RLG00000024575

Rhomboid-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
37190219 .. 37193070
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024575

Sequence Viewer

Length: 1164 bp
ATGGCGGCAGACTCTCAATCAGGCGCCACCCAGTTGCGGCTGAACTCGCGGCGGAGCTACGTTGTCCACCCGGTTGACATTGAGACGCCACCTCTAACTTCTCCGGCTCCCGCCACGCCCGCCGTGTTCCGGGAAATCAAGCATTTCAAGAAATGGGTTGTGTGGTTGATACCTACTTTTGTTATCATCAATACCATCATGTTTATCATCACTATGTATGTCAACAACTGCCCCAAGAACTCGGTTTCTTGCATTGCCACGTTCTTGGGGAGGTTCTCGTTCCAGCCTTTTAAGGAGAATCCTCTTCTTGGGCCATCATCGTCTACGCTACAGAAGATGGGTGCTTTAGATGTGAAAAAGGTGGTTGATGATCACCAGGGGTGGCTTCTCATCACTTGCAATTGGCTACATGGTGGAGTTTTCCATTTGTTGGCGAATATGCTGAGTCTTTTGGTTATTGGGTACCGGCTAGAGCAAGAATTTGGTTTTGTGCGGATTGGTTTGCTATATGTCATCTCTGGACTTGGTGGGAGTTTGATGTCTTCACTTTTCATCCAGTCAAATATCTCTGTTGGTGCTTCCGGTGCACTTTTTGGATTGCTGGGAGCCATGCTTTCTGAACTTATCACTAACTGGACGATATATGCTAGTAAGTTTGGAGCGCTTTTCACCCTCCTGATCATCATAGCAATCAATTTGGCAGTGGGAATTCTCCCACATGTGGATAACTTTGCTCACATTGGAGGATTCCTTTCGGGTTTCTTTCTAGGTTTTGTATTTCTTATCCGCCCTCAGTTCGGATGGGTTAACCAAAGATATGCTCCTCCAGAGTACAGATCATCTGAAGTTAAATCGAAGTTCAAGACCTATCAGTