Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003480.1

Orthogroup ID

OG0011657

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 978

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003480.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 608 bp

atggcggcagatcactctcaatcgggcaccacccagttgcggctgaactcgcggcggagctacgtggtccaccccgttgacattgagacgccacctctaacttccccggctcccgccacgcccgccgtgttccgggaaatcaagcatttcaagaaatgggttgtctggttgatacctgcttttgttatcatcaataccatcatgtttatcatcactatgtatgtcaacaactgccccaagaactcggtctcttgcattgccacgttcttggggaggttctcgttccagccttttaaggagaaccctcttcttgggccatcatcgtctacgttacagaagatgggtgctttagatgtgaaaaaggtggttgatgatcaccaggggtggcttctcatcacttgcaattggctacatggtggagttttccatttgttggcgaatatgctgagtcttttggttattgggtaccggctagagcaagaatttggttttgtgcggattggtttgctatatgtcatctctggactcggtgggagtttgatgtcttcacttttcatccagtcaaatatctctgttggtgcttccggtgcactttttggattgctggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

203

Amino Acids

22.32

Weight (kDa)

9.3

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53780 AT3G53780 AT3G53780
fragaria_vesca	FvH4_6g13560
malus_domestica	MD04G1130000.v1.1 MD12G1143100.v1.1
prunus_persica	Prupe.6G256700_v2.0.a1
pyrus_communis	pycom04g11830 pycom12g13780
rosa_chinensis	RchiOBHm_Chr3g0466421
rosa_laevigata	RLG00000024575
rosa_multiflora	Rmu_co8379997.1_g000002 Rmu_sc0003332.1_g000027 Rmu_sc0003480.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414480
rosa_samantha	Rh3AG128300 Rh3BG149600 Rh3DG150300
rosa_wichuraiana	Rw3G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	2 cut(s)	26, 465
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	326
AccII	CGCG	1 cut(s)	52
AciI	CCGC	7 cut(s)	5, 40, 52, 55, 114, 123, 496
AcsI	RAATTY	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	4 cut(s)	39, 132, 311, 433
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	2 cut(s)	80, 253
Alw44I	GTGCAC	1 cut(s)	588
AoxI	GGCC	1 cut(s)	314
ApaLI	GTGCAC	1 cut(s)	588
ApoI	RAATTY	1 cut(s)	482
Asp718I	GGTACC	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	67, 314
AsuC2I	CCSGG	2 cut(s)	107, 134
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	2 cut(s)	29, 592
BanI	GGYRCC	2 cut(s)	26, 465
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	592
BccI	CCATC	3 cut(s)	206, 325, 334
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	2 cut(s)	107, 134
BcoDI	GTCTC	2 cut(s)	80, 253
BfaI	CTAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	6, 41, 53
BlsI	GCNGC	3 cut(s)	7, 42, 54
Bme1390I	CCNGG	3 cut(s)	107, 134, 380
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	67, 314
BmiI	GGNNCC	3 cut(s)	28, 111, 467
BmrFI	CCNGG	3 cut(s)	107, 134, 380
BmrI	ACTGGG	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	537
BpuMI	CCSGG	2 cut(s)	107, 134
BsaAI	YACGTR	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	105, 379
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 132, 311, 433
Bse118I	RCCGGY	1 cut(s)	468
Bse1I	ACTGG	2 cut(s)	34, 559
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	105, 379
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	4 cut(s)	39, 132, 311, 433
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	2 cut(s)	34, 559
BseSI	GKGCMC	2 cut(s)	29, 592
BseYI	CCCAGC	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	316
BshNI	GGYRCC	2 cut(s)	26, 465
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	4 cut(s)	107, 133, 469, 585
BslI	CCNNNNNNNGG	4 cut(s)	39, 132, 311, 433
BsmAI	GTCTC	2 cut(s)	80, 253
BsmBI	CGTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	316
Bso31I	GGTCTC	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	29, 592
Bsp143I	GATC	2 cut(s)	10, 373
BspACI	CCGC	7 cut(s)	5, 40, 52, 55, 114, 123, 496
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	28, 111, 467
BspMI	ACCTGC	1 cut(s)	184
BspT107I	GGYRCC	2 cut(s)	26, 465
