Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011657

Physical Location & Seq

Genomic Coordinates Reverse (-)

24945550 .. 24948673

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G256700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCGGCAGAGCCTGCATCTTCAGGACCCCAAATGAGAGTGAACTCCAGGCGGAGTTACAACGTGGTGCACCCAGTGGACATAGAGACACCTCCACTAGCTTCTCCAGCTCCAGCTTCATCCCCTGATGTGTATCGAGAGGTCAAGCATTTCAAGAAGTGGGTTGTTTGGCTGATACCTGTTTTTGTTGTTGCCAATGTTATTATGTTCATCATCACCATGTATGTCAACAACTGCCCTAAGAACTCGATCAATTGCATTGCCACGTTCTTGGGTAGGTTCTCCTTTCAGCCGTTTAAGGAGAACCCTCTTCTTGGACCATCATCTTCCACGCTACAGAAGATGGGGGCTTTAGATGTAAATAAGGTGGTTCACAGACACCAGGGGTGGCTTCTCATCACTTGCAATTGGTTACATGGTGGTGTTTTCCATTTATTGGCTAATATGTTGAGCCTTTTGGTTATTGGGTATCGGCTAGAGCAAGAATTTGGCTTCGTCCGGATTGGGTTGATATATGTCATCTCTGGACTTGGTGGGAGTTTGTTGTCATCGCTTTTCATCCAAACAAACATCTCTGTTGGTGCTTCTGGTGCTCTTTTTGGATTGCTGGGAGCCATGCTTTCTGAACTTGTCACTAATTGGACAATATATGCTAGTAAGTTTGGAGCACTTTTCACCCTCCTGATTGTCATAGCAATCAATTTGGCAGTGGGAATTCTCCCACACGTTGACAACTTTGCTCACATTGGAGGATTTCTTTCGGGTTTTTTTCTCGGGTTTGTATTTCTTATCCGCCCCCAGTTCGGATGGGTTAACCAAAGATATGGTCCTCCAGGATACGCATCATCTGAAGCTAAATCGAAGTTCAAGACCTATCAGTGCATTTTGTGGGTCCTTTCTGTGATCATTTTAATTGTTGGGTTTACCGTTGGCCTGGTTATGCTTCTTCGGGGAGTTGATGCAAATAAACATTGCTCTTGGTGTCATTATTTGTCCTGTGTCCCTACTTCAAGATGGAGTTGCAAGACAGAGCCTGCATACTGCATGTCAAGCCAGACGGGCAATCAGCTCTTGTTAACATGCTCAAGCAATGGTAAGAACGGCACGTATACATTGGCAAATGCAAGCAGTTCTCAGATCCAGGGGCTGTGTTCTCAGCTTTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

390

Amino Acids

42.6

Weight (kDa)

