Rh3AG205000

33 kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013151
Physical Location & Seq
Reverse (-)
20340448 .. 20342349
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG205000.1

Sequence Viewer

Length: 1107 bp
ATGTCGACCTCTTCTCTATCCATGGCTTCCACAAGTACCACTTGCTCTTCTTCACTTTGCAACAAAATCTCTAACTTCTCACTCACCCCAATCCCCACCCACTTACAACCTCAATTTAAACCCCTTAAACCCCTGAAGCTGAAAGCCCATTTCTCCTACTTCTCTCGTCTCTCTTCTCTCCACCATTTCCGCCGCCCCTTTTCGGCCTTAGACGGCCTCGAAGTCGAAGAAGGCAATGAAAGCTCGGAAGAAGAAGGAGAAGAACAAAAGGACCCACAAGCAGAATTGCTTGAAGAAGAAGAAGAAGAAAAAGAAGAGCCAAAGGAAGCAGGGTCTGACAGAAGTGACGCTGGGAGGCTCTATGTGGGGAACTTGCCTTATTCTATGACTTCTACCCAGTTGTCTGAGATTTTCGGCGAGGCCGGTACTGTCACTTATTCAGAGATTATTTATGATAGAGTTACTGATAGGAGCAGGGGATTTGGGTTTGTTACAATGTCGAACGTTGAGGAAGCTCAAGAGGCCATTCGGATGTTCGATGGTTCTCAAGTAGGCGGCCGAACTGTGAGGGTAAACTTCCCAGAAGTGCCGAGAGGGGGTGAAAGGGAAATTTTGGGACCCAAGATAAGGAATCCTGGCTACAAGGTCTACATAGATAGCCCTAATAAGATCTATGCAGGAAACCTTGGTTGGGGCCTGACTTCCCAGGGTCTTAAAGATGCCTTTGAAGGCCAGCCAGGGCTATTGGGTGCCAAGGTCATTTATGAGAGGGGTTCAGGAAGATCCCGAGGTTTTGGATTCGTCACTTTCGACACTGCTGCCGCTGCAGAAGCTGCTGTGACTGCCATGAATGGAGTGGAGGTTGATGGGCGGGCTTTGCGACTAAACATGGCTTCAGAAAGAGCTAGGACTGTAACTGTTACTCCACCTCCAGCATCGGAAACTAGTACAGAAAACACAGAGGCCAGTGAATTGGCTTCTCCCTCAGCATCTGAAACTACTGCAGAAGACACTACAGACAGTGGTGAAGTGGTTTCTCCCCCAGCATCAGAAACAACTGCAGAAGATGCAGACAGCAGTGAATTGATTTCCAGCGTTAGCATCTGA

Protein Analysis

368

Amino Acids

39.67

Weight (kDa)