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	34, 559
BssAI	RCCGGY	1 cut(s)	468
BssECI	CCNNGG	2 cut(s)	105, 379
BssMI	GATC	2 cut(s)	10, 373
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	555
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	13, 376
BstMAI	GTCTC	2 cut(s)	80, 253
BstMBI	GATC	2 cut(s)	10, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 122, 587
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	105, 132, 378
BstSLI	GKGCMC	2 cut(s)	29, 592
BstUI	CGCG	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	555
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	2 cut(s)	67, 314
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	2 cut(s)	202, 413
CviJI	RGCY	8 cut(s)	43, 60, 110, 289, 316, 388, 409, 472
CviKI_1	RGCY	8 cut(s)	43, 60, 110, 289, 316, 388, 409, 472
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	2 cut(s)	12, 375
DpnII	GATC	2 cut(s)	10, 373
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	2 cut(s)	205, 416
FaiI	YATR	7 cut(s)	203, 218, 222, 414, 443, 511, 513
FatI	CATG	2 cut(s)	201, 412
FauI	CCCGC	2 cut(s)	121, 130
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	6, 41, 53
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	3 cut(s)	6, 41, 53
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	3 cut(s)	6, 41, 53
GsaI	CCCAGC	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	4 cut(s)	107, 133, 469, 585
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	205, 416
HincII	GTYRAC	2 cut(s)	79, 226
HindII	GTYRAC	2 cut(s)	79, 226
HinfI	GANTC	2 cut(s)	448, 525
HpaII	CCGG	4 cut(s)	107, 133, 469, 585
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	5 cut(s)	70, 79, 226, 327, 590
Hpy188III	TCNNGA	2 cut(s)	151, 522
Hpy8I	GTNNAC	5 cut(s)	70, 79, 226, 327, 590
HpyCH4IV	ACGT	3 cut(s)	63, 263, 329
HpyCH4V	TGCA	3 cut(s)	255, 402, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 122, 587
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	3 cut(s)	63, 263, 329
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	205, 416
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	10, 373
LmnI	GCTCC	2 cut(s)	57, 115
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	3 cut(s)	63, 263, 329
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	2 cut(s)	12, 375
MboI	GATC	2 cut(s)	10, 373
MboII	GAAGA	3 cut(s)	299, 349, 537
MfeI	CAATTG	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	29, 592
MluCI	AATT	2 cut(s)	403, 482
MlyI	GAGTC	2 cut(s)	457, 519
MnlI	CCTC	3 cut(s)	105, 267, 315
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	4 cut(s)	107, 133, 469, 585
MspR9I	CCNGG	3 cut(s)	107, 134, 380
MunI	CAATTG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	49, 122, 587
NciI	CCSGG	2 cut(s)	107, 134
NdeII	GATC	2 cut(s)	10, 373
NlaIII	CATG	2 cut(s)	205, 416
NlaIV	GGNNCC	3 cut(s)	28, 111, 467
PflMI	CCANNNNNTGG	1 cut(s)	433
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	7, 42, 54
PleI	GAGTC	2 cut(s)	456, 519
PpsI	GAGTC	2 cut(s)	456, 519
Ppu21I	YACGTR	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	28, 111, 467
PspPI	GGNCC	2 cut(s)	67, 314
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	3 cut(s)	6, 41, 53
Sau3AI	GATC	2 cut(s)	10, 373
Sau96I	GGNCC	2 cut(s)	67, 314
SchI	GAGTC	2 cut(s)	457, 519
ScrFI	CCNGG	3 cut(s)	107, 134, 380
SduI	GDGCHC	2 cut(s)	29, 592
SetI	ASST	8 cut(s)	62, 66, 97, 178, 266, 278, 332, 366
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	403, 482
SsiI	CCGC	7 cut(s)	5, 40, 52, 55, 114, 123, 496
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	105, 132, 378
TaiI	ACGT	3 cut(s)	66, 266, 332
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	2 cut(s)	403, 482
TauI	GCSGC	3 cut(s)	8, 43, 55
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	544
Van91I	CCANNNNNTGG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.