FvH4_6g13560

Rhomboid-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
8216662 .. 8220135
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13560.t1

Sequence Viewer

Length: 1164 bp
ATGGCGGCAGAGTCTCAATCAGGCGCCCAGCCGCGGCTCAACTCCAGGCGCCACTACAACGTGGTGCACCCTGTTGACATCGAGACACCTCCTCTGACGTCACCTGCTCCGGCCACTCCCACCGTGTTCCTGGAAGTCAAGCATTTCAAGAAATGGGTGGTGTGGTTGATACCTACCTTTGTTATCATCAATGTGATCATGTTTGTTATCACTATGTATGTCAACAACTGCCCCAAGAACTCGGTTTCTTGCATTGCCACGTTTTTGGGGAGGTTCTCGTTTCAGCCTTTTAAGGAGAACCCTCTTCTTGGGCCTTCATCTTCTGCGTTGCAGAAAATGGGTGCTTTGGATGTGAAGAAGGTTGTTGATGATCACCAGGGGTGGCTTCTCATTACTTGCAATTGGCTACATGGTGGTGTTTTCCATTTACTTGCTAACATGTTGAGTCTTTTGGTTATTGGGTATCGGCTAGAGCAAGAATTCGGCTTTGTGCGTATTGGGTTGCTATATGTCATCTCAGGACTAGGTGGGAGTTTGATGTCTTCACTTTTTATCCAGTCAAATATCTCTGTTGGTGCTTCGGGTGCACTTTTTGGATTGCTGGGAGCCATGCTGTCTGAGCTTATCACTAACTGGACAATATATGCTAGTAAGTTTGGAGCACTTTTCACCCTCCTGATCATCATTACGATCAATTTAGCAGTGGGAATCCTCCCACATGTGGACAACTTTGCTCACATTGGAGGATTCCTTTCGGGATTCTTTCTTGGGTTTGTGTTTCTTATCCGTCCTCAGTTCGGATGGGTTAACCAAAGATATGCTCCTCCGGAGTTCAGAGCATCTGAAGTTAAATCAAAGTTCAAGACCTATCAGTGCATATTTTGGATCCTTTCTCTGGTTATTTTGATTGTTGGATTTACTGTTGGCCTGGTTATGCTTATCCGGGGAGTTGATGCAAATAAACATTGTTCTTGGTGTCATTATTTGTCTTGTGTCCCAACATCAAAATGGAGCTGCCGGTCAGAGCCTGCATACTGCTCGTCAACCCAGACAGGTGACCAGCTCTTTTTAACATGCTCGAGCAATGGAAAGAATGGCACATATACGTATGCAAATGCAAGCAGCTCTCAGATCCAGGGATTGTGTTCTCAGCTTTGCAGTTGA

Protein Analysis

388

Amino Acids

42.69

Weight (kDa)