9.21

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53780 AT3G53780 AT3G53780
fragaria_vesca	FvH4_6g13560
malus_domestica	MD04G1130000.v1.1 MD12G1143100.v1.1
prunus_persica	Prupe.6G256700_v2.0.a1
pyrus_communis	pycom04g11830 pycom12g13780
rosa_chinensis	RchiOBHm_Chr3g0466421
rosa_laevigata	RLG00000024575
rosa_multiflora	Rmu_co8379997.1_g000002 Rmu_sc0003332.1_g000027 Rmu_sc0003480.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414480
rosa_samantha	Rh3AG128300 Rh3BG149600 Rh3DG150300
rosa_wichuraiana	Rw3G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	1109
AccIII	TCCGGA	1 cut(s)	498
AciI	CCGC	3 cut(s)	5, 52, 793
AclWI	GGATC	1 cut(s)	1132
AcsI	RAATTY	2 cut(s)	485, 714
AcuI	CTGAAG	2 cut(s)	6, 870
AdeI	CACNNNGTG	1 cut(s)	76
AfiI	CCNNNNNNNGG	3 cut(s)	314, 436, 803
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	3 cut(s)	154, 868, 1011
AjnI	CCWGG	5 cut(s)	47, 381, 832, 933, 1140
AluBI	AGCT	6 cut(s)	101, 110, 116, 854, 1069, 1159
AluI	AGCT	6 cut(s)	101, 110, 116, 854, 1069, 1159
Alw21I	GWGCWC	3 cut(s)	72, 595, 670
Alw26I	GTCTC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	1132
AlwNI	CAGNNNCTG	3 cut(s)	14, 1034, 1147
Ama87I	CYCGRG	1 cut(s)	773
Aor13HI	TCCGGA	1 cut(s)	498
AoxI	GGCC	1 cut(s)	931
ApaLI	GTGCAC	1 cut(s)	68
ApoI	RAATTY	2 cut(s)	485, 714
ArsI	GACNNNNNNTTYG	2 cut(s)	811, 843
AspS9I	GGNCC	4 cut(s)	26, 317, 827, 892
AsuHPI	GGTGA	2 cut(s)	208, 667
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	4 cut(s)	26, 317, 827, 892
BaeGI	GKGCMC	1 cut(s)	72
Bbv12I	GWGCWC	3 cut(s)	72, 595, 670
BccI	CCATC	4 cut(s)	328, 337, 801, 1008
BceAI	ACGGC	2 cut(s)	277, 1117
BciT130I	CCWGG	5 cut(s)	49, 383, 834, 935, 1142
BciVI	GTATCC	1 cut(s)	830
BclI	TGATCA	1 cut(s)	903
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	3 cut(s)	98, 476, 654
BfmI	CTRYAG	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	830
BglI	GCCNNNNNGGC	1 cut(s)	1059
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	5 cut(s)	49, 383, 834, 935, 1142
Bme18I	GGWCC	4 cut(s)	26, 317, 827, 892
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	4 cut(s)	26, 317, 827, 892
BmiI	GGNNCC	3 cut(s)	28, 613, 893
BmrFI	CCNGG	5 cut(s)	49, 383, 834, 935, 1142
BmrI	ACTGGG	2 cut(s)	68, 793
BmsI	GCATC	3 cut(s)	26, 851, 949
BmuI	ACTGGG	2 cut(s)	68, 793
BpmI	CTGGAG	4 cut(s)	31, 90, 96, 816
BpuEI	CTTGAG	1 cut(s)	1069
BsaAI	YACGTR	1 cut(s)	1107
BsaBI	GATNNNNATC	2 cut(s)	132, 841
BsaJI	CCNNGG	2 cut(s)	382, 1141
BsaWI	WCCGGW	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 436, 803
Bse1I	ACTGG	2 cut(s)	74, 799
Bse3DI	GCAATG	3 cut(s)	258, 970, 1096
Bse8I	GATNNNNATC	2 cut(s)	132, 841
BseAI	TCCGGA	1 cut(s)	498
BseBI	CCWGG	5 cut(s)	49, 383, 834, 935, 1142
BseDI	CCNNGG	2 cut(s)	382, 1141
BseGI	GGATG	3 cut(s)	119, 558, 812
BseJI	GATNNNNATC	2 cut(s)	132, 841
BseLI	CCNNNNNNNGG	3 cut(s)	314, 436, 803
BseMI	GCAATG	3 cut(s)	258, 970, 1096
BseMII	CTCAG	2 cut(s)	1148, 1169
BseNI	ACTGG	2 cut(s)	74, 799
BseSI	GKGCMC	1 cut(s)	72
BseYI	CCCAGC	1 cut(s)	607
BshFI	GGCC	1 cut(s)	933
BsiHKAI	GWGCWC	3 cut(s)	72, 595, 670
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	1 cut(s)	499
