Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Reverse (-)

4645059 .. 4648667

Gene Structure 3609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1042000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAAATCCAAAAATCCAGAAAGCTTATCCATGTCCCACACGTGGGCATTCGTCTTAGTCAAATGGGAAGCCCCTCGTCCCGTCTTCTGCCACTCGAAGACCTTCCATCCCCAAACACCATTTCCTCCCACACAATGCTATCCATGGCTTCCACAAGCACTTCTTGTTCTTCTCCCCTCTGCAACAAAATCCCCAACTTCTCAATCTCCCGCTCACTCACTCCAATTCCCACCCACTTCCCACCACACATTAAACTCCTAAAACCCCTCGAGCTCAAAGCCTGTTTCCACAGCTTCCCTCACCTCTCTCCTTCCCCCAGTTTCCGCCGCTCGTTGGCGGCGTTTGACGGCTTCGAAGTCAAAGAAGATAGTGAAAGCCAAGCCGAACTAGACCCAGAAGCAGAGCTCCATGAAAAGCAAGAAGAAGAAGAAGAAAGAGAGGAAGTGCCAAAGAGCTCAGACGCCGGGAGGCTATATGTAGGGAATTTGCCTTATAATTTGACTTCGACCCAATTGGCTGAGGTTTTCGGGGAGGCTGGCACGGTGGTTTTCTCAGAGATTATTTATAACAGGGTCACAGATAGAAGCCGGGGATTCGGATTTGTCACAATGTCAACTGTTGAGGAAGCTCAGGATGCCATTAGGATGTTTGATGGCTCTCAAGTAGGAGGTAGAACTGTGAAGGTGAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGGAAATTTTAGGACCCAATAGCACAAGGACAGGGTTCAAGGTGTACATAGATAGTCCACACAAGGTTTATGCAGGAAACCTTAGCTGGGGTTTAACTTCACAGGGTCTTAAAGATGCCTTTGAAGAGCAGCCAGGGCTGTTGGGTGCCAAGGTCATATATGAGAGGGTTTCTGGACGATCCAGAGGTTTCGGGTTTGTGACATTCGAAACTAATGAGGCTGCGGAATCAGCTGTCGCTGCCATGAATGGAGTGGAGGTTGATGGGCGGCCTTTGCGATTAAACATGGCGGCAGAAAGAGCAAGGCATGTTGCTTCCTCTCCGGCAGCACCAGAAACAACTGCACAAGACACAGATAGTAGTGAATTGGTCTCGCCTCCTGCATCGGAAACAACCACAGAAGACGGAGACAGTGGCGAATTGGTTTCCAGCGTTAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

387

Amino Acids

41.96

Weight (kDa)

