Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Reverse (-)

3867392 .. 3869341

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1041200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAAAATCCAAAAATCCAGGAAACCTTATCCATGCCCCACATCGGCTTTCGTCAAATGGGAAGCCCCTCCTCCCCGTCTTCTTCCGCTTGAAGACCTTCCTTCCCCAAACACCATTTCCTCCCACACAATGCTATCCATGGCTTCCACAAGTACTTCTTGCTCTTCTCCCCTCTGCAACAAAATCTCCAACTTCTCAATCTCCCACTCACTCCCTCCAATCCCCACTCACTTACCACCAAACATTAAACCCCTAAAACCCCTCAAGCTCAAAGCCCGTTTCCATAGCTTCCCTCACCTCTCTCCTGCCCCCAGTTTCCGCCGCTCGTTGGCGGCGTTCGACGGCTTTGAAGCCAAAGAAGACAGTGAAAGCCAAGACGAACAAGACCCAGAAACACAGCTCCATGAAAAGCAAGAAGAAGAAGAAGAAGAAGAGCAAAGAGAGGAAGTGGCAAAGATATCAGACGTTGGGAGGCTATATGTGGGGAATTTGCCCTATAACTTGACTTCAACCCAATTGGCTGAGGTTTTCGGGGAGGCCGGCACGGTGGTTTTTTCAGAGATTATTTATGACAGAGTCACAGATAGAAGCAGGGGATTTGGATTTGTTGCAATGTCAACTGTTGAGGAAGCTCAGGATGCCATTAGGATGTTTGATGGCTCTCAAGTAGGAGGTAGAAGTGTGAAGGTGAACTTCCCAGAAGTGCCAAGAGGAGGCGAAAGGGAAATGTTAGGACCCAACAGACCAAGGGCTGGGTTCAAGGTGTACATAGATAGCCCTCATAAGGTTTATGCAGGAAACCTTAGTTGGGGTTTAACTTCACAGGGTCTTAAGGATGCCTTTGAAGACCAGCCAGGGCTGTTGGGTGCCAAGGTCATATATGAGAGGGTTTCTGGAAGATCCAGAGGTTTCGGGTTTGTGACATTCGAAACCAATGAGGCTGCGGAATCAGCTGTCGCTGCCATGAATGGAGTGGAGGTTGATGGACGGCCTTTGCGATTAAATATGGCAGCAGAGAGAGCAAGGACCGTTGTTTCCTCTCCAGCAGCATCAGAAACAACTGCACAAGACACAGACAGCAGTGAAGTGGTTTCTCCACCAGCATCAGAAACAACTACAGACAACACGGACAACAGTGAATTGGTCTCTCCTCCAGCGTCGGATACAACCACTGACAACACAGACAACAGTGAATTGGTCTCTTCTCCAGCATCGGATACAACAACAGAAGACGCAGACAGCGGGGAATTGGTTTCCAGCATTAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

424

Amino Acids

45.91

Weight (kDa)