BslFI	GGGAC	1 cut(s)	986
BslI	CCNNNNNNNGG	3 cut(s)	314, 436, 803
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	986
BsnI	GGCC	1 cut(s)	933
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	3 cut(s)	72, 595, 670
Bsp13I	TCCGGA	1 cut(s)	498
Bsp143I	GATC	3 cut(s)	249, 903, 1137
BspACI	CCGC	3 cut(s)	5, 52, 793
BspANI	GGCC	1 cut(s)	933
BspCNI	CTCAG	2 cut(s)	1147, 1168
BspEI	TCCGGA	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	28, 613, 893
BspPI	GGATC	1 cut(s)	1132
BsrDI	GCAATG	3 cut(s)	258, 970, 1096
BsrI	ACTGG	2 cut(s)	74, 799
BssECI	CCNNGG	2 cut(s)	382, 1141
BssMI	GATC	3 cut(s)	249, 903, 1137
BssNAI	GTATAC	1 cut(s)	1110
Bst1107I	GTATAC	1 cut(s)	1110
Bst2UI	CCWGG	5 cut(s)	49, 383, 834, 935, 1142
Bst4CI	ACNGT	1 cut(s)	928
Bst6I	CTCTTC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	1107
BstC8I	GCNNGC	3 cut(s)	15, 1035, 1126
BstDEI	CTNAG	3 cut(s)	240, 1134, 1155
BstF5I	GGATG	3 cut(s)	119, 558, 812
BstKTI	GATC	3 cut(s)	252, 906, 1140
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	249, 903, 1137
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 107, 590, 1050, 1059
BstNI	CCWGG	5 cut(s)	49, 383, 834, 935, 1142
BstNSI	RCATGY	2 cut(s)	1048, 1083
BstSCI	CCNGG	5 cut(s)	47, 381, 832, 933, 1140
BstSFI	CTRYAG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	1137
BstXI	CCANNNNNNTGG	2 cut(s)	271, 824
BstYI	RGATCY	1 cut(s)	1137
BstZ17I	GTATAC	1 cut(s)	1110
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	1 cut(s)	933
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	3 cut(s)	119, 558, 812
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	3 cut(s)	81, 714, 884
Cac8I	GCNNGC	3 cut(s)	15, 1035, 1126
CaiI	CAGNNNCTG	3 cut(s)	14, 1034, 1147
Cfr13I	GGNCC	4 cut(s)	26, 317, 827, 892
CviAII	CATG	5 cut(s)	220, 416, 616, 1045, 1080
DdeI	CTNAG	3 cut(s)	240, 1134, 1155
DpnI	GATC	3 cut(s)	251, 905, 1139
DpnII	GATC	3 cut(s)	249, 903, 1137
DraIII	CACNNNGTG	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	2 cut(s)	67, 782
Eco47I	GGWCC	4 cut(s)	26, 317, 827, 892
Eco57I	CTGAAG	2 cut(s)	6, 870
Eco88I	CYCGRG	1 cut(s)	773
EcoO109I	RGGNCCY	2 cut(s)	26, 892
EcoRI	GAATTC	1 cut(s)	714
EcoRII	CCWGG	5 cut(s)	47, 381, 832, 933, 1140
FaeI	CATG	5 cut(s)	223, 419, 619, 1048, 1083
FaqI	GGGAC	1 cut(s)	986
FatI	CATG	5 cut(s)	219, 415, 615, 1044, 1079
FbaI	TGATCA	1 cut(s)	903
FblI	GTMKAC	1 cut(s)	1109
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	106, 545, 819
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	98, 476, 654
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	4 cut(s)	31, 90, 96, 816
HaeIII	GGCC	1 cut(s)	933
HapII	CCGG	1 cut(s)	499
Hin1II	CATG	5 cut(s)	223, 419, 619, 1048, 1083
HincII	GTYRAC	4 cut(s)	229, 730, 814, 1077
HindII	GTYRAC	4 cut(s)	229, 730, 814, 1077
HpaI	GTTAAC	2 cut(s)	814, 1077
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	2 cut(s)	208, 667
Hpy188I	TCNGA	4 cut(s)	625, 806, 850, 1137
Hpy188III	TCNNGA	8 cut(s)	24, 137, 154, 499, 525, 682, 868, 1011
HpyCH4III	ACNGT	1 cut(s)	928
HpyCH4IV	ACGT	4 cut(s)	63, 266, 726, 1106