5.28

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	158 - 228	5e-18	RNA recognition motif
RRM_1	PF00076	262 - 332	1e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	495, 567
AccB1I	GGYRCC	1 cut(s)	863
AccBSI	CCGCTC	2 cut(s)	213, 330
AciI	CCGC	7 cut(s)	211, 325, 328, 338, 941, 985, 1007
AclWI	GGATC	1 cut(s)	891
AcsI	RAATTY	2 cut(s)	484, 723
AcvI	CACGTG	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	1 cut(s)	764
AfiI	CCNNNNNNNGG	5 cut(s)	43, 44, 334, 710, 805
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	757, 842
AjnI	CCWGG	1 cut(s)	850
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	8 cut(s)	25, 274, 294, 406, 456, 629, 804, 950
AluI	AGCT	8 cut(s)	25, 274, 294, 406, 456, 629, 804, 950
Alw21I	GWGCWC	3 cut(s)	276, 408, 458
Alw26I	GTCTC	2 cut(s)	1093, 1119
AlwI	GGATC	1 cut(s)	891
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	986
ApeKI	GCWGC	4 cut(s)	847, 938, 956, 1043
ApoI	RAATTY	2 cut(s)	484, 723
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	2 cut(s)	466, 590
AsuHPI	GGTGA	3 cut(s)	293, 697, 725
AsuII	TTCGAA	2 cut(s)	354, 924
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	731
BanI	GGYRCC	1 cut(s)	863
BanII	GRGCYC	3 cut(s)	276, 408, 458
BbrPI	CACGTG	1 cut(s)	43
BbsI	GAAGAC	3 cut(s)	77, 105, 1125
Bbv12I	GWGCWC	3 cut(s)	276, 408, 458
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	859, 925, 943, 1055
BccI	CCATC	3 cut(s)	115, 647, 974
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	852
BcnI	CCSGG	2 cut(s)	466, 590
BcoDI	GTCTC	2 cut(s)	1093, 1119
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	8 cut(s)	328, 339, 848, 939, 957, 986, 1008, 1044
BlsI	GCNGC	8 cut(s)	329, 340, 849, 940, 958, 987, 1009, 1045
Bme1390I	CCNGG	3 cut(s)	466, 590, 852
Bme18I	GGWCC	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	733, 865
BmrFI	CCNGG	3 cut(s)	466, 590, 852
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	625, 823, 1109
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	3 cut(s)	77, 105, 1125
Bpu10I	CCTNAGC	3 cut(s)	519, 630, 800
Bpu14I	TTCGAA	2 cut(s)	354, 924
BpuEI	CTTGAG	1 cut(s)	645
BpuMI	CCSGG	2 cut(s)	466, 590
BsaAI	YACGTR	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	1093
BsaJI	CCNNGG	4 cut(s)	144, 589, 851, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	960, 990
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 44, 334, 710, 805
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	4 cut(s)	144, 589, 851, 867
BseGI	GGATG	3 cut(s)	107, 640, 651
BseLI	CCNNNNNNNGG	5 cut(s)	43, 44, 334, 710, 805
BseMII	CTCAG	4 cut(s)	471, 510, 567, 644
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	4 cut(s)	859, 925, 943, 1055
BseYI	CCCAGC	1 cut(s)	804
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	1 cut(s)	988
BshNI	GGYRCC	1 cut(s)	863
BsiHKAI	GWGCWC	3 cut(s)	276, 408, 458
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	465, 589, 1040
BslFI	GGGAC	2 cut(s)	20, 64
BslI	CCNNNNNNNGG	5 cut(s)	43, 44, 334, 710, 805
BsmAI	GTCTC	2 cut(s)	1093, 1119
BsmFI	GGGAC	2 cut(s)	20, 64
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	988
Bso31I	GGTCTC	1 cut(s)	1093
BsoBI	CYCGRG	1 cut(s)	269
Bsp119I	TTCGAA	2 cut(s)	354, 924
Bsp1286I	GDGCHC	3 cut(s)	276, 408, 458
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	1 cut(s)	896
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	7 cut(s)	211, 325, 328, 338, 941, 985, 1007
BspANI	GGCC	1 cut(s)	988
BspCNI	CTCAG	4 cut(s)	470, 511, 566, 643
BspLI	GGNNCC	2 cut(s)	733, 865
BspPI	GGATC	1 cut(s)	891
BspQI	GCTCTTC	1 cut(s)	837
BspT104I	TTCGAA	2 cut(s)	354, 924
BspT107I	GGYRCC	1 cut(s)	863
BspTNI	GGTCTC	1 cut(s)	1093
BsrBI	CCGCTC	2 cut(s)	213, 330
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	4 cut(s)	144, 589, 851, 867
BssMI	GATC	1 cut(s)	896
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	2 cut(s)	144, 867
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	4 cut(s)	544, 619, 679, 1130
Bst6I	CTCTTC	1 cut(s)	837
BstACI	GRCGYC	1 cut(s)	462
BstAUI	TGTACA	1 cut(s)	762
BstBAI	YACGTR	1 cut(s)	43
BstBI	TTCGAA	2 cut(s)	354, 924
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	6 cut(s)	56, 457, 519, 553, 630, 800
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	107, 640, 651
BstKTI	GATC	1 cut(s)	899
BstMAI	GTCTC	2 cut(s)	1093, 1119
BstMBI	GATC	1 cut(s)	896
BstMWI	GCNNNNNNNGC	6 cut(s)	635, 853, 947, 956, 991, 1016
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	1028
BstSCI	CCNGG	3 cut(s)	464, 588, 850
BstV1I	GCAGC	4 cut(s)	859, 925, 943, 1055
BstV2I	GAAGAC	3 cut(s)	77, 105, 1125
BsuRI	GGCC	1 cut(s)	988
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	107, 640, 651
BtsIMutI	CAGTG	1 cut(s)	1135
Cac8I	GCNNGC	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	731
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	763
CviAII	CATG	6 cut(s)	32, 145, 410, 961, 1003, 1025
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	6 cut(s)	56, 457, 519, 553, 630, 800
DpnI	GATC	1 cut(s)	898
DpnII	GATC	1 cut(s)	896
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	3 cut(s)	274, 406, 456
Eco130I	CCWWGG	2 cut(s)	144, 867
Eco24I	GRGCYC	3 cut(s)	276, 408, 458
Eco31I	GGTCTC	1 cut(s)	1093
Eco47I	GGWCC	1 cut(s)	731
Eco53kI	GAGCTC	3 cut(s)	274, 406, 456
Eco72I	CACGTG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	3 cut(s)	274, 406, 456
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	2 cut(s)	144, 867
EcoT38I	GRGCYC	3 cut(s)	276, 408, 458
ErhI	CCWWGG	2 cut(s)	144, 867
FaeI	CATG	6 cut(s)	35, 148, 413, 964, 1006, 1028
FalI	AAGNNNNNCTT	4 cut(s)	148, 180, 674, 706
FaqI	GGGAC	2 cut(s)	20, 64
FatI	CATG	6 cut(s)	31, 144, 409, 960, 1002, 1024
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	8 cut(s)	328, 339, 848, 939, 957, 986, 1008, 1044
FokI	GGATG	3 cut(s)	94, 647, 658
FriOI	GRGCYC	3 cut(s)	276, 408, 458
Fsp4HI	GCNGC	8 cut(s)	328, 339, 848, 939, 957, 986, 1008, 1044
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	8 cut(s)	328, 339, 848, 939, 957, 986, 1008, 1044
GsaI	CCCAGC	1 cut(s)	808
HaeIII	GGCC	1 cut(s)	988
HapII	CCGG	3 cut(s)	465, 589, 1040
HgaI	GACGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	6 cut(s)	35, 148, 413, 964, 1006, 1028
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	2 cut(s)	594, 944
HpaII	CCGG	3 cut(s)	465, 589, 1040
HphI	GGTGA	3 cut(s)	293, 697, 725
Hpy166II	GTNNAC	4 cut(s)	615, 688, 763, 776
Hpy188I	TCNGA	5 cut(s)	460, 556, 599, 1105, 1160
Hpy188III	TCNNGA	4 cut(s)	18, 632, 891, 900
Hpy8I	GTNNAC	4 cut(s)	615, 688, 763, 776
HpyAV	CCTTC	3 cut(s)	113, 321, 676
HpyCH4III	ACNGT	4 cut(s)	544, 619, 679, 1130
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	183, 791, 1061, 1100
HpyF10VI	GCNNNNNNNGC	6 cut(s)	635, 853, 947, 956, 991, 1016