4.63

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 120 - 190 3.6e-20 RNA recognition motif
RRM_1 PF00076 224 - 294 2.7e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52380
fragaria_vesca FvH4_6g20490 FvH4_6g20490
malus_domestica MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica Prupe.7G093200_v2.0.a1
pyrus_communis pycom12g03670 pycom14g03500
rosa_chinensis RchiOBHm_Chr3g0476371
rosa_laevigata RLG00000023776
rosa_multiflora Rmu_sc0000114.1_g000008
rosa_roxburghii Rroxscaffold_6G00405360
rosa_rugosa Rorug03G0153800
rosa_samantha Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana Rw3G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 749
AccI GTMKAC 2 cut(s) 5, 648
AciI CCGC 5 cut(s) 190, 193, 555, 822, 871
AclI AACGTT 1 cut(s) 504
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 1 cut(s) 609
AcuI CTGAAG 2 cut(s) 155, 879
AfaI GTAC 3 cut(s) 37, 427, 949
AfiI CCNNNNNNNGG 4 cut(s) 202, 596, 627, 691
AgsI TTSAA 2 cut(s) 293, 728
AhlI ACTAGT 1 cut(s) 944
AjnI CCWGG 3 cut(s) 634, 705, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AluBI AGCT 5 cut(s) 139, 243, 515, 833, 905
AluI AGCT 5 cut(s) 139, 243, 515, 833, 905
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 777
AlwNI CAGNNNCTG 3 cut(s) 335, 833, 992
Ama87I CYCGRG 1 cut(s) 786
AoxI GGCC 8 cut(s) 204, 214, 420, 522, 556, 694, 730, 963
ApeKI GCWGC 3 cut(s) 818, 824, 833
ApoI RAATTY 1 cut(s) 609
AspS9I GGNCC 3 cut(s) 271, 617, 694
AsuHPI GGTGA 3 cut(s) 76, 611, 1037
AvaI CYCGRG 1 cut(s) 786
AvaII GGWCC 2 cut(s) 271, 617
BanI GGYRCC 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 1014
BbvCI CCTCAGC 1 cut(s) 985
BbvI GCAGC 3 cut(s) 805, 811, 820
BccI CCATC 2 cut(s) 533, 860
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 800, 834
BciT130I CCWGG 3 cut(s) 636, 707, 738
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 2 cut(s) 906, 945
BfmI CTRYAG 4 cut(s) 825, 1002, 1014, 1059
BglII AGATCT 1 cut(s) 669
BisI GCNGC 6 cut(s) 193, 556, 819, 822, 825, 834
BlsI GCNGC 6 cut(s) 194, 557, 820, 823, 826, 835
Bme1390I CCNGG 3 cut(s) 636, 707, 738
Bme18I GGWCC 2 cut(s) 271, 617
BmeT110I CYCGRG 1 cut(s) 786
BmgT120I GGNCC 3 cut(s) 271, 617, 694
BmiI GGNNCC 5 cut(s) 273, 618, 619, 695, 751
BmrFI CCNGG 3 cut(s) 636, 707, 738
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 5 cut(s) 709, 944, 998, 1055, 1057
BmuI ACTGGG 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 1014
BpmI CTGGAG 1 cut(s) 915
Bpu10I CCTNAGC 1 cut(s) 985
BpuEI CTTGAG 2 cut(s) 501, 531
BsaJI CCNNGG 7 cut(s) 21, 685, 705, 706, 737, 753, 787
BsaXI ACNNNNNCTCC 6 cut(s) 846, 876, 907, 913, 937, 943
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 596, 627, 691
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 397, 966
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 3 cut(s) 636, 707, 738
BseDI CCNNGG 7 cut(s) 21, 685, 705, 706, 737, 753, 787
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 4 cut(s) 202, 596, 627, 691
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 396, 999
BseNI ACTGG 2 cut(s) 397, 966
BseX3I CGGCCG 1 cut(s) 556
BseXI GCAGC 3 cut(s) 805, 811, 820
BseYI CCCAGC 2 cut(s) 350, 1042
Bsh1285I CGRYCG 1 cut(s) 559
BshFI GGCC 8 cut(s) 206, 216, 422, 524, 558, 696, 732, 965
BshNI GGYRCC 1 cut(s) 749
BsiEI CGRYCG 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 786
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 4 cut(s) 202, 596, 627, 691
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 8 cut(s) 206, 216, 422, 524, 558, 696, 732, 965
BsoBI CYCGRG 1 cut(s) 786
Bsp143I GATC 2 cut(s) 669, 782
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 5 cut(s) 190, 193, 555, 822, 871
BspANI GGCC 8 cut(s) 206, 216, 422, 524, 558, 696, 732, 965
BspCNI CTCAG 2 cut(s) 397, 998
BspLI GGNNCC 5 cut(s) 273, 618, 619, 695, 751
BspMAI CTGCAG 3 cut(s) 829, 1006, 1063
BspPI GGATC 1 cut(s) 777
BspQI GCTCTTC 2 cut(s) 52, 309
BspT107I GGYRCC 1 cut(s) 749
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 2 cut(s) 397, 966
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 7 cut(s) 21, 685, 705, 706, 737, 753, 787
BssMI GATC 2 cut(s) 669, 782
BssT1I CCWWGG 3 cut(s) 21, 685, 753
Bst2UI CCWGG 3 cut(s) 636, 707, 738
Bst4CI ACNGT 5 cut(s) 430, 565, 913, 919, 1022
Bst6I CTCTTC 4 cut(s) 16, 52, 178, 309
BstAPI GCANNNNNTGC 2 cut(s) 833, 1067
BstC8I GCNNGC 2 cut(s) 734, 873
BstDEI CTNAG 3 cut(s) 208, 405, 985
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 537
BstKTI GATC 2 cut(s) 672, 785
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 669, 782
BstMCI CGRYCG 1 cut(s) 559
BstMWI GCNNNNNNNGC 8 cut(s) 240, 521, 824, 830, 833, 842, 877, 1067
BstNI CCWGG 3 cut(s) 636, 707, 738
BstSCI CCNGG 3 cut(s) 634, 705, 736
BstSFI CTRYAG 4 cut(s) 825, 1002, 1014, 1059
BstV1I GCAGC 3 cut(s) 805, 811, 820
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 2 cut(s) 669, 782
BstXI CCANNNNNNTGG 1 cut(s) 973
BstYI RGATCY 2 cut(s) 669, 782
BstZI CGGCCG 1 cut(s) 556
BsuRI GGCC 8 cut(s) 206, 216, 422, 524, 558, 696, 732, 965
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 537
BtsI GCAGTG 2 cut(s) 813, 1084
BtsIMutI CAGTG 4 cut(s) 813, 973, 1027, 1084
Cac8I GCNNGC 2 cut(s) 734, 873
CaiI CAGNNNCTG 3 cut(s) 335, 833, 992
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 3 cut(s) 271, 617, 694
CseI GACGC 1 cut(s) 356
Csp6I GTAC 3 cut(s) 36, 426, 948
CviAII CATG 3 cut(s) 22, 847, 889
CviQI GTAC 3 cut(s) 36, 426, 948
DdeI CTNAG 3 cut(s) 208, 405, 985
DpnI GATC 2 cut(s) 671, 784
DpnII GATC 2 cut(s) 669, 782
DraI TTTAAA 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 556
EagI CGGCCG 1 cut(s) 556
Eam1104I CTCTTC 4 cut(s) 16, 52, 178, 309
EarI CTCTTC 4 cut(s) 16, 52, 178, 309
EciI GGCGGA 1 cut(s) 179
EclXI CGGCCG 1 cut(s) 556
Eco130I CCWWGG 3 cut(s) 21, 685, 753
Eco47I GGWCC 2 cut(s) 271, 617
Eco52I CGGCCG 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 155, 879
Eco88I CYCGRG 1 cut(s) 786
EcoO109I RGGNCCY 3 cut(s) 271, 617, 694
EcoRII CCWGG 3 cut(s) 634, 705, 736
EcoT14I CCWWGG 3 cut(s) 21, 685, 753
ErhI CCWWGG 3 cut(s) 21, 685, 753
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 25, 850, 892
FaiI YATR 9 cut(s) 23, 363, 386, 453, 653, 675, 765, 848, 890
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FaqI GGGAC 1 cut(s) 630
FatI CATG 3 cut(s) 21, 846, 888
FauI CCCGC 1 cut(s) 864
FblI GTMKAC 2 cut(s) 5, 648
Fnu4HI GCNGC 6 cut(s) 193, 556, 819, 822, 825, 834
FokI GGATG 1 cut(s) 544
Fsp4HI GCNGC 6 cut(s) 193, 556, 819, 822, 825, 834
FspBI CTAG 2 cut(s) 906, 945
GluI GCNGC 6 cut(s) 193, 556, 819, 822, 825, 834
GsaI CCCAGC 2 cut(s) 354, 1046
GsuI CTGGAG 1 cut(s) 915
HaeIII GGCC 8 cut(s) 206, 216, 422, 524, 558, 696, 732, 965
HapII CCGG 1 cut(s) 423
HgaI GACGC 1 cut(s) 356
Hin1II CATG 3 cut(s) 25, 850, 892
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 631, 798
HpaII CCGG 1 cut(s) 423
HphI GGTGA 3 cut(s) 76, 611, 1037
