Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Forward (+)

12572748 .. 12574920

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCTAGCTTCCTCTCTATCCATGGCTTCTACAAGTACTTCTTGTTCTTCTTCACTCTGCAACAAAATCTCCAACTTCTCAATCCCCCACTCGCCCACCCCAATCCCAAGCCACTTCCCGCCACATATTAAACCCCCTAAACCCCTCAAGCTCAAAGCCCATTTCCCCACCTTCTCTCGCCTCTCTTCTCTCACCCAATTTCGCCGCCCTTTGGCGACCTTCGACGGTTTCGAAGTCGAAGAAGACAGTGAAAGTGAAGAACAACAAAAGCCAGAAGCAGAACCCATTGAAAAGGAAGAAGAACAAGAACAAAGAGAGGAAGAGCCAAAGGTAGCGTCTTACAATGACGCTGGGAGGCTCTATGTGGGGAATTTGCCTTATTCTTTGACTTCAACCCAACTGGCTGAGGTGTTTGGTGAGGCAGGAACTGTGGTTTTCTCAGAGATTATTTATGACAGAGTCACAGATAGGAGCAGGGGATTTGGGTTTGTTACAATGTCAACTCTGGAGGAAGCTCAACATGCCATTCGGATGTTTGATGGCTCTCAAGTAGGAGGAAGAAATGTGAAGGTGAACTTCCCAGAAGTGCCAAAAGGAGGGGAAAGGGAAATATTGGGACCCAAGAGCATAAGGAGTGGGTTCAAGGTGTACATAGATAGCCCTCATAAGATTTATGCTGGAAACCTTGGCTGGGGCCTGACTTCACAGGGTCTCAAAGATGCCTTTGAAGGGCAGCCAGGGCTGTTGGGTGCCAAGGTCATATATGAGAGGGGCTCTGGAAGATCCAGAGGTTTTGGGTTTGTCACTTTTGAAACTAATGAGGCTGCAGTAGCTGCTGTTGCTGCCATGAATGAAGTGGAGGTTGATGGGCGGCCTTTGCGATTAAATATGGCTGCAGAAAGAGCTAGGACTGTTTCTGTTTCCTCCTCGCCAGCGTCAGAATCAACTGCACAAGACACAGACAGCAGTGAAGTGGTTTCTCCTCCAGCATCAGAAACAACAACTGCAGAAAACACAGACAGCAGCGAGTTGGTGTCTCCCCCAGCATCAGAAACAAAGACAGAAGATGCTGGCAGCAGTGAATTGATTTCTTCTAGCGTTAGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

370

Amino Acids

39.78

Weight (kDa)

4.92

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	749
AciI	CCGC	3 cut(s)	119, 205, 871
AclWI	GGATC	1 cut(s)	777
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	2 cut(s)	37, 650
AfiI	CCNNNNNNNGG	4 cut(s)	211, 596, 691, 729
AgsI	TTSAA	5 cut(s)	290, 393, 643, 728, 812
AjnI	CCWGG	1 cut(s)	736
AluBI	AGCT	5 cut(s)	8, 151, 515, 833, 905
AluI	AGCT	5 cut(s)	8, 151, 515, 833, 905
Alw26I	GTCTC	2 cut(s)	716, 1041
AlwI	GGATC	1 cut(s)	777
AlwNI	CAGNNNCTG	2 cut(s)	428, 833
AoxI	GGCC	2 cut(s)	694, 872
ApeKI	GCWGC	7 cut(s)	733, 824, 833, 842, 893, 1023, 1074
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspS9I	GGNCC	2 cut(s)	617, 694
AsuHPI	GGTGA	3 cut(s)	184, 428, 583
AsuII	TTCGAA	1 cut(s)	231
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	7 cut(s)	745, 811, 820, 829, 880, 1035, 1086
BccI	CCATC	2 cut(s)	533, 860
BciT130I	CCWGG	1 cut(s)	738
BcoDI	GTCTC	2 cut(s)	716, 1041
BfaI	CTAG	3 cut(s)	5, 906, 1095
BfmI	CTRYAG	3 cut(s)	825, 894, 1005
BisI	GCNGC	9 cut(s)	205, 734, 825, 834, 843, 872, 894, 1024, 1075
BlsI	GCNGC	9 cut(s)	206, 735, 826, 835, 844, 873, 895, 1025, 1076
BmcAI	AGTACT	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	617, 694
BmiI	GGNNCC	4 cut(s)	618, 619, 695, 751
BmrFI	CCNGG	1 cut(s)	738
BmsI	GCATC	4 cut(s)	709, 998, 1055, 1057
BmtI	GCTAGC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
BpmI	CTGGAG	2 cut(s)	527, 969
Bpu10I	CCTNAGC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	131, 531
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	4 cut(s)	21, 685, 737, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 596, 691, 729
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	4 cut(s)	21, 685, 737, 753
BseGI	GGATG	1 cut(s)	537
BseLI	CCNNNNNNNGG	4 cut(s)	211, 596, 691, 729
BseMII	CTCAG	2 cut(s)	396, 453
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	916, 972
BseXI	GCAGC	7 cut(s)	745, 811, 820, 829, 880, 1035, 1086
BseYI	CCCAGC	3 cut(s)	350, 690, 1042
BsgI	GTGCAG	1 cut(s)	933
BshFI	GGCC	2 cut(s)	696, 874
BshNI	GGYRCC	1 cut(s)	749
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	4 cut(s)	211, 596, 691, 729
BsmAI	GTCTC	2 cut(s)	716, 1041
BsmFI	GGGAC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	696, 874
Bso31I	GGTCTC	1 cut(s)	716
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	1 cut(s)	782
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	119, 205, 871
BspANI	GGCC	2 cut(s)	696, 874
BspCNI	CTCAG	2 cut(s)	397, 452
BspLI	GGNNCC	4 cut(s)	618, 619, 695, 751
BspMAI	CTGCAG	3 cut(s)	829, 898, 1009
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	777
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	716
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	4 cut(s)	21, 685, 737, 753
BssMI	GATC	1 cut(s)	782
BssT1I	CCWWGG	3 cut(s)	21, 685, 753
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	4 cut(s)	227, 248, 430, 913
Bst6I	CTCTTC	2 cut(s)	190, 315
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstAUI	TGTACA	1 cut(s)	648
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	6, 933, 1072
BstDEI	CTNAG	2 cut(s)	405, 439
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	537
BstKTI	GATC	1 cut(s)	785
BstMAI	GTCTC	2 cut(s)	716, 1041
BstMBI	GATC	1 cut(s)	782
BstMWI	GCNNNNNNNGC	8 cut(s)	521, 739, 830, 833, 839, 842, 877, 902
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	736
BstSFI	CTRYAG	3 cut(s)	825, 894, 1005
BstV1I	GCAGC	7 cut(s)	745, 811, 820, 829, 880, 1035, 1086
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	696, 874
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	537
BtsI	GCAGTG	2 cut(s)	973, 1084
BtsIMutI	CAGTG	3 cut(s)	253, 973, 1084
Cac8I	GCNNGC	3 cut(s)	6, 933, 1072
CaiI	CAGNNNCTG	2 cut(s)	428, 833
Cfr13I	GGNCC	2 cut(s)	617, 694
CseI	GACGC	4 cut(s)	324, 356, 924, 1093
Csp6I	GTAC	2 cut(s)	36, 649
CviAII	CATG	3 cut(s)	22, 521, 847
CviQI	GTAC	2 cut(s)	36, 649
DdeI	CTNAG	2 cut(s)	405, 439
DpnI	GATC	1 cut(s)	784
DpnII	GATC	1 cut(s)	782
Eam1104I	CTCTTC	2 cut(s)	190, 315
EarI	CTCTTC	2 cut(s)	190, 315
Eco130I	CCWWGG	3 cut(s)	21, 685, 753
Eco24I	GRGCYC	1 cut(s)	776
Eco31I	GGTCTC	1 cut(s)	716
Eco47I	GGWCC	1 cut(s)	617
EcoO109I	RGGNCCY	2 cut(s)	617, 694
