RchiOBHm_Chr3g0466421

Rhomboid-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
12861547 .. 12864920
3374 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43251

Sequence Viewer

Length: 1167 bp
ATGGCGGCAGATCACTCTCAATCAGGCACCACCCAGTTGCGGCTGAACTCGCGGCGGAGCTACGTGGTCCACCCCGTTGACATTGAGACGCCACCTCTAACTTCCCCGGCTCCCGCCACGCCCGCCGTGTTCCGGGAAATCAAGCATTTCAAGAAATGGGTTGTCTGGTTGATACCTGCTTTTGTTATCATCAATACCATCATGTTTATCATCACTATGTATGTCAACAACTGCCCCAAGAACTCGGTCTCTTGCATTGCCACGTTCTTGGGGAGGTTCTCGTTCCAGCCTTTTAAGGAGAACCCTCTTCTTGGACCATCATCGTCTACGTTACAGAAGATGGGTGCTTTAGATGTGAAAAAGGTGGTTGATGATCACCAGGGGTGGCTTCTCATCACTTGCAATTGGCTACATGGTGGAGTTTTCCATTTGTTGGCGAATATGCTGAGTCTTTTGGTTATTGGGTACCGGCTAGAGCAAGAATTTGGTTTTGTGCGGATTGGTTTGCTATATGTCATCTCTGGACTTGGTGGGAGTTTGATGTCTTCACTTTTCATCCAGTCAAATATCTCTGTTGGTGCTTCCGGTGCACTTTTTGGATTGCTGGGAGCCATGCTTTCTGAACTTATCACTAACTGGACGATATATGCTAGTAAGTTTGGAGCGCTTTTCACCCTCCTGATCATCATAGCAATCAATTTGGCAGTGGGAATTCTCCCACATGTGGATAACTTTGCTCACATTGGAGGATTCCTTTCGGGTTTCTTTCTGGGGTTCGTATTTCTTATCCGCCCTCAGTTCGGATGGGTTAACCAAAGATATGCTCCTCCAGAGTACAGATCATCTGAAGTTAAATCTAAGTTCAAGACCTATCAGTGCATTTTTTGGATCCTTTCGCTGGTTATTTTAATCGTTGGATTTACTGTTGGCCTGGTTATGCTTCTTCGGGGAGTTGATGCAAATGAACATTGTTCTTGGTGTCATTATTTGTCTTGTGTTCCTACATCAAAATGGAGCTGCAATTCAGAGCCTGCATACTGCTCGTCAACCCAGACAGGTGACCAGCTCTTTTTAACATGCTCAAGCAATGGAAAGAACGGCACATATACATATCCAAATGCAAGCAGTTCTCAGATCCAGGGGTTATGTTCTCAGCTTTGCAGTTGA

Protein Analysis

388

Amino Acids

42.83

Weight (kDa)