HpyF3I	CTNAG	6 cut(s)	56, 457, 519, 553, 630, 800
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	6 cut(s)	35, 148, 413, 964, 1006, 1028
Kzo9I	GATC	1 cut(s)	896
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	4 cut(s)	859, 925, 943, 1055
LweI	GCATC	3 cut(s)	625, 823, 1109
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	574, 604, 916
MalI	GATC	1 cut(s)	898
MbiI	CCGCTC	2 cut(s)	213, 330
MboI	GATC	1 cut(s)	896
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	3 cut(s)	276, 408, 458
MluCI	AATT	7 cut(s)	225, 484, 496, 512, 723, 1082, 1136
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	4 cut(s)	252, 812, 828, 998
MslI	CAYNNNNRTG	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	3 cut(s)	465, 589, 1040
MspR9I	CCNGG	3 cut(s)	466, 590, 852
MunI	CAATTG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	6 cut(s)	635, 853, 947, 956, 991, 1016
NciI	CCSGG	2 cut(s)	466, 590
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	1 cut(s)	896
NlaIII	CATG	6 cut(s)	35, 148, 413, 964, 1006, 1028
NlaIV	GGNNCC	2 cut(s)	733, 865
NmuCI	GTSAC	3 cut(s)	574, 604, 916
NspI	RCATGY	1 cut(s)	1028
NspV	TTCGAA	2 cut(s)	354, 924
PaeR7I	CTCGAG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PctI	GAATGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	594, 944
PkrI	GCNGC	8 cut(s)	329, 340, 849, 940, 958, 987, 1009, 1045
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	731
PsiI	TTATAA	2 cut(s)	495, 567
Psp124BI	GAGCTC	3 cut(s)	276, 408, 458
Psp5II	RGGWCCY	1 cut(s)	731
Psp6I	CCWGG	1 cut(s)	850
PspCI	CACGTG	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	2 cut(s)	733, 865
PspPI	GGNCC	1 cut(s)	731
PspPPI	RGGWCCY	1 cut(s)	731
PspXI	VCTCGAGB	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
RseI	CAYNNNNRTG	1 cut(s)	644
SacI	GAGCTC	3 cut(s)	276, 408, 458
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	4 cut(s)	252, 812, 828, 998
SatI	GCNGC	8 cut(s)	328, 339, 848, 939, 957, 986, 1008, 1044
Sau3AI	GATC	1 cut(s)	896
Sau96I	GGNCC	1 cut(s)	731
ScrFI	CCNGG	3 cut(s)	466, 590, 852
SduI	GDGCHC	3 cut(s)	276, 408, 458
SfaNI	GCATC	3 cut(s)	625, 823, 1109
Sfr274I	CTCGAG	1 cut(s)	269
SfuI	TTCGAA	2 cut(s)	354, 924
SinI	GGWCC	1 cut(s)	731
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	2 cut(s)	269, 660
SmoI	CTYRAG	2 cut(s)	269, 660
Sse9I	AATT	7 cut(s)	225, 484, 496, 512, 723, 1082, 1136
SsiI	CCGC	7 cut(s)	211, 325, 328, 338, 941, 985, 1007
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	3 cut(s)	276, 408, 458
StyD4I	CCNGG	3 cut(s)	464, 588, 850
StyI	CCWWGG	2 cut(s)	144, 867
TaaI	ACNGT	4 cut(s)	544, 619, 679, 1130
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	5 cut(s)	96, 270, 354, 506, 924
TasI	AATT	7 cut(s)	225, 484, 496, 512, 723, 1082, 1136
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	4 cut(s)	330, 341, 988, 1010
TfiI	GAWTC	2 cut(s)	594, 944
Tru1I	TTAA	4 cut(s)	252, 812, 828, 998
Tru9I	TTAA	4 cut(s)	252, 812, 828, 998
TscAI	CASTG	1 cut(s)	1135
TseFI	GTSAC	3 cut(s)	574, 604, 916
TseI	GCWGC	4 cut(s)	847, 938, 956, 1043
Tsp45I	GTSAC	3 cut(s)	574, 604, 916
TspDTI	ATGAA	3 cut(s)	17, 426, 977
TspGWI	ACGGA	1 cut(s)	1137
TspRI	CASTG	1 cut(s)	1135
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	2 cut(s)	484, 723
XceI	RCATGY	1 cut(s)	1028
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.