8.97

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 125 - 261 4e-40 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011657)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
AatII GACGTC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 2 cut(s) 23, 48
AccII CGCG 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 3 cut(s) 5, 32, 34
AclWI GGATC 3 cut(s) 880, 893, 1126
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 3 cut(s) 24, 49, 98
AfiI CCNNNNNNNGG 5 cut(s) 33, 308, 721, 797, 895
AflIII ACRYGT 2 cut(s) 438, 718
AgsI TTSAA 2 cut(s) 148, 862
AjnI CCWGG 5 cut(s) 44, 129, 375, 927, 1134
AluBI AGCT 5 cut(s) 622, 1014, 1063, 1125, 1153
AluI AGCT 5 cut(s) 622, 1014, 1063, 1125, 1153
Alw21I GWGCWC 3 cut(s) 69, 589, 664
Alw26I GTCTC 2 cut(s) 18, 77
Alw44I GTGCAC 2 cut(s) 65, 585
AlwI GGATC 3 cut(s) 880, 893, 1126
AlwNI CAGNNNCTG 1 cut(s) 1028
Ama87I CYCGRG 1 cut(s) 1078
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 3 cut(s) 111, 311, 925
ApaLI GTGCAC 2 cut(s) 65, 585
ApeKI GCWGC 2 cut(s) 1014, 1122
ApoI RAATTY 1 cut(s) 479
AspLEI GCGC 2 cut(s) 26, 51
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 1 cut(s) 944
AsuHPI GGTGA 4 cut(s) 93, 365, 661, 1067
AvaI CYCGRG 1 cut(s) 1078
BaeGI GKGCMC 2 cut(s) 69, 589
BamHI GGATCC 1 cut(s) 885
BanI GGYRCC 2 cut(s) 23, 48
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 3 cut(s) 69, 589, 664
BbvI GCAGC 2 cut(s) 1001, 1134
BccI CCATC 1 cut(s) 795
BcgI CGANNNNNNTGC 2 cut(s) 1020, 1054
BciT130I CCWGG 5 cut(s) 46, 131, 377, 929, 1136
BclI TGATCA 3 cut(s) 195, 370, 678
BcnI CCSGG 1 cut(s) 944
BcoDI GTCTC 2 cut(s) 18, 77
BfaI CTAG 3 cut(s) 470, 524, 648
BfoI RGCGCY 2 cut(s) 27, 52
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 5 cut(s) 6, 32, 35, 1015, 1123
BlsI GCNGC 5 cut(s) 7, 33, 36, 1016, 1124
Bme1390I CCNGG 6 cut(s) 46, 131, 377, 929, 944, 1136
BmeT110I CYCGRG 1 cut(s) 1078
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 4 cut(s) 25, 50, 607, 887
BmrFI CCNGG 6 cut(s) 46, 131, 377, 929, 944, 1136
BmsI GCATC 2 cut(s) 848, 943
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 944
BsaAI YACGTR 1 cut(s) 1107
BsaHI GRCGYC 3 cut(s) 24, 49, 98
BsaJI CCNNGG 4 cut(s) 32, 376, 943, 1135
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 308, 721, 797, 895
Bse118I RCCGGY 1 cut(s) 1017
Bse1I ACTGG 2 cut(s) 556, 638
Bse3DI GCAATG 2 cut(s) 252, 1090
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 5 cut(s) 46, 131, 377, 929, 1136
BseDI CCNNGG 4 cut(s) 32, 376, 943, 1135
BseGI GGATG 2 cut(s) 355, 806
BseLI CCNNNNNNNGG 5 cut(s) 33, 308, 721, 797, 895
BseMI GCAATG 2 cut(s) 252, 1090
BseMII CTCAG 5 cut(s) 531, 609, 806, 1142, 1163
BseNI ACTGG 2 cut(s) 556, 638
BseRI GAGGAG 2 cut(s) 81, 813
BseSI GKGCMC 2 cut(s) 69, 589