Hpy166II GTNNAC 3 cut(s) 6, 574, 649
Hpy188III TCNNGA 3 cut(s) 518, 777, 786
Hpy8I GTNNAC 3 cut(s) 6, 574, 649
HpyAV CCTTC 3 cut(s) 224, 248, 722
HpyCH4III ACNGT 5 cut(s) 430, 565, 913, 919, 1022
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 6 cut(s) 60, 677, 827, 1004, 1061, 1070
HpyF10VI GCNNNNNNNGC 8 cut(s) 240, 521, 824, 830, 833, 842, 877, 1067
HpyF3I CTNAG 3 cut(s) 208, 405, 985
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 3 cut(s) 25, 850, 892
KflI GGGWCCC 1 cut(s) 617
Kzo9I GATC 2 cut(s) 669, 782
LguI GCTCTTC 2 cut(s) 52, 309
LmnI GCTCC 1 cut(s) 471
Lsp1109I GCAGC 3 cut(s) 805, 811, 820
LweI GCATC 5 cut(s) 709, 944, 998, 1055, 1057
MaeI CTAG 2 cut(s) 906, 945
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 8 cut(s) 344, 430, 460, 490, 802, 838, 913, 919
MalI GATC 2 cut(s) 671, 784
MboI GATC 2 cut(s) 669, 782
MflI RGATCY 2 cut(s) 669, 782
MluCI AATT 5 cut(s) 113, 284, 609, 971, 1082
MseI TTAA 3 cut(s) 117, 126, 714
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 3 cut(s) 636, 707, 738
MvaI CCWGG 3 cut(s) 636, 707, 738
MwoI GCNNNNNNNGC 8 cut(s) 240, 521, 824, 830, 833, 842, 877, 1067
NcoI CCATGG 1 cut(s) 21
NdeII GATC 2 cut(s) 669, 782
NlaIII CATG 3 cut(s) 25, 850, 892
NlaIV GGNNCC 5 cut(s) 273, 618, 619, 695, 751
NmeAIII GCCGAG 1 cut(s) 615
NmuCI GTSAC 4 cut(s) 344, 430, 802, 838
PasI CCCWGGG 1 cut(s) 706
PciSI GCTCTTC 2 cut(s) 52, 309
PcsI WCGNNNNNNNCGW 1 cut(s) 807
PfeI GAWTC 2 cut(s) 631, 798
PkrI GCNGC 6 cut(s) 194, 557, 820, 823, 826, 835
PpuMI RGGWCCY 2 cut(s) 271, 617
Psp1406I AACGTT 1 cut(s) 504
Psp5II RGGWCCY 2 cut(s) 271, 617
Psp6I CCWGG 3 cut(s) 634, 705, 736
PspFI CCCAGC 2 cut(s) 350, 1042
PspGI CCWGG 3 cut(s) 634, 705, 736
PspN4I GGNNCC 5 cut(s) 273, 618, 619, 695, 751
PspPI GGNCC 3 cut(s) 271, 617, 694
PspPPI RGGWCCY 2 cut(s) 271, 617
PstI CTGCAG 3 cut(s) 829, 1006, 1063
PstNI CAGNNNCTG 3 cut(s) 335, 833, 992
PsuI RGATCY 2 cut(s) 669, 782
RsaI GTAC 3 cut(s) 37, 427, 949
RsaNI GTAC 3 cut(s) 36, 426, 948
RseI CAYNNNNRTG 1 cut(s) 530
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 2 cut(s) 52, 309
SaqAI TTAA 3 cut(s) 117, 126, 714
SatI GCNGC 6 cut(s) 193, 556, 819, 822, 825, 834
Sau3AI GATC 2 cut(s) 669, 782
Sau96I GGNCC 3 cut(s) 271, 617, 694
ScrFI CCNGG 3 cut(s) 636, 707, 738
SfaNI GCATC 5 cut(s) 709, 944, 998, 1055, 1057
SfcI CTRYAG 4 cut(s) 825, 1002, 1014, 1059
SinI GGWCC 2 cut(s) 271, 617
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 2 cut(s) 516, 546
SmoI CTYRAG 2 cut(s) 516, 546
SpeI ACTAGT 1 cut(s) 944
Sse9I AATT 5 cut(s) 113, 284, 609, 971, 1082
SsiI CCGC 5 cut(s) 190, 193, 555, 822, 871
SspMI CTAG 2 cut(s) 906, 945
StyD4I CCNGG 3 cut(s) 634, 705, 736
StyI CCWWGG 3 cut(s) 21, 685, 753
TaaI ACNGT 5 cut(s) 430, 565, 913, 919, 1022
TaiI ACGT 1 cut(s) 507
TaqI TCGA 6 cut(s) 5, 219, 225, 500, 537, 810
TasI AATT 5 cut(s) 113, 284, 609, 971, 1082
TatI WGTACW 1 cut(s) 947
TauI GCSGC 3 cut(s) 195, 558, 824
TfiI GAWTC 2 cut(s) 631, 798
Tru1I TTAA 3 cut(s) 117, 126, 714
Tru9I TTAA 3 cut(s) 117, 126, 714
TscAI CASTG 4 cut(s) 820, 973, 1027, 1084
TseFI GTSAC 4 cut(s) 344, 430, 802, 838
TseI GCWGC 3 cut(s) 818, 824, 833
Tsp45I GTSAC 4 cut(s) 344, 430, 802, 838
TspDTI ATGAA 2 cut(s) 252, 863
TspRI CASTG 4 cut(s) 820, 973, 1027, 1084
VpaK11BI GGWCC 2 cut(s) 271, 617
XapI RAATTY 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmiI GTMKAC 2 cut(s) 5, 648
XspI CTAG 2 cut(s) 906, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.