Rroxscaffold_6G00414480

Rhomboid-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
36812318 .. 36815648
3331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414480.1

Sequence Viewer

Length: 1158 bp
ATGGCGGCAGACTCTCAATCAGGCACCACCCAGTTGCGGCTGAACTCGCGGCGGAGCTACGTGGTCCACCCCGTTGACATTGAGACGCCACCTCTAACTTCTCCGGCTCCCGCCACCGTGTTCCGGGAAATCAAGCATTTCAAGAAATGGGTTGTGTGGTTGATACCTACTTTTGTTATCATCAATACCATCATGTTTATCATCACTATGTATGTCAACAACTGCCCCAAGAACTCGGTCTCTTGCATTGCCACGTTCTTGGGGAGGTTCTCGTTCCAGCCTTTTAAGGAGAACCCTCTTCTTGGACCATCATCGTCTACGTTACAGAAGATGGGTGCTTTAGATGTGAAAAAGGTGGTTGATGATCACCAGGGGTGGCTTCTCATCACTTGCAATTGGCTACATGGTGGAGTTTTCCATTTGTTGGCGAATATGCTGAGTCTTTTGGTTATTGGGTACCGGCTAGAGCAAGAATTTGGTTTTGTGCGGATTGGTTTGCTATATGTCATCTCTGGACTTGGTGGGAGTTTGTTGTCTTCACTTTTCATCCAGTCAAATATCTCTGTTGGTGCTTCCGGTGCACTTTTTGGATTGCTGGGAGCCATGCTTTCTGAACTTATCACTAACTGGACGATATATGCTAGTAAGTTTGGAGCGCTTTTCACCCTCCTGATCATCATAGCAATCAATTTGGCTGTGGGAATTCTCCCACATGTGGATAACTTTGCTCACATTGGAGGATTCCTTTCGGGTTTCTTTCTGGGGTTCGTATTTCTTATCCGCCCTCAGTTCGGATGGGTTAACCAAAGATATGCTCCTCCAGAGTACAGATCATCTGAAGTTAAATCTAAGTTCAAGACCTATCAGTGCATTTTTTGGATCCTTTCGCTGGTTATTTTAATTGTTGGATTTACCGTTGGCCTGGTTATGCTTCTTCGGGGAGTTGATGCAAATGAACATTGTTCTTGGTGTCATTATTTGTCTTGTGTTCCTACATCAAAATGGAGCTGCAATTCAGAGCCCGCATACTGCTCGTCATCCCAGACAGGTGACCAGCTCTTTTTAACATGCTCGAGCAATGGAAAGAACGGCACATATACATATCCAAATGCAAGCAGTTCTCAAATCCAGGGGTTATGTTCTCAGCTTTGCAGTTGA

Protein Analysis

385

Amino Acids

42.52

Weight (kDa)