8.78

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 126 - 262 1.8e-40 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011657)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 2 cut(s) 26, 465
AccB7I CCANNNNNTGG 1 cut(s) 433
AccI GTMKAC 1 cut(s) 326
AccII CGCG 1 cut(s) 52
AciI CCGC 8 cut(s) 5, 40, 52, 55, 114, 123, 496, 790
AclWI GGATC 3 cut(s) 883, 896, 1129
AcsI RAATTY 2 cut(s) 482, 711
AcuI CTGAAG 1 cut(s) 867
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 467, 836
AfeI AGCGCT 1 cut(s) 666
AfiI CCNNNNNNNGG 7 cut(s) 39, 132, 311, 433, 724, 800, 898
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 2 cut(s) 151, 865
AjnI CCWGG 3 cut(s) 378, 930, 1137
AluBI AGCT 4 cut(s) 60, 1017, 1066, 1156
AluI AGCT 4 cut(s) 60, 1017, 1066, 1156
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 2 cut(s) 80, 253
Alw44I GTGCAC 1 cut(s) 588
AlwI GGATC 3 cut(s) 883, 896, 1129
AlwNI CAGNNNCTG 1 cut(s) 1031
Aor51HI AGCGCT 1 cut(s) 666
AoxI GGCC 1 cut(s) 928
ApaLI GTGCAC 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 1017
ApoI RAATTY 2 cut(s) 482, 711
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 667
AspS9I GGNCC 2 cut(s) 67, 314
AsuC2I CCSGG 2 cut(s) 107, 134
AsuHPI GGTGA 3 cut(s) 368, 664, 1070
AvaII GGWCC 2 cut(s) 67, 314
BaeGI GKGCMC 1 cut(s) 592
BamHI GGATCC 1 cut(s) 888
BanI GGYRCC 2 cut(s) 26, 465
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 592
BbvI GCAGC 1 cut(s) 1004
BccI CCATC 4 cut(s) 206, 325, 334, 798
BceAI ACGGC 2 cut(s) 110, 1114
BcgI CGANNNNNNTGC 2 cut(s) 1023, 1057
BciT130I CCWGG 3 cut(s) 380, 932, 1139
BclI TGATCA 2 cut(s) 373, 681
BcnI CCSGG 2 cut(s) 107, 134
BcoDI GTCTC 2 cut(s) 80, 253
BfaI CTAG 2 cut(s) 473, 651
BfoI RGCGCY 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 4 cut(s) 6, 41, 53, 1018
BlsI GCNGC 4 cut(s) 7, 42, 54, 1019
Bme1390I CCNGG 5 cut(s) 107, 134, 380, 932, 1139
Bme18I GGWCC 2 cut(s) 67, 314
BmgT120I GGNCC 2 cut(s) 67, 314
BmiI GGNNCC 5 cut(s) 28, 111, 467, 610, 890
BmrFI CCNGG 5 cut(s) 107, 134, 380, 932, 1139
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 946
BmuI ACTGGG 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 813
BpuEI CTTGAG 1 cut(s) 1066
BpuMI CCSGG 2 cut(s) 107, 134
BsaAI YACGTR 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 105, 379, 1138
BsaWI WCCGGW 1 cut(s) 584
Bsc4I CCNNNNNNNGG 7 cut(s) 39, 132, 311, 433, 724, 800, 898
Bse118I RCCGGY 1 cut(s) 468
Bse1I ACTGG 3 cut(s) 34, 559, 641
Bse3DI GCAATG 2 cut(s) 255, 1093
BseBI CCWGG 3 cut(s) 380, 932, 1139
BseDI CCNNGG 3 cut(s) 105, 379, 1138
BseGI GGATG 2 cut(s) 555, 809
BseLI CCNNNNNNNGG 7 cut(s) 39, 132, 311, 433, 724, 800, 898
BseMI GCAATG 2 cut(s) 255, 1093
BseMII CTCAG 4 cut(s) 437, 809, 1145, 1166
BseNI ACTGG 3 cut(s) 34, 559, 641
BseRI GAGGAG 1 cut(s) 816
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 1 cut(s) 1004
BseYI CCCAGC 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 930
BshNI GGYRCC 2 cut(s) 26, 465
BsiHKAI GWGCWC 1 cut(s) 592
BsiSI CCGG 4 cut(s) 107, 133, 469, 585
BslI CCNNNNNNNGG 7 cut(s) 39, 132, 311, 433, 724, 800, 898
BsmAI GTCTC 2 cut(s) 80, 253
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 930
Bso31I GGTCTC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 6 cut(s) 10, 373, 681, 839, 888, 1134
BspACI CCGC 8 cut(s) 5, 40, 52, 55, 114, 123, 496, 790
BspANI GGCC 1 cut(s) 930
BspCNI CTCAG 4 cut(s) 438, 808, 1144, 1165
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 5 cut(s) 28, 111, 467, 610, 890