4.77

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	159 - 228	9.8e-18	RNA recognition motif
RRM_1	PF00076	263 - 333	2.1e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccBSI	CCGCTC	1 cut(s)	324
AciI	CCGC	6 cut(s)	86, 319, 322, 332, 944, 1242
AclWI	GGATC	1 cut(s)	894
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	2 cut(s)	154, 767
AfiI	CCNNNNNNNGG	6 cut(s)	43, 328, 713, 752, 784, 808
AflII	CTTAAG	1 cut(s)	830
AgsI	TTSAA	5 cut(s)	92, 350, 510, 760, 845
AjnI	CCWGG	2 cut(s)	17, 853
AjuI	GAANNNNNNNTTGG	4 cut(s)	100, 132, 790, 822
AluBI	AGCT	5 cut(s)	268, 288, 400, 632, 953
AluI	AGCT	5 cut(s)	268, 288, 400, 632, 953
Alw26I	GTCTC	2 cut(s)	1150, 1204
AlwI	GGATC	1 cut(s)	894
AoxI	GGCC	2 cut(s)	537, 989
ApeKI	GCWGC	4 cut(s)	941, 959, 1010, 1046
ApoI	RAATTY	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	734, 1026
AsuHPI	GGTGA	2 cut(s)	287, 700
AsuII	TTCGAA	1 cut(s)	927
AvaII	GGWCC	2 cut(s)	734, 1026
BanI	GGYRCC	1 cut(s)	866
BbsI	GAAGAC	5 cut(s)	71, 99, 366, 852, 1236
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	4 cut(s)	928, 946, 1022, 1058
BccI	CCATC	2 cut(s)	650, 977
BceAI	ACGGC	2 cut(s)	358, 1004
BciT130I	CCWGG	2 cut(s)	19, 855
BciVI	GTATCC	2 cut(s)	1156, 1210
BcoDI	GTCTC	2 cut(s)	1150, 1204
BfmI	CTRYAG	1 cut(s)	1116
BfrI	CTTAAG	1 cut(s)	830
BfuI	GTATCC	2 cut(s)	1156, 1210
BisI	GCNGC	6 cut(s)	322, 333, 942, 960, 1011, 1047
BlsI	GCNGC	6 cut(s)	323, 334, 943, 961, 1012, 1048
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	19, 855
Bme18I	GGWCC	2 cut(s)	734, 1026
BmgT120I	GGNCC	2 cut(s)	734, 1026
BmiI	GGNNCC	2 cut(s)	736, 868
BmrFI	CCNGG	2 cut(s)	19, 855
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	5 cut(s)	628, 826, 1058, 1112, 1220
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	5 cut(s)	71, 99, 366, 852, 1236
BpmI	CTGGAG	3 cut(s)	1026, 1137, 1191
Bpu10I	CCTNAGC	2 cut(s)	522, 633
Bpu14I	TTCGAA	1 cut(s)	927
BpuEI	CTTGAG	2 cut(s)	248, 648
BsaI	GGTCTC	2 cut(s)	1150, 1204
BsaJI	CCNNGG	4 cut(s)	138, 746, 854, 870
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 963, 993
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 328, 713, 752, 784, 808
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	19, 855
BseDI	CCNNGG	4 cut(s)	138, 746, 854, 870
BseGI	GGATG	3 cut(s)	643, 654, 841
BseLI	CCNNNNNNNGG	6 cut(s)	43, 328, 713, 752, 784, 808
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	513, 647
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	3 cut(s)	60, 726, 1140
BseXI	GCAGC	4 cut(s)	928, 946, 1022, 1058
BseYI	CCCAGC	1 cut(s)	752
BsgI	GTGCAG	1 cut(s)	1047
BshFI	GGCC	2 cut(s)	539, 991
BshNI	GGYRCC	1 cut(s)	866
BsiSI	CCGG	1 cut(s)	540
BslI	CCNNNNNNNGG	6 cut(s)	43, 328, 713, 752, 784, 808
BsmAI	GTCTC	2 cut(s)	1150, 1204
BsnI	GGCC	2 cut(s)	539, 991
Bso31I	GGTCTC	2 cut(s)	1150, 1204
Bsp119I	TTCGAA	1 cut(s)	927
Bsp1407I	TGTACA	1 cut(s)	765
Bsp143I	GATC	1 cut(s)	899
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	6 cut(s)	86, 319, 322, 332, 944, 1242
BspANI	GGCC	2 cut(s)	539, 991
BspCNI	CTCAG	2 cut(s)	514, 646
BspLI	GGNNCC	2 cut(s)	736, 868
BspPI	GGATC	1 cut(s)	894
BspQI	GCTCTTC	2 cut(s)	169, 426
BspT104I	TTCGAA	1 cut(s)	927
BspT107I	GGYRCC	1 cut(s)	866
BspTI	CTTAAG	1 cut(s)	830
BspTNI	GGTCTC	2 cut(s)	1150, 1204