BseXI GCAGC 2 cut(s) 1001, 1134
BseYI CCCAGC 2 cut(s) 27, 601
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 3 cut(s) 113, 313, 927
BshNI GGYRCC 2 cut(s) 23, 48
BsiHKAI GWGCWC 3 cut(s) 69, 589, 664
BsiHKCI CYCGRG 1 cut(s) 1078
BsiSI CCGG 4 cut(s) 110, 827, 943, 1018
BslFI GGGAC 1 cut(s) 980
BslI CCNNNNNNNGG 5 cut(s) 33, 308, 721, 797, 895
BsmAI GTCTC 2 cut(s) 18, 77
BsmFI GGGAC 1 cut(s) 980
BsnI GGCC 3 cut(s) 113, 313, 927
BsoBI CYCGRG 1 cut(s) 1078
Bsp1286I GDGCHC 3 cut(s) 69, 589, 664
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 6 cut(s) 195, 370, 678, 690, 885, 1131
BspACI CCGC 3 cut(s) 5, 32, 34
BspANI GGCC 3 cut(s) 113, 313, 927
BspCNI CTCAG 5 cut(s) 530, 610, 805, 1141, 1162
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 4 cut(s) 25, 50, 607, 887
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 3 cut(s) 880, 893, 1126
BspT107I GGYRCC 2 cut(s) 23, 48
BsrDI GCAATG 2 cut(s) 252, 1090
BsrFI RCCGGY 1 cut(s) 1017
BsrI ACTGG 2 cut(s) 556, 638
BssAI RCCGGY 1 cut(s) 1017
BssECI CCNNGG 4 cut(s) 32, 376, 943, 1135
BssMI GATC 6 cut(s) 195, 370, 678, 690, 885, 1131
BssNI GRCGYC 3 cut(s) 24, 49, 98
Bst2UI CCWGG 5 cut(s) 46, 131, 377, 929, 1136
Bst4CI ACNGT 2 cut(s) 124, 922
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 3 cut(s) 24, 49, 98
BstBAI YACGTR 1 cut(s) 1107
BstC8I GCNNGC 2 cut(s) 1029, 1120
BstDEI CTNAG 5 cut(s) 517, 618, 792, 1128, 1149
BstDSI CCRYGG 1 cut(s) 32
BstEII GGTNACC 1 cut(s) 1055
BstF5I GGATG 2 cut(s) 355, 806
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 2 cut(s) 27, 52
BstHHI GCGC 2 cut(s) 26, 51
BstKTI GATC 6 cut(s) 198, 373, 681, 693, 888, 1134
BstMAI GTCTC 2 cut(s) 18, 77
BstMBI GATC 6 cut(s) 195, 370, 678, 690, 885, 1131
BstMWI GCNNNNNNNGC 2 cut(s) 584, 619
BstNI CCWGG 5 cut(s) 46, 131, 377, 929, 1136
BstNSI RCATGY 3 cut(s) 442, 722, 1077
BstPI GGTNACC 1 cut(s) 1055
BstSCI CCNGG 6 cut(s) 44, 129, 375, 927, 942, 1134
BstSLI GKGCMC 2 cut(s) 69, 589
BstSNI TACGTA 1 cut(s) 1107
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 1001, 1134
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 885, 1131
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 2 cut(s) 885, 1131
BsuRI GGCC 3 cut(s) 113, 313, 927
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 355, 806
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 708, 878
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 1029, 1120
CaiI CAGNNNCTG 1 cut(s) 1028
CfoI GCGC 2 cut(s) 26, 51
Cfr10I RCCGGY 1 cut(s) 1017
Cfr13I GGNCC 1 cut(s) 311
Cfr42I CCGCGG 1 cut(s) 35
CviAII CATG 6 cut(s) 199, 410, 439, 610, 719, 1074
DdeI CTNAG 5 cut(s) 517, 618, 792, 1128, 1149
DinI GGCGCC 2 cut(s) 25, 50
DpnI GATC 6 cut(s) 197, 372, 680, 692, 887, 1133
DpnII GATC 6 cut(s) 195, 370, 678, 690, 885, 1131