EcoRII	CCWGG	1 cut(s)	736
EcoT14I	CCWWGG	3 cut(s)	21, 685, 753
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	3 cut(s)	21, 685, 753
FaeI	CATG	3 cut(s)	25, 524, 850
FalI	AAGNNNNNCTT	4 cut(s)	25, 57, 560, 592
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	3 cut(s)	21, 520, 846
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	9 cut(s)	205, 734, 825, 834, 843, 872, 894, 1024, 1075
FokI	GGATG	1 cut(s)	544
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	9 cut(s)	205, 734, 825, 834, 843, 872, 894, 1024, 1075
FspBI	CTAG	3 cut(s)	5, 906, 1095
GluI	GCNGC	9 cut(s)	205, 734, 825, 834, 843, 872, 894, 1024, 1075
GsaI	CCCAGC	3 cut(s)	354, 694, 1046
GsuI	CTGGAG	2 cut(s)	527, 969
HaeIII	GGCC	2 cut(s)	696, 874
HgaI	GACGC	4 cut(s)	324, 356, 924, 1093
Hin1II	CATG	3 cut(s)	25, 524, 850
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	2 cut(s)	459, 941
HphI	GGTGA	3 cut(s)	184, 428, 583
Hpy166II	GTNNAC	3 cut(s)	501, 574, 649
Hpy188I	TCNGA	6 cut(s)	442, 531, 940, 994, 1051, 1109
Hpy188III	TCNNGA	3 cut(s)	506, 777, 786
Hpy8I	GTNNAC	3 cut(s)	501, 574, 649
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	4 cut(s)	181, 229, 562, 722
HpyCH4III	ACNGT	4 cut(s)	227, 248, 430, 913
HpyCH4V	TGCA	5 cut(s)	60, 827, 896, 950, 1007
HpyF10VI	GCNNNNNNNGC	8 cut(s)	521, 739, 830, 833, 839, 842, 877, 902
HpyF3I	CTNAG	2 cut(s)	405, 439
Hsp92II	CATG	3 cut(s)	25, 524, 850
KflI	GGGWCCC	1 cut(s)	617
Kzo9I	GATC	1 cut(s)	782
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	7 cut(s)	745, 811, 820, 829, 880, 1035, 1086
LweI	GCATC	4 cut(s)	709, 998, 1055, 1057
MaeI	CTAG	3 cut(s)	5, 906, 1095
MaeIII	GTNAC	3 cut(s)	460, 490, 802
MalI	GATC	1 cut(s)	784
MboI	GATC	1 cut(s)	782
MflI	RGATCY	1 cut(s)	782
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	3 cut(s)	197, 370, 1082
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	96
MseI	TTAA	2 cut(s)	129, 884
MslI	CAYNNNNRTG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	8 cut(s)	521, 739, 830, 833, 839, 842, 877, 902
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	782
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	25, 524, 850
NlaIV	GGNNCC	4 cut(s)	618, 619, 695, 751
NmuCI	GTSAC	2 cut(s)	460, 802
NspI	RCATGY	1 cut(s)	524
NspV	TTCGAA	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	941
PflFI	GACNNNGTC	1 cut(s)	458
PkrI	GCNGC	9 cut(s)	206, 735, 826, 835, 844, 873, 895, 1025, 1076
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	736
PspFI	CCCAGC	3 cut(s)	350, 690, 1042
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	4 cut(s)	618, 619, 695, 751
PspPI	GGNCC	2 cut(s)	617, 694
PspPPI	RGGWCCY	1 cut(s)	617
PsrI	GAACNNNNNNTAC	2 cut(s)	28, 60
PstI	CTGCAG	3 cut(s)	829, 898, 1009
PstNI	CAGNNNCTG	2 cut(s)	428, 833
PsuI	RGATCY	1 cut(s)	782
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	2 cut(s)	37, 650
RsaNI	GTAC	2 cut(s)	36, 649
RseI	CAYNNNNRTG	1 cut(s)	530
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	129, 884
SatI	GCNGC	9 cut(s)	205, 734, 825, 834, 843, 872, 894, 1024, 1075
Sau3AI	GATC	1 cut(s)	782
Sau96I	GGNCC	2 cut(s)	617, 694
ScaI	AGTACT	1 cut(s)	37
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	4 cut(s)	709, 998, 1055, 1057
SfcI	CTRYAG	3 cut(s)	825, 894, 1005
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	146, 546
SmoI	CTYRAG	2 cut(s)	146, 546
Sse9I	AATT	3 cut(s)	197, 370, 1082
SsiI	CCGC	3 cut(s)	119, 205, 871
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	3 cut(s)	5, 906, 1095
StyD4I	CCNGG	1 cut(s)	736
StyI	CCWWGG	3 cut(s)	21, 685, 753
TaaI	ACNGT	4 cut(s)	227, 248, 430, 913
TaqI	TCGA	3 cut(s)	222, 231, 237
TasI	AATT	3 cut(s)	197, 370, 1082
TatI	WGTACW	2 cut(s)	35, 648
TauI	GCSGC	2 cut(s)	207, 874
TfiI	GAWTC	1 cut(s)	941
Tru1I	TTAA	2 cut(s)	129, 884
Tru9I	TTAA	2 cut(s)	129, 884
TscAI	CASTG	3 cut(s)	253, 973, 1084
TseFI	GTSAC	2 cut(s)	460, 802
TseI	GCWGC	7 cut(s)	733, 824, 833, 842, 893, 1023, 1074
Tsp45I	GTSAC	2 cut(s)	460, 802
TspDTI	ATGAA	2 cut(s)	863, 867
TspRI	CASTG	3 cut(s)	253, 973, 1084
Tth111I	GACNNNGTC	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XspI	CTAG	3 cut(s)	5, 906, 1095
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.