8.78

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 123 - 259 2.4e-40 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011657)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 456
AccB1I GGYRCC 2 cut(s) 23, 456
AccB7I CCANNNNNTGG 1 cut(s) 424
AccI GTMKAC 1 cut(s) 317
AccII CGCG 1 cut(s) 49
AciI CCGC 8 cut(s) 5, 37, 49, 52, 111, 487, 781, 1023
AclWI GGATC 2 cut(s) 874, 887
AcsI RAATTY 2 cut(s) 473, 702
AcuI CTGAAG 1 cut(s) 858
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 458, 827
AfeI AGCGCT 1 cut(s) 657
AfiI CCNNNNNNNGG 7 cut(s) 36, 123, 302, 424, 715, 791, 889
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 2 cut(s) 142, 856
AjnI CCWGG 3 cut(s) 369, 921, 1128
AluBI AGCT 4 cut(s) 57, 1008, 1057, 1147
AluI AGCT 4 cut(s) 57, 1008, 1057, 1147
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 2 cut(s) 77, 244
Alw44I GTGCAC 1 cut(s) 579
AlwI GGATC 2 cut(s) 874, 887
Ama87I CYCGRG 1 cut(s) 1072
Aor51HI AGCGCT 1 cut(s) 657
AoxI GGCC 1 cut(s) 919
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 1 cut(s) 1008
ApoI RAATTY 2 cut(s) 473, 702
Asp718I GGTACC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 64, 305
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 359, 655, 1061
AvaI CYCGRG 1 cut(s) 1072
AvaII GGWCC 2 cut(s) 64, 305
BaeGI GKGCMC 1 cut(s) 583
BamHI GGATCC 1 cut(s) 879
BanI GGYRCC 2 cut(s) 23, 456
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 1 cut(s) 995
BccI CCATC 4 cut(s) 197, 316, 325, 789
BceAI ACGGC 1 cut(s) 1105
BcgI CGANNNNNNTGC 2 cut(s) 1014, 1048
BciT130I CCWGG 3 cut(s) 371, 923, 1130
BclI TGATCA 2 cut(s) 364, 672
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 77, 244
BfaI CTAG 2 cut(s) 464, 642
BfoI RGCGCY 1 cut(s) 659
BisI GCNGC 4 cut(s) 6, 38, 50, 1009
BlsI GCNGC 4 cut(s) 7, 39, 51, 1010
Bme1390I CCNGG 4 cut(s) 125, 371, 923, 1130
Bme18I GGWCC 2 cut(s) 64, 305
BmeT110I CYCGRG 1 cut(s) 1072
BmgT120I GGNCC 2 cut(s) 64, 305
BmiI GGNNCC 5 cut(s) 25, 108, 458, 601, 881
BmrFI CCNGG 4 cut(s) 125, 371, 923, 1130
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 937
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 804
BpuMI CCSGG 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 370, 1129
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 7 cut(s) 36, 123, 302, 424, 715, 791, 889
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 3 cut(s) 31, 550, 632
Bse3DI GCAATG 2 cut(s) 246, 1084
BseBI CCWGG 3 cut(s) 371, 923, 1130
BseDI CCNNGG 2 cut(s) 370, 1129
BseGI GGATG 3 cut(s) 546, 800, 1037
BseLI CCNNNNNNNGG 7 cut(s) 36, 123, 302, 424, 715, 791, 889
BseMI GCAATG 2 cut(s) 246, 1084
BseMII CTCAG 3 cut(s) 428, 800, 1157
BseNI ACTGG 3 cut(s) 31, 550, 632
BseRI GAGGAG 1 cut(s) 807
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 1 cut(s) 995
BseYI CCCAGC 1 cut(s) 595
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 921
BshNI GGYRCC 2 cut(s) 23, 456
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 1072
BsiSI CCGG 4 cut(s) 104, 124, 460, 576
BslI CCNNNNNNNGG 7 cut(s) 36, 123, 302, 424, 715, 791, 889
BsmAI GTCTC 2 cut(s) 77, 244
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 921
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 1072
Bsp1286I GDGCHC 2 cut(s) 583, 1023
Bsp143I GATC 4 cut(s) 364, 672, 830, 879
BspACI CCGC 8 cut(s) 5, 37, 49, 52, 111, 487, 781, 1023
BspANI GGCC 1 cut(s) 921
BspCNI CTCAG 3 cut(s) 429, 799, 1156
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 5 cut(s) 25, 108, 458, 601, 881
