Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011657

Physical Location & Seq

Genomic Coordinates Reverse (-)

19924538 .. 19927026

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGTGGATTAGATGTTAAAAAAGTGGTTAAAGGAGATGAAGGATGGCGTCTACTTTCTTGCAATTGGTTACATGGAGGAGTTGTTCATTTACTGATGAACATGTTGACTCTTTTATTCATCGGTATACGTATGGAACGTGAATTTGGTTTTATTCGGATTGGATTGCTTTATTTGATATCAGGGTTTGGAGGAAGCATATTGTCAGCTCTTTTCCTCCGTTCAAACATCTCTGTTGGAGCATCTGGTGCCGTGTTTGGTTTACTTGGAGGAATGCTCTCTGAGATCTTTATCAACTGGACAATCTATTCTAACAAGGTTGTGACGATTGTAACTCTTGTATTGATTGTGGCGGTGAACTTGGGGCTCGGTGTGCTCCCTGGAGTAGATAACTTTGCTCATATCGGAGGGTTTGCTACAGGTTTTCTTCTTGGATTTGTGCTCTTAATCCGTCCCCATTACGGATGGATCAACCAAAGAAACGGTCCTGGAGCTAAACCCCACAGGTTCAAGATATATCAGGGCATATTATGGACTATCTCTCTTCTCATCTTGGTCGCTGGGTTCATTGTTGGATTGATCTCTCTCTTCAACAATGTCGATGGAAACGAACATTGTTCGTGGTGTCATTATCTTTCATGTGTTCCAACATCTAAATGGAGCTGTAACCGAGAACCAGCCTCTTGCACGACGACTCAATTAGGTAACCAATTGAGCATGACTTGTTTGAGGAATGGGAAATCAGCATCTTACATTTTGGCAAATCCCTCGGATTCACGGATTAATAGCTTATGTGTTCAGCTTTGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

270

Amino Acids

29.45

Weight (kDa)