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 3 cut(s) 883, 896, 1129
BspT107I GGYRCC 2 cut(s) 26, 465
BspTNI GGTCTC 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 255, 1093
BsrFI RCCGGY 1 cut(s) 468
BsrI ACTGG 3 cut(s) 34, 559, 641
BssAI RCCGGY 1 cut(s) 468
BssECI CCNNGG 3 cut(s) 105, 379, 1138
BssMI GATC 6 cut(s) 10, 373, 681, 839, 888, 1134
BssNI GRCGYC 1 cut(s) 89
Bst2UI CCWGG 3 cut(s) 380, 932, 1139
Bst4CI ACNGT 1 cut(s) 925
Bst6I CTCTTC 1 cut(s) 312
BstACI GRCGYC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 123, 1032, 1123
BstDEI CTNAG 5 cut(s) 446, 795, 858, 1131, 1152
BstEII GGTNACC 1 cut(s) 1058
BstF5I GGATG 2 cut(s) 555, 809
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 6 cut(s) 13, 376, 684, 842, 891, 1137
BstMAI GTCTC 2 cut(s) 80, 253
BstMBI GATC 6 cut(s) 10, 373, 681, 839, 888, 1134
BstMWI GCNNNNNNNGC 3 cut(s) 49, 122, 587
BstNI CCWGG 3 cut(s) 380, 932, 1139
BstNSI RCATGY 2 cut(s) 725, 1080
BstPI GGTNACC 1 cut(s) 1058
BstSCI CCNGG 5 cut(s) 105, 132, 378, 930, 1137
BstSLI GKGCMC 1 cut(s) 592
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 1004
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 2 cut(s) 888, 1134
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 2 cut(s) 888, 1134
BsuRI GGCC 1 cut(s) 930
BtsCI GGATG 2 cut(s) 555, 809
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 2 cut(s) 711, 881
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 123, 1032, 1123
CaiI CAGNNNCTG 1 cut(s) 1031
CfoI GCGC 1 cut(s) 667
Cfr10I RCCGGY 1 cut(s) 468
Cfr13I GGNCC 2 cut(s) 67, 314
CseI GACGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 466, 835
CviAII CATG 5 cut(s) 202, 413, 613, 722, 1077
CviQI GTAC 2 cut(s) 466, 835
DdeI CTNAG 5 cut(s) 446, 795, 858, 1131, 1152
DpnI GATC 6 cut(s) 12, 375, 683, 841, 890, 1136
DpnII GATC 6 cut(s) 10, 373, 681, 839, 888, 1134
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EciI GGCGGA 2 cut(s) 70, 779
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 67, 314
Eco47III AGCGCT 1 cut(s) 666
Eco57I CTGAAG 1 cut(s) 867
Eco91I GGTNACC 1 cut(s) 1058
EcoO65I GGTNACC 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 3 cut(s) 378, 930, 1137
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 5 cut(s) 205, 416, 616, 725, 1080
FatI CATG 5 cut(s) 201, 412, 612, 721, 1076
FauI CCCGC 2 cut(s) 121, 130
FbaI TGATCA 2 cut(s) 373, 681
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 4 cut(s) 6, 41, 53, 1018
FokI GGATG 2 cut(s) 542, 816
Fsp4HI GCNGC 4 cut(s) 6, 41, 53, 1018
FspBI CTAG 2 cut(s) 473, 651
GlaI GCGC 1 cut(s) 666
GluI GCNGC 4 cut(s) 6, 41, 53, 1018
GsaI CCCAGC 1 cut(s) 608
GsuI CTGGAG 1 cut(s) 813
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 1 cut(s) 930
HapII CCGG 4 cut(s) 107, 133, 469, 585
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 667
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 5 cut(s) 205, 416, 616, 725, 1080
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HincII GTYRAC 4 cut(s) 79, 226, 811, 1047
HindII GTYRAC 4 cut(s) 79, 226, 811, 1047
HinfI GANTC 2 cut(s) 448, 750
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 4 cut(s) 107, 133, 469, 585
HphI GGTGA 3 cut(s) 368, 664, 1070
Hpy166II GTNNAC 7 cut(s) 70, 79, 226, 327, 590, 811, 1047
Hpy188I TCNGA 5 cut(s) 622, 803, 847, 1027, 1134
Hpy188III TCNNGA 5 cut(s) 151, 522, 679, 830, 865
Hpy8I GTNNAC 7 cut(s) 70, 79, 226, 327, 590, 811, 1047
HpyCH4III ACNGT 1 cut(s) 925
HpyCH4IV ACGT 3 cut(s) 63, 263, 329
HpyCH4V TGCA 9 cut(s) 255, 402, 590, 879, 959, 1020, 1034, 1121, 1161