BspPI GGATC 2 cut(s) 874, 887
BspT107I GGYRCC 2 cut(s) 23, 456
BspTNI GGTCTC 1 cut(s) 244
BsrDI GCAATG 2 cut(s) 246, 1084
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 3 cut(s) 31, 550, 632
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 370, 1129
BssMI GATC 4 cut(s) 364, 672, 830, 879
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 3 cut(s) 371, 923, 1130
Bst4CI ACNGT 2 cut(s) 118, 916
Bst6I CTCTTC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 1023, 1114
BstDEI CTNAG 4 cut(s) 437, 786, 849, 1143
BstEII GGTNACC 1 cut(s) 1049
BstF5I GGATG 3 cut(s) 546, 800, 1037
BstFNI CGCG 1 cut(s) 49
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 4 cut(s) 367, 675, 833, 882
BstMAI GTCTC 2 cut(s) 77, 244
BstMBI GATC 4 cut(s) 364, 672, 830, 879
BstMWI GCNNNNNNNGC 2 cut(s) 46, 578
BstNI CCWGG 3 cut(s) 371, 923, 1130
BstNSI RCATGY 2 cut(s) 716, 1071
BstPI GGTNACC 1 cut(s) 1049
BstSCI CCNGG 4 cut(s) 123, 369, 921, 1128
BstSLI GKGCMC 1 cut(s) 583
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 995
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 879
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 879
BsuRI GGCC 1 cut(s) 921
BtsCI GGATG 3 cut(s) 546, 800, 1037
BtsIMutI CAGTG 1 cut(s) 872
Cac8I GCNNGC 2 cut(s) 1023, 1114
CfoI GCGC 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 2 cut(s) 64, 305
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 457, 826
CviAII CATG 5 cut(s) 193, 404, 604, 713, 1068
CviQI GTAC 2 cut(s) 457, 826
DdeI CTNAG 4 cut(s) 437, 786, 849, 1143
DpnI GATC 4 cut(s) 366, 674, 832, 881
DpnII GATC 4 cut(s) 364, 672, 830, 879
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EciI GGCGGA 2 cut(s) 67, 770
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 64, 305
Eco47III AGCGCT 1 cut(s) 657
Eco57I CTGAAG 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 1072
Eco91I GGTNACC 1 cut(s) 1049
EcoO65I GGTNACC 1 cut(s) 1049
EcoRI GAATTC 1 cut(s) 702
EcoRII CCWGG 3 cut(s) 369, 921, 1128
EcoT38I GRGCYC 1 cut(s) 1023
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 5 cut(s) 196, 407, 607, 716, 1071
FatI CATG 5 cut(s) 192, 403, 603, 712, 1067
FauI CCCGC 2 cut(s) 118, 1030
FbaI TGATCA 2 cut(s) 364, 672
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 4 cut(s) 6, 38, 50, 1009
FokI GGATG 3 cut(s) 533, 807, 1024
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 4 cut(s) 6, 38, 50, 1009
FspBI CTAG 2 cut(s) 464, 642
GlaI GCGC 1 cut(s) 657
GluI GCNGC 4 cut(s) 6, 38, 50, 1009
GsaI CCCAGC 1 cut(s) 599
GsuI CTGGAG 1 cut(s) 804
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 1 cut(s) 921
HapII CCGG 4 cut(s) 104, 124, 460, 576
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 658
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 5 cut(s) 196, 407, 607, 716, 1071
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 3 cut(s) 76, 217, 802
HindII GTYRAC 3 cut(s) 76, 217, 802
HinfI GANTC 3 cut(s) 11, 439, 741
HpaI GTTAAC 1 cut(s) 802
HpaII CCGG 4 cut(s) 104, 124, 460, 576
HphI GGTGA 3 cut(s) 359, 655, 1061
Hpy166II GTNNAC 6 cut(s) 67, 76, 217, 318, 581, 802
Hpy188I TCNGA 4 cut(s) 613, 794, 838, 1018
Hpy188III TCNNGA 5 cut(s) 142, 513, 670, 821, 856
Hpy8I GTNNAC 6 cut(s) 67, 76, 217, 318, 581, 802
HpyCH4III ACNGT 2 cut(s) 118, 916
HpyCH4IV ACGT 3 cut(s) 60, 254, 320
HpyCH4V TGCA 8 cut(s) 246, 393, 581, 870, 950, 1011, 1112, 1152
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 578