9.26

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	138 - 273	3.3e-41	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53780 AT3G53780 AT3G53780
fragaria_vesca	FvH4_6g13560
malus_domestica	MD04G1130000.v1.1 MD12G1143100.v1.1
prunus_persica	Prupe.6G256700_v2.0.a1
pyrus_communis	pycom04g11830 pycom12g13780
rosa_chinensis	RchiOBHm_Chr3g0466421
rosa_laevigata	RLG00000024575
rosa_multiflora	Rmu_co8379997.1_g000002 Rmu_sc0003332.1_g000027 Rmu_sc0003480.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414480
rosa_samantha	Rh3AG128300 Rh3BG149600 Rh3DG150300
rosa_wichuraiana	Rw3G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	2 cut(s)	52, 127
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	225, 511, 592
AjnI	CCWGG	2 cut(s)	379, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	5 cut(s)	209, 494, 663, 789, 802
AluI	AGCT	5 cut(s)	209, 494, 663, 789, 802
Alw21I	GWGCWC	2 cut(s)	378, 444
AlwI	GGATC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AseI	ATTAAT	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	378, 444
BccI	CCATC	3 cut(s)	39, 459, 596
BceAI	ACGGC	2 cut(s)	236, 792
BcgI	CGANNNNNNTGC	2 cut(s)	750, 784
BciT130I	CCWGG	2 cut(s)	381, 489
BfmI	CTRYAG	1 cut(s)	417
BglII	AGATCT	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	381, 489
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	381, 489
BmsI	GCATC	2 cut(s)	251, 755
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpmI	CTGGAG	2 cut(s)	402, 510
BsaAI	YACGTR	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	379, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	381, 489
BseDI	CCNNGG	2 cut(s)	379, 768
BseGI	GGATG	2 cut(s)	50, 470
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	560
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	378, 444
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	369, 378, 444
Bsp143I	GATC	3 cut(s)	285, 468, 579
BspACI	CCGC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	379, 768
BssMI	GATC	3 cut(s)	285, 468, 579
BssNAI	GTATAC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	381, 489
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	549, 593
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	704
BstF5I	GGATG	2 cut(s)	50, 470
BstKTI	GATC	3 cut(s)	288, 471, 582
BstMBI	GATC	3 cut(s)	285, 468, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 373
BstNI	CCWGG	2 cut(s)	381, 489
BstNSI	RCATGY	1 cut(s)	106
BstPI	GGTNACC	1 cut(s)	704
BstSCI	CCNGG	2 cut(s)	379, 487
BstSFI	CTRYAG	1 cut(s)	417
BstSNI	TACGTA	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BstZ17I	GTATAC	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	50, 470
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	1 cut(s)	38
CviAII	CATG	4 cut(s)	74, 103, 639, 718
CviJI	RGCY	7 cut(s)	209, 367, 494, 663, 680, 789, 802
CviKI_1	RGCY	7 cut(s)	209, 367, 494, 663, 680, 789, 802
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	287, 470, 581
DpnII	GATC	3 cut(s)	285, 468, 579
Eam1104I	CTCTTC	2 cut(s)	549, 593
EarI	CTCTTC	2 cut(s)	549, 593
Eco105I	TACGTA	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	485
Eco91I	GGTNACC	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	379, 487
EcoRV	GATATC	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	4 cut(s)	77, 106, 642, 721
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	4 cut(s)	73, 102, 638, 717
FblI	GTMKAC	2 cut(s)	52, 127
FokI	GGATG	2 cut(s)	57, 477
FriOI	GRGCYC	1 cut(s)	369
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	2 cut(s)	402, 510
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	77, 106, 642, 721
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	109, 694, 773
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	5 cut(s)	53, 108, 128, 263, 358
Hpy188I	TCNGA	4 cut(s)	159, 283, 407, 772
Hpy188III	TCNNGA	1 cut(s)	511
Hpy8I	GTNNAC	5 cut(s)	53, 108, 128, 263, 358
Hpy99I	CGWCG	1 cut(s)	694
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	2 cut(s)	130, 139
HpyCH4V	TGCA	2 cut(s)	63, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 373
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	2 cut(s)	130, 139
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	77, 106, 642, 721
Kzo9I	GATC	3 cut(s)	285, 468, 579
LmnI	GCTCC	4 cut(s)	239, 381, 491, 660
LweI	GCATC	2 cut(s)	251, 755
MaeII	ACGT	2 cut(s)	130, 139
MaeIII	GTNAC	5 cut(s)	69, 322, 331, 665, 704
MalI	GATC	3 cut(s)	287, 470, 581
MboI	GATC	3 cut(s)	285, 468, 579
MboII	GAAGA	3 cut(s)	419, 536, 580
MfeI	CAATTG	2 cut(s)	64, 710
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	3 cut(s)	369, 378, 444
MluCI	AATT	4 cut(s)	64, 143, 698, 710
MlyI	GAGTC	2 cut(s)	103, 688
MmeI	TCCRAC	3 cut(s)	217, 553, 671
MnlI	CCTC	8 cut(s)	71, 185, 227, 263, 401, 691, 723, 778
MseI	TTAA	4 cut(s)	18, 30, 446, 783
MslI	CAYNNNNRTG	1 cut(s)	655
MspR9I	CCNGG	2 cut(s)	381, 489
MunI	CAATTG	2 cut(s)	64, 710
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	2 cut(s)	381, 489
MwoI	GCNNNNNNNGC	2 cut(s)	248, 373
NdeII	GATC	3 cut(s)	285, 468, 579
NlaIII	CATG	4 cut(s)	77, 106, 642, 721
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	2 cut(s)	136, 606
PctI	GAATGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	773
PfoI	TCCNGGA	1 cut(s)	487
PleI	GAGTC	2 cut(s)	103, 688
PpsI	GAGTC	2 cut(s)	103, 688
Ppu21I	YACGTR	1 cut(s)	131
PscI	ACATGT	1 cut(s)	102
PshBI	ATTAAT	1 cut(s)	783
Psp6I	CCWGG	2 cut(s)	379, 487
PspEI	GGTNACC	1 cut(s)	704
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	379, 487
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	655
SaqAI	TTAA	4 cut(s)	18, 30, 446, 783
Sau3AI	GATC	3 cut(s)	285, 468, 579
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	2 cut(s)	103, 688
ScrFI	CCNGG	2 cut(s)	381, 489
SduI	GDGCHC	3 cut(s)	369, 378, 444
SfaNI	GCATC	2 cut(s)	251, 755
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	655
SnaBI	TACGTA	1 cut(s)	131
Sse9I	AATT	4 cut(s)	64, 143, 698, 710
SsiI	CCGC	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	379, 487
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	2 cut(s)	133, 142
TaqI	TCGA	1 cut(s)	600
TasI	AATT	4 cut(s)	64, 143, 698, 710
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	4 cut(s)	18, 30, 446, 783
Tru9I	TTAA	4 cut(s)	18, 30, 446, 783
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	6 cut(s)	54, 77, 109, 113, 556, 627
TspGWI	ACGGA	4 cut(s)	209, 440, 477, 793
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	654
XmiI	GTMKAC	2 cut(s)	52, 127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.