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco105I TACGTA 1 cut(s) 1107
Eco57I CTGAAG 1 cut(s) 864
Eco88I CYCGRG 1 cut(s) 1078
Eco91I GGTNACC 1 cut(s) 1055
EcoO65I GGTNACC 1 cut(s) 1055
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 5 cut(s) 44, 129, 375, 927, 1134
EgeI GGCGCC 2 cut(s) 25, 50
EheI GGCGCC 2 cut(s) 25, 50
FaeI CATG 6 cut(s) 202, 413, 442, 613, 722, 1077
FaqI GGGAC 1 cut(s) 980
FatI CATG 6 cut(s) 198, 409, 438, 609, 718, 1073
FbaI TGATCA 3 cut(s) 195, 370, 678
Fnu4HI GCNGC 5 cut(s) 6, 32, 35, 1015, 1123
FokI GGATG 2 cut(s) 362, 813
Fsp4HI GCNGC 5 cut(s) 6, 32, 35, 1015, 1123
FspBI CTAG 3 cut(s) 470, 524, 648
GlaI GCGC 2 cut(s) 25, 50
GluI GCNGC 5 cut(s) 6, 32, 35, 1015, 1123
GsaI CCCAGC 2 cut(s) 31, 605
GsuI CTGGAG 1 cut(s) 28
HaeII RGCGCY 2 cut(s) 27, 52
HaeIII GGCC 3 cut(s) 113, 313, 927
HapII CCGG 4 cut(s) 110, 827, 943, 1018
HhaI GCGC 2 cut(s) 26, 51
Hin1I GRCGYC 3 cut(s) 24, 49, 98
Hin1II CATG 6 cut(s) 202, 413, 442, 613, 722, 1077
Hin6I GCGC 2 cut(s) 24, 49
HinP1I GCGC 2 cut(s) 24, 49
HincII GTYRAC 4 cut(s) 76, 223, 808, 1044
HindII GTYRAC 4 cut(s) 76, 223, 808, 1044
HinfI GANTC 5 cut(s) 11, 445, 708, 747, 759
HpaI GTTAAC 1 cut(s) 808
HpaII CCGG 4 cut(s) 110, 827, 943, 1018
HphI GGTGA 4 cut(s) 93, 365, 661, 1067
Hpy166II GTNNAC 7 cut(s) 67, 76, 223, 587, 724, 808, 1044
Hpy188I TCNGA 7 cut(s) 96, 619, 800, 836, 844, 1024, 1131
Hpy188III TCNNGA 7 cut(s) 82, 148, 519, 676, 756, 827, 862
Hpy8I GTNNAC 7 cut(s) 67, 76, 223, 587, 724, 808, 1044
HpyAV CCTTC 2 cut(s) 324, 352
HpyCH4III ACNGT 2 cut(s) 124, 922
HpyCH4IV ACGT 4 cut(s) 60, 98, 260, 1106
HpyF10VI GCNNNNNNNGC 2 cut(s) 584, 619
HpyF3I CTNAG 5 cut(s) 517, 618, 792, 1128, 1149
HpySE526I ACGT 4 cut(s) 60, 98, 260, 1106
Hsp92I GRCGYC 3 cut(s) 24, 49, 98
Hsp92II CATG 6 cut(s) 202, 413, 442, 613, 722, 1077
HspAI GCGC 2 cut(s) 24, 49
KasI GGCGCC 2 cut(s) 23, 48
Kpn2I TCCGGA 1 cut(s) 826
Ksp22I TGATCA 3 cut(s) 195, 370, 678
KspAI GTTAAC 1 cut(s) 808
KspI CCGCGG 1 cut(s) 35
Kzo9I GATC 6 cut(s) 195, 370, 678, 690, 885, 1131
LmnI GCTCC 5 cut(s) 112, 605, 659, 826, 1011
Lsp1109I GCAGC 2 cut(s) 1001, 1134
LweI GCATC 2 cut(s) 848, 943
MaeI CTAG 3 cut(s) 470, 524, 648
MaeII ACGT 4 cut(s) 60, 98, 260, 1106
MaeIII GTNAC 2 cut(s) 99, 1055
MalI GATC 6 cut(s) 197, 372, 680, 692, 887, 1133
MboI GATC 6 cut(s) 195, 370, 678, 690, 885, 1131
MboII GAAGA 4 cut(s) 296, 312, 367, 534
MfeI CAATTG 1 cut(s) 400
MflI RGATCY 2 cut(s) 885, 1131
MhlI GDGCHC 3 cut(s) 69, 589, 664
MluCI AATT 3 cut(s) 400, 479, 694
Mly113I GGCGCC 2 cut(s) 24, 49
MlyI GAGTC 2 cut(s) 20, 454
MmeI TCCRAC 1 cut(s) 892
MnlI CCTC 9 cut(s) 99, 102, 264, 312, 683, 722, 737, 801, 834
MroI TCCGGA 1 cut(s) 826
MseI TTAA 4 cut(s) 291, 807, 849, 1070