BsrBI	CCGCTC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	618
BsrFI	RCCGGY	1 cut(s)	539
BsrGI	TGTACA	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	4 cut(s)	138, 746, 854, 870
BssMI	GATC	1 cut(s)	899
BssT1I	CCWWGG	3 cut(s)	138, 746, 870
Bst2UI	CCWGG	2 cut(s)	19, 855
Bst4CI	ACNGT	6 cut(s)	365, 547, 622, 1030, 1136, 1190
Bst6I	CTCTTC	3 cut(s)	169, 426, 1207
BstAFI	CTTAAG	1 cut(s)	830
BstAUI	TGTACA	1 cut(s)	765
BstBI	TTCGAA	1 cut(s)	927
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	3 cut(s)	522, 633, 803
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	643, 654, 841
BstKTI	GATC	1 cut(s)	902
BstMAI	GTCTC	2 cut(s)	1150, 1204
BstMBI	GATC	1 cut(s)	899
BstMWI	GCNNNNNNNGC	4 cut(s)	638, 950, 959, 1019
BstNI	CCWGG	2 cut(s)	19, 855
BstSCI	CCNGG	2 cut(s)	17, 853
BstSFI	CTRYAG	1 cut(s)	1116
BstV1I	GCAGC	4 cut(s)	928, 946, 1022, 1058
BstV2I	GAAGAC	5 cut(s)	71, 99, 366, 852, 1236
BstX2I	RGATCY	1 cut(s)	899
BstYI	RGATCY	1 cut(s)	899
BsuI	GTATCC	2 cut(s)	1156, 1210
BsuRI	GGCC	2 cut(s)	539, 991
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	643, 654, 841
BtsI	GCAGTG	1 cut(s)	1087
BtsIMutI	CAGTG	5 cut(s)	370, 1087, 1141, 1170, 1195
Cac8I	GCNNGC	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	734, 1026
CseI	GACGC	2 cut(s)	1146, 1241
Csp6I	GTAC	2 cut(s)	153, 766
CviAII	CATG	4 cut(s)	33, 139, 404, 964
CviQI	GTAC	2 cut(s)	153, 766
DdeI	CTNAG	3 cut(s)	522, 633, 803
DpnI	GATC	1 cut(s)	901
DpnII	GATC	1 cut(s)	899
Eam1104I	CTCTTC	3 cut(s)	169, 426, 1207
EarI	CTCTTC	3 cut(s)	169, 426, 1207
EciI	GGCGGA	1 cut(s)	308
Eco130I	CCWWGG	3 cut(s)	138, 746, 870
Eco31I	GGTCTC	2 cut(s)	1150, 1204
Eco32I	GATATC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	734, 1026
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	17, 853
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	3 cut(s)	138, 746, 870
ErhI	CCWWGG	3 cut(s)	138, 746, 870
FaeI	CATG	4 cut(s)	36, 142, 407, 967
FalI	AAGNNNNNCTT	6 cut(s)	142, 174, 677, 709, 824, 856
FatI	CATG	4 cut(s)	32, 138, 403, 963
FauI	CCCGC	1 cut(s)	1235
Fnu4HI	GCNGC	6 cut(s)	322, 333, 942, 960, 1011, 1047
FokI	GGATG	3 cut(s)	650, 661, 848
Fsp4HI	GCNGC	6 cut(s)	322, 333, 942, 960, 1011, 1047
GluI	GCNGC	6 cut(s)	322, 333, 942, 960, 1011, 1047
GsaI	CCCAGC	1 cut(s)	756
GsuI	CTGGAG	3 cut(s)	1026, 1137, 1191
HaeIII	GGCC	2 cut(s)	539, 991
HapII	CCGG	1 cut(s)	540
HgaI	GACGC	2 cut(s)	1146, 1241
Hin1II	CATG	4 cut(s)	36, 142, 407, 967
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HinfI	GANTC	2 cut(s)	576, 947
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	2 cut(s)	287, 700
Hpy166II	GTNNAC	3 cut(s)	618, 691, 766
Hpy188I	TCNGA	7 cut(s)	463, 559, 1054, 1108, 1162, 1216, 1271
Hpy188III	TCNNGA	3 cut(s)	635, 894, 903
Hpy8I	GTNNAC	3 cut(s)	618, 691, 766
Hpy99I	CGWCG	2 cut(s)	344, 1162
HpyAV	CCTTC	3 cut(s)	107, 111, 679
HpyCH4III	ACNGT	6 cut(s)	365, 547, 622, 1030, 1136, 1190
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	4 cut(s)	177, 611, 794, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	638, 950, 959, 1019
HpyF3I	CTNAG	3 cut(s)	522, 633, 803
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	4 cut(s)	36, 142, 407, 967
KroI	GCCGGC	1 cut(s)	539
KroNI	GCCGGC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	899
LguI	GCTCTTC	2 cut(s)	169, 426
LmnI	GCTCC	1 cut(s)	405