HpyF3I CTNAG 4 cut(s) 437, 786, 849, 1143
HpySE526I ACGT 3 cut(s) 60, 254, 320
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 5 cut(s) 196, 407, 607, 716, 1071
HspAI GCGC 1 cut(s) 656
KpnI GGTACC 1 cut(s) 460
Ksp22I TGATCA 2 cut(s) 364, 672
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 4 cut(s) 364, 672, 830, 879
LmnI GCTCC 6 cut(s) 54, 112, 599, 653, 820, 1005
Lsp1109I GCAGC 1 cut(s) 995
LweI GCATC 1 cut(s) 937
MaeI CTAG 2 cut(s) 464, 642
MaeII ACGT 3 cut(s) 60, 254, 320
MaeIII GTNAC 2 cut(s) 321, 1049
MalI GATC 4 cut(s) 366, 674, 832, 881
MboI GATC 4 cut(s) 364, 672, 830, 879
MboII GAAGA 4 cut(s) 290, 340, 528, 926
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 1 cut(s) 879
MhlI GDGCHC 2 cut(s) 583, 1023
MluCI AATT 6 cut(s) 394, 473, 688, 702, 900, 1012
MlyI GAGTC 2 cut(s) 5, 448
MmeI TCCRAC 1 cut(s) 886
MnlI CCTC 7 cut(s) 102, 258, 306, 677, 731, 795, 828
MseI TTAA 5 cut(s) 285, 801, 843, 899, 1064
MslI CAYNNNNRTG 2 cut(s) 206, 1000
MspI CCGG 4 cut(s) 104, 124, 460, 576
MspR9I CCNGG 4 cut(s) 125, 371, 923, 1130
MunI CAATTG 1 cut(s) 394
MvaI CCWGG 3 cut(s) 371, 923, 1130
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 46, 578
NciI CCSGG 1 cut(s) 125
NdeII GATC 4 cut(s) 364, 672, 830, 879
NlaIII CATG 5 cut(s) 196, 407, 607, 716, 1071
NlaIV GGNNCC 5 cut(s) 25, 108, 458, 601, 881
NmuCI GTSAC 1 cut(s) 1049
NspI RCATGY 2 cut(s) 716, 1071
PaeR7I CTCGAG 1 cut(s) 1072
PciI ACATGT 1 cut(s) 712
PfeI GAWTC 1 cut(s) 741
PflMI CCANNNNNTGG 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 4 cut(s) 7, 39, 51, 1010
PleI GAGTC 2 cut(s) 5, 447
PpsI GAGTC 2 cut(s) 5, 447
Ppu21I YACGTR 1 cut(s) 61
PscI ACATGT 1 cut(s) 712
Psp6I CCWGG 3 cut(s) 369, 921, 1128
PspEI GGTNACC 1 cut(s) 1049
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 3 cut(s) 369, 921, 1128
PspN4I GGNNCC 5 cut(s) 25, 108, 458, 601, 881
PspPI GGNCC 2 cut(s) 64, 305
PspXI VCTCGAGB 1 cut(s) 1072
PsuI RGATCY 1 cut(s) 879
RsaI GTAC 2 cut(s) 458, 827
RsaNI GTAC 2 cut(s) 457, 826
RseI CAYNNNNRTG 2 cut(s) 206, 1000
SaqAI TTAA 5 cut(s) 285, 801, 843, 899, 1064
SatI GCNGC 4 cut(s) 6, 38, 50, 1009
Sau3AI GATC 4 cut(s) 364, 672, 830, 879
Sau96I GGNCC 2 cut(s) 64, 305
SchI GAGTC 2 cut(s) 5, 448
ScrFI CCNGG 4 cut(s) 125, 371, 923, 1130
SduI GDGCHC 2 cut(s) 583, 1023
SfaNI GCATC 1 cut(s) 937
Sfr274I CTCGAG 1 cut(s) 1072
SinI GGWCC 2 cut(s) 64, 305
SlaI CTCGAG 1 cut(s) 1072
SmiMI CAYNNNNRTG 2 cut(s) 206, 1000
SmlI CTYRAG 1 cut(s) 1072
SmoI CTYRAG 1 cut(s) 1072
Sse9I AATT 6 cut(s) 394, 473, 688, 702, 900, 1012
SsiI CCGC 8 cut(s) 5, 37, 49, 52, 111, 487, 781, 1023
SspMI CTAG 2 cut(s) 464, 642
StyD4I CCNGG 4 cut(s) 123, 369, 921, 1128
TaaI ACNGT 2 cut(s) 118, 916
TaiI ACGT 3 cut(s) 63, 257, 323
TaqI TCGA 1 cut(s) 1073
TaqII GACCGA 1 cut(s) 226
TasI AATT 6 cut(s) 394, 473, 688, 702, 900, 1012
TatI WGTACW 1 cut(s) 825
TauI GCSGC 3 cut(s) 8, 40, 52
TfiI GAWTC 1 cut(s) 741
Tru1I TTAA 5 cut(s) 285, 801, 843, 899, 1064
Tru9I TTAA 5 cut(s) 285, 801, 843, 899, 1064
TscAI CASTG 1 cut(s) 872
TseFI GTSAC 1 cut(s) 1049
TseI GCWGC 1 cut(s) 1008
Tsp45I GTSAC 1 cut(s) 1049
TspDTI ATGAA 2 cut(s) 535, 969
TspRI CASTG 1 cut(s) 872
Van91I CCANNNNNTGG 1 cut(s) 424
VneI GTGCAC 1 cut(s) 579
VpaK11BI GGWCC 2 cut(s) 64, 305
XapI RAATTY 2 cut(s) 473, 702
XceI RCATGY 2 cut(s) 716, 1071
XhoI CTCGAG 1 cut(s) 1072
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 2 cut(s) 464, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.