MslI CAYNNNNRTG 3 cut(s) 191, 414, 1006
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 4 cut(s) 110, 827, 943, 1018
MspR9I CCNGG 6 cut(s) 46, 131, 377, 929, 944, 1136
MunI CAATTG 1 cut(s) 400
MvaI CCWGG 5 cut(s) 46, 131, 377, 929, 1136
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 584, 619
NarI GGCGCC 2 cut(s) 24, 49
NciI CCSGG 1 cut(s) 944
NdeII GATC 6 cut(s) 195, 370, 678, 690, 885, 1131
NlaIII CATG 6 cut(s) 202, 413, 442, 613, 722, 1077
NlaIV GGNNCC 4 cut(s) 25, 50, 607, 887
NmuCI GTSAC 2 cut(s) 99, 1055
NspI RCATGY 3 cut(s) 442, 722, 1077
PaeR7I CTCGAG 1 cut(s) 1078
PaqCI CACCTGC 1 cut(s) 112
PciI ACATGT 2 cut(s) 438, 718
PfeI GAWTC 3 cut(s) 708, 747, 759
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 5 cut(s) 7, 33, 36, 1016, 1124
PleI GAGTC 2 cut(s) 19, 453
PluTI GGCGCC 2 cut(s) 27, 52
PpsI GAGTC 2 cut(s) 19, 453
Ppu21I YACGTR 1 cut(s) 1107
PscI ACATGT 2 cut(s) 438, 718
Psp6I CCWGG 5 cut(s) 44, 129, 375, 927, 1134
PspEI GGTNACC 1 cut(s) 1055
PspFI CCCAGC 2 cut(s) 27, 601
PspGI CCWGG 5 cut(s) 44, 129, 375, 927, 1134
PspN4I GGNNCC 4 cut(s) 25, 50, 607, 887
PspPI GGNCC 1 cut(s) 311
PspXI VCTCGAGB 1 cut(s) 1078
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 2 cut(s) 885, 1131
RseI CAYNNNNRTG 3 cut(s) 191, 414, 1006
SacII CCGCGG 1 cut(s) 35
SaqAI TTAA 4 cut(s) 291, 807, 849, 1070
SatI GCNGC 5 cut(s) 6, 32, 35, 1015, 1123
Sau3AI GATC 6 cut(s) 195, 370, 678, 690, 885, 1131
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 2 cut(s) 20, 454
ScrFI CCNGG 6 cut(s) 46, 131, 377, 929, 944, 1136
SduI GDGCHC 3 cut(s) 69, 589, 664
SfaNI GCATC 2 cut(s) 848, 943
SfoI GGCGCC 2 cut(s) 25, 50
Sfr274I CTCGAG 1 cut(s) 1078
Sfr303I CCGCGG 1 cut(s) 35
SgrBI CCGCGG 1 cut(s) 35
SlaI CTCGAG 1 cut(s) 1078
SmiMI CAYNNNNRTG 3 cut(s) 191, 414, 1006
SmlI CTYRAG 1 cut(s) 1078
SmoI CTYRAG 1 cut(s) 1078
SnaBI TACGTA 1 cut(s) 1107
Sse9I AATT 3 cut(s) 400, 479, 694
SsiI CCGC 3 cut(s) 5, 32, 34
SspDI GGCGCC 2 cut(s) 23, 48
SspMI CTAG 3 cut(s) 470, 524, 648
StyD4I CCNGG 6 cut(s) 44, 129, 375, 927, 942, 1134
TaaI ACNGT 2 cut(s) 124, 922
TaiI ACGT 4 cut(s) 63, 101, 263, 1109
TaqI TCGA 2 cut(s) 81, 1079
TasI AATT 3 cut(s) 400, 479, 694
TauI GCSGC 3 cut(s) 8, 34, 37
TfiI GAWTC 3 cut(s) 708, 747, 759
Tru1I TTAA 4 cut(s) 291, 807, 849, 1070
Tru9I TTAA 4 cut(s) 291, 807, 849, 1070
TscAI CASTG 2 cut(s) 708, 878
TseFI GTSAC 2 cut(s) 99, 1055
TseI GCWGC 2 cut(s) 1014, 1122
Tsp45I GTSAC 2 cut(s) 99, 1055
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 2 cut(s) 708, 878
VneI GTGCAC 2 cut(s) 65, 585
XapI RAATTY 1 cut(s) 479
XceI RCATGY 3 cut(s) 442, 722, 1077
XcmI CCANNNNNNNNNTGG 2 cut(s) 127, 1005
XhoI CTCGAG 1 cut(s) 1078
XspI CTAG 3 cut(s) 470, 524, 648
ZraI GACGTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.