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 107, 590, 1050, 1059
HpyF3I	CTNAG	3 cut(s)	240, 1134, 1155
HpySE526I	ACGT	4 cut(s)	63, 266, 726, 1106
Hsp92II	CATG	5 cut(s)	223, 419, 619, 1048, 1083
Kpn2I	TCCGGA	1 cut(s)	498
Ksp22I	TGATCA	1 cut(s)	903
KspAI	GTTAAC	2 cut(s)	814, 1077
Kzo9I	GATC	3 cut(s)	249, 903, 1137
LmnI	GCTCC	3 cut(s)	115, 611, 665
LweI	GCATC	3 cut(s)	26, 851, 949
MaeI	CTAG	3 cut(s)	98, 476, 654
MaeII	ACGT	4 cut(s)	63, 266, 726, 1106
MaeIII	GTNAC	3 cut(s)	56, 411, 631
MalI	GATC	3 cut(s)	251, 905, 1139
MboI	GATC	3 cut(s)	249, 903, 1137
MboII	GAAGA	5 cut(s)	12, 302, 318, 352, 938
MfeI	CAATTG	2 cut(s)	253, 406
MflI	RGATCY	1 cut(s)	1137
MhlI	GDGCHC	3 cut(s)	72, 595, 670
MluCI	AATT	7 cut(s)	253, 406, 485, 637, 700, 714, 912
MnlI	CCTC	6 cut(s)	102, 133, 318, 689, 743, 840
MroI	TCCGGA	1 cut(s)	498
MseI	TTAA	4 cut(s)	297, 813, 911, 1076
MslI	CAYNNNNRTG	2 cut(s)	218, 420
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	5 cut(s)	49, 383, 834, 935, 1142
MunI	CAATTG	2 cut(s)	253, 406
MvaI	CCWGG	5 cut(s)	49, 383, 834, 935, 1142
MwoI	GCNNNNNNNGC	5 cut(s)	14, 107, 590, 1050, 1059
NdeII	GATC	3 cut(s)	249, 903, 1137
NlaIII	CATG	5 cut(s)	223, 419, 619, 1048, 1083
NlaIV	GGNNCC	3 cut(s)	28, 613, 893
NmuCI	GTSAC	1 cut(s)	631
NspI	RCATGY	2 cut(s)	1048, 1083
PflMI	CCANNNNNTGG	1 cut(s)	436
PfoI	TCCNGGA	1 cut(s)	832
PkrI	GCNGC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	1107
PpuMI	RGGWCCY	2 cut(s)	26, 892
Psp5II	RGGWCCY	2 cut(s)	26, 892
Psp6I	CCWGG	5 cut(s)	47, 381, 832, 933, 1140
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	5 cut(s)	47, 381, 832, 933, 1140
PspN4I	GGNNCC	3 cut(s)	28, 613, 893
PspPI	GGNCC	4 cut(s)	26, 317, 827, 892
PspPPI	RGGWCCY	2 cut(s)	26, 892
PstNI	CAGNNNCTG	3 cut(s)	14, 1034, 1147
PsuI	RGATCY	1 cut(s)	1137
RseI	CAYNNNNRTG	2 cut(s)	218, 420
SaqAI	TTAA	4 cut(s)	297, 813, 911, 1076
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	249, 903, 1137
Sau96I	GGNCC	4 cut(s)	26, 317, 827, 892
ScrFI	CCNGG	5 cut(s)	49, 383, 834, 935, 1142
SduI	GDGCHC	3 cut(s)	72, 595, 670
SfaNI	GCATC	3 cut(s)	26, 851, 949
SfcI	CTRYAG	1 cut(s)	335
SinI	GGWCC	4 cut(s)	26, 317, 827, 892
SmiMI	CAYNNNNRTG	2 cut(s)	218, 420
SmlI	CTYRAG	1 cut(s)	1084
SmoI	CTYRAG	1 cut(s)	1084
Sse9I	AATT	7 cut(s)	253, 406, 485, 637, 700, 714, 912
SsiI	CCGC	3 cut(s)	5, 52, 793
SspMI	CTAG	3 cut(s)	98, 476, 654
StyD4I	CCNGG	5 cut(s)	47, 381, 832, 933, 1140
TaaI	ACNGT	1 cut(s)	928
TaiI	ACGT	4 cut(s)	66, 269, 729, 1109
TaqI	TCGA	3 cut(s)	136, 248, 860
TasI	AATT	7 cut(s)	253, 406, 485, 637, 700, 714, 912
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	297, 813, 911, 1076
Tru9I	TTAA	4 cut(s)	297, 813, 911, 1076
TscAI	CASTG	3 cut(s)	81, 714, 884
TseFI	GTSAC	1 cut(s)	631
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	3 cut(s)	108, 199, 547
TspRI	CASTG	3 cut(s)	81, 714, 884
Van91I	CCANNNNNTGG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	68
VpaK11BI	GGWCC	4 cut(s)	26, 317, 827, 892
XapI	RAATTY	2 cut(s)	485, 714
XceI	RCATGY	2 cut(s)	1048, 1083
XmiI	GTMKAC	1 cut(s)	1109
XspI	CTAG	3 cut(s)	98, 476, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.