s)	619
Fsp4HI	GCNGC	6 cut(s)	256, 631, 894, 897, 900, 909
FspBI	CTAG	4 cut(s)	50, 71, 981, 1020
GluI	GCNGC	6 cut(s)	256, 631, 894, 897, 900, 909
GsaI	CCCAGC	2 cut(s)	429, 1121
GsuI	CTGGAG	1 cut(s)	990
HaeIII	GGCC	7 cut(s)	269, 279, 599, 633, 771, 807, 1040
HgaI	GACGC	1 cut(s)	431
Hin1II	CATG	2 cut(s)	925, 967
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	2 cut(s)	706, 873
HphI	GGTGA	3 cut(s)	130, 686, 1112
Hpy166II	GTNNAC	3 cut(s)	60, 649, 724
Hpy188III	TCNNGA	3 cut(s)	593, 852, 861
Hpy8I	GTNNAC	3 cut(s)	60, 649, 724
HpyAV	CCTTC	4 cut(s)	25, 287, 308, 797
HpyCH4III	ACNGT	5 cut(s)	505, 640, 988, 994, 1097
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	5 cut(s)	114, 752, 902, 1079, 1145
HpyF10VI	GCNNNNNNNGC	8 cut(s)	303, 596, 899, 905, 908, 917, 952, 1142
HpyF3I	CTNAG	3 cut(s)	271, 480, 1060
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	925, 967
KflI	GGGWCCC	1 cut(s)	692
Kzo9I	GATC	2 cut(s)	744, 857
LguI	GCTCTTC	2 cut(s)	106, 384
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	3 cut(s)	880, 886, 895
LweI	GCATC	5 cut(s)	784, 1019, 1073, 1130, 1132
MaeI	CTAG	4 cut(s)	50, 71, 981, 1020
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	7 cut(s)	419, 505, 535, 565, 877, 988, 994
MalI	GATC	2 cut(s)	746, 859
MboI	GATC	2 cut(s)	744, 857
MflI	RGATCY	2 cut(s)	744, 857
MluCI	AATT	6 cut(s)	42, 167, 350, 684, 1046, 1157
MseI	TTAA	3 cut(s)	171, 189, 789
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	899
MspR9I	CCNGG	3 cut(s)	711, 782, 813
MvaI	CCWGG	3 cut(s)	711, 782, 813
MwoI	GCNNNNNNNGC	8 cut(s)	303, 596, 899, 905, 908, 917, 952, 1142
NdeII	GATC	2 cut(s)	744, 857
NlaIII	CATG	2 cut(s)	925, 967
NlaIV	GGNNCC	6 cut(s)	339, 693, 694, 770, 826, 1039
NmeAIII	GCCGAG	1 cut(s)	690
NmuCI	GTSAC	3 cut(s)	419, 505, 877
PaeR7I	CTCGAG	1 cut(s)	861
PasI	CCCWGGG	1 cut(s)	781
PciSI	GCTCTTC	2 cut(s)	106, 384
PcsI	WCGNNNNNNNCGW	1 cut(s)	882
PfeI	GAWTC	2 cut(s)	706, 873
PkrI	GCNGC	6 cut(s)	257, 632, 895, 898, 901, 910
PpuMI	RGGWCCY	2 cut(s)	337, 692
Psp1406I	AACGTT	1 cut(s)	579
Psp5II	RGGWCCY	2 cut(s)	337, 692
Psp6I	CCWGG	3 cut(s)	709, 780, 811
PspFI	CCCAGC	2 cut(s)	425, 1117
PspGI	CCWGG	3 cut(s)	709, 780, 811
PspN4I	GGNNCC	6 cut(s)	339, 693, 694, 770, 826, 1039
PspPI	GGNCC	4 cut(s)	337, 692, 769, 1038
PspPPI	RGGWCCY	2 cut(s)	337, 692
PstI	CTGCAG	2 cut(s)	904, 1081
PstNI	CAGNNNCTG	3 cut(s)	410, 908, 1067
PsuI	RGATCY	2 cut(s)	744, 857
RsaI	GTAC	3 cut(s)	91, 502, 1024
RsaNI	GTAC	3 cut(s)	90, 501, 1023
RseI	CAYNNNNRTG	1 cut(s)	605
SalI	GTCGAC	1 cut(s)	58
SapI	GCTCTTC	2 cut(s)	106, 384
SaqAI	TTAA	3 cut(s)	171, 189, 789
SatI	GCNGC	6 cut(s)	256, 631, 894, 897, 900, 909
Sau3AI	GATC	2 cut(s)	744, 857
Sau96I	GGNCC	4 cut(s)	337, 692, 769, 1038
ScaI	AGTACT	1 cut(s)	91
ScrFI	CCNGG	3 cut(s)	711, 782, 813
SfaNI	GCATC	5 cut(s)	784, 1019, 1073, 1130, 1132
SfcI	CTRYAG	3 cut(s)	900, 1077, 1089
Sfr274I	CTCGAG	1 cut(s)	861
SinI	GGWCC	2 cut(s)	337, 692
SlaI	CTCGAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	3 cut(s)	591, 621, 861
SmoI	CTYRAG	3 cut(s)	591, 621, 861
SpeI	ACTAGT	1 cut(s)	1019
Sse9I	AATT	6 cut(s)	42, 167, 350, 684, 1046, 1157
SsiI	CCGC	7 cut(s)	253, 256, 497, 630, 897, 946, 1134
SspMI	CTAG	4 cut(s)	50, 71, 981, 1020
StyD4I	CCNGG	3 cut(s)	709, 780, 811
StyI	CCWWGG	2 cut(s)	760, 828
TaaI	ACNGT	5 cut(s)	505, 640, 988, 994, 1097
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	7 cut(s)	59, 282, 288, 575, 612, 862, 885
TasI	AATT	6 cut(s)	42, 167, 350, 684, 1046, 1157
TatI	WGTACW	2 cut(s)	89, 1022
TauI	GCSGC	3 cut(s)	258, 633, 899
TfiI	GAWTC	2 cut(s)	706, 873
Tru1I	TTAA	3 cut(s)	171, 189, 789
Tru9I	TTAA	3 cut(s)	171, 189, 789
TscAI	CASTG	4 cut(s)	895, 1048, 1102, 1159
TseFI	GTSAC	3 cut(s)	419, 505, 877
TseI	GCWGC	3 cut(s)	893, 899, 908
Tsp45I	GTSAC	3 cut(s)	419, 505, 877
TspDTI	ATGAA	2 cut(s)	315, 938
TspRI	CASTG	4 cut(s)	895, 1048, 1102, 1159
VpaK11BI	GGWCC	2 cut(s)	337, 692
XapI	RAATTY	1 cut(s)	684
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XhoI	CTCGAG	1 cut(s)	861
XmiI	GTMKAC	2 cut(s)	59, 723
XspI	CTAG	4 cut(s)	50, 71, 981, 1020
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.