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 122, 587
HpyF3I CTNAG 5 cut(s) 446, 795, 858, 1131, 1152
HpySE526I ACGT 3 cut(s) 63, 263, 329
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 5 cut(s) 205, 416, 616, 725, 1080
HspAI GCGC 1 cut(s) 665
KpnI GGTACC 1 cut(s) 469
Ksp22I TGATCA 2 cut(s) 373, 681
KspAI GTTAAC 1 cut(s) 811
Kzo9I GATC 6 cut(s) 10, 373, 681, 839, 888, 1134
LmnI GCTCC 6 cut(s) 57, 115, 608, 662, 829, 1014
Lsp1109I GCAGC 1 cut(s) 1004
LweI GCATC 1 cut(s) 946
MaeI CTAG 2 cut(s) 473, 651
MaeII ACGT 3 cut(s) 63, 263, 329
MaeIII GTNAC 2 cut(s) 330, 1058
MalI GATC 6 cut(s) 12, 375, 683, 841, 890, 1136
MboI GATC 6 cut(s) 10, 373, 681, 839, 888, 1134
MboII GAAGA 4 cut(s) 299, 349, 537, 935
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 2 cut(s) 888, 1134
MhlI GDGCHC 1 cut(s) 592
MluCI AATT 5 cut(s) 403, 482, 697, 711, 1021
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 895
MnlI CCTC 7 cut(s) 105, 267, 315, 686, 740, 804, 837
MseI TTAA 5 cut(s) 294, 810, 852, 908, 1073
MslI CAYNNNNRTG 2 cut(s) 215, 1009
MspI CCGG 4 cut(s) 107, 133, 469, 585
MspR9I CCNGG 5 cut(s) 107, 134, 380, 932, 1139
MunI CAATTG 1 cut(s) 403
MvaI CCWGG 3 cut(s) 380, 932, 1139
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 3 cut(s) 49, 122, 587
NciI CCSGG 2 cut(s) 107, 134
NdeII GATC 6 cut(s) 10, 373, 681, 839, 888, 1134
NlaIII CATG 5 cut(s) 205, 416, 616, 725, 1080
NlaIV GGNNCC 5 cut(s) 28, 111, 467, 610, 890
NmuCI GTSAC 1 cut(s) 1058
NspI RCATGY 2 cut(s) 725, 1080
PciI ACATGT 1 cut(s) 721
PfeI GAWTC 1 cut(s) 750
PflMI CCANNNNNTGG 1 cut(s) 433
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 4 cut(s) 7, 42, 54, 1019
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
Ppu21I YACGTR 1 cut(s) 64
PscI ACATGT 1 cut(s) 721
Psp6I CCWGG 3 cut(s) 378, 930, 1137
PspEI GGTNACC 1 cut(s) 1058
PspFI CCCAGC 1 cut(s) 604
PspGI CCWGG 3 cut(s) 378, 930, 1137
PspN4I GGNNCC 5 cut(s) 28, 111, 467, 610, 890
PspPI GGNCC 2 cut(s) 67, 314
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 2 cut(s) 888, 1134
RsaI GTAC 2 cut(s) 467, 836
RsaNI GTAC 2 cut(s) 466, 835
RseI CAYNNNNRTG 2 cut(s) 215, 1009
SaqAI TTAA 5 cut(s) 294, 810, 852, 908, 1073
SatI GCNGC 4 cut(s) 6, 41, 53, 1018
Sau3AI GATC 6 cut(s) 10, 373, 681, 839, 888, 1134
Sau96I GGNCC 2 cut(s) 67, 314
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 5 cut(s) 107, 134, 380, 932, 1139
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 1 cut(s) 946
SinI GGWCC 2 cut(s) 67, 314
SmiMI CAYNNNNRTG 2 cut(s) 215, 1009
SmlI CTYRAG 1 cut(s) 1081
SmoI CTYRAG 1 cut(s) 1081
Sse9I AATT 5 cut(s) 403, 482, 697, 711, 1021
SsiI CCGC 8 cut(s) 5, 40, 52, 55, 114, 123, 496, 790
SspMI CTAG 2 cut(s) 473, 651
StyD4I CCNGG 5 cut(s) 105, 132, 378, 930, 1137
TaaI ACNGT 1 cut(s) 925
TaiI ACGT 3 cut(s) 66, 266, 332
TaqII GACCGA 1 cut(s) 235
TasI AATT 5 cut(s) 403, 482, 697, 711, 1021
TatI WGTACW 1 cut(s) 834
TauI GCSGC 3 cut(s) 8, 43, 55
TfiI GAWTC 1 cut(s) 750
Tru1I TTAA 5 cut(s) 294, 810, 852, 908, 1073
Tru9I TTAA 5 cut(s) 294, 810, 852, 908, 1073
TscAI CASTG 2 cut(s) 711, 881
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 1 cut(s) 1017
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 2 cut(s) 544, 978
TspRI CASTG 2 cut(s) 711, 881
Van91I CCANNNNNTGG 1 cut(s) 433
VneI GTGCAC 1 cut(s) 588
VpaK11BI GGWCC 2 cut(s) 67, 314
XapI RAATTY 2 cut(s) 482, 711
XceI RCATGY 2 cut(s) 725, 1080
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 2 cut(s) 473, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.