Lsp1109I	GCAGC	4 cut(s)	928, 946, 1022, 1058
LweI	GCATC	5 cut(s)	628, 826, 1058, 1112, 1220
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	577, 919
MalI	GATC	1 cut(s)	901
MbiI	CCGCTC	1 cut(s)	324
MboI	GATC	1 cut(s)	899
MfeI	CAATTG	1 cut(s)	515
MflI	RGATCY	1 cut(s)	899
MluCI	AATT	5 cut(s)	487, 515, 1139, 1193, 1247
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	2 cut(s)	213, 1140
MroNI	GCCGGC	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	4 cut(s)	246, 815, 831, 1001
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	2 cut(s)	953, 1242
MspCI	CTTAAG	1 cut(s)	830
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	2 cut(s)	19, 855
MunI	CAATTG	1 cut(s)	515
MvaI	CCWGG	2 cut(s)	19, 855
MwoI	GCNNNNNNNGC	4 cut(s)	638, 950, 959, 1019
NaeI	GCCGGC	1 cut(s)	541
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	899
NgoMIV	GCCGGC	1 cut(s)	539
NlaIII	CATG	4 cut(s)	36, 142, 407, 967
NlaIV	GGNNCC	2 cut(s)	736, 868
NmuCI	GTSAC	2 cut(s)	577, 919
NspV	TTCGAA	1 cut(s)	927
PciSI	GCTCTTC	2 cut(s)	169, 426
PcsI	WCGNNNNNNNCGW	2 cut(s)	332, 994
PdiI	GCCGGC	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	947
PflFI	GACNNNGTC	1 cut(s)	575
PflMI	CCANNNNNTGG	1 cut(s)	752
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	6 cut(s)	323, 334, 943, 961, 1012, 1048
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	734
Psp5II	RGGWCCY	1 cut(s)	734
Psp6I	CCWGG	2 cut(s)	17, 853
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	2 cut(s)	17, 853
PspN4I	GGNNCC	2 cut(s)	736, 868
PspPI	GGNCC	2 cut(s)	734, 1026
PspPPI	RGGWCCY	1 cut(s)	734
PsuI	RGATCY	1 cut(s)	899
PsyI	GACNNNGTC	1 cut(s)	575
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	2 cut(s)	154, 767
RsaNI	GTAC	2 cut(s)	153, 766
RseI	CAYNNNNRTG	1 cut(s)	647
SapI	GCTCTTC	2 cut(s)	169, 426
SaqAI	TTAA	4 cut(s)	246, 815, 831, 1001
SatI	GCNGC	6 cut(s)	322, 333, 942, 960, 1011, 1047
Sau3AI	GATC	1 cut(s)	899
Sau96I	GGNCC	2 cut(s)	734, 1026
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	2 cut(s)	19, 855
SfaNI	GCATC	5 cut(s)	628, 826, 1058, 1112, 1220
SfcI	CTRYAG	1 cut(s)	1116
SfuI	TTCGAA	1 cut(s)	927
SinI	GGWCC	2 cut(s)	734, 1026
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	3 cut(s)	263, 663, 830
SmoI	CTYRAG	3 cut(s)	263, 663, 830
Sse9I	AATT	5 cut(s)	487, 515, 1139, 1193, 1247
SsiI	CCGC	6 cut(s)	86, 319, 322, 332, 944, 1242
StyD4I	CCNGG	2 cut(s)	17, 853
StyI	CCWWGG	3 cut(s)	138, 746, 870
TaaI	ACNGT	6 cut(s)	365, 547, 622, 1030, 1136, 1190
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	339, 927
TasI	AATT	5 cut(s)	487, 515, 1139, 1193, 1247
TatI	WGTACW	2 cut(s)	152, 765
TauI	GCSGC	2 cut(s)	324, 335
TfiI	GAWTC	1 cut(s)	947
Tru1I	TTAA	4 cut(s)	246, 815, 831, 1001
Tru9I	TTAA	4 cut(s)	246, 815, 831, 1001
TscAI	CASTG	5 cut(s)	370, 1087, 1141, 1177, 1195
TseFI	GTSAC	2 cut(s)	577, 919
TseI	GCWGC	4 cut(s)	941, 959, 1010, 1046
Tsp45I	GTSAC	2 cut(s)	577, 919
TspDTI	ATGAA	3 cut(s)	17, 420, 980
TspGWI	ACGGA	1 cut(s)	1142
TspRI	CASTG	5 cut(s)	370, 1087, 1141, 1177, 1195
Tth111I	GACNNNGTC	1 cut(s)	575
Van91I	CCANNNNNTGG	1 cut(s)	752
Vha464I	CTTAAG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	734, 1026
XapI	RAATTY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XmnI	GAANNNNTTC	1 cut(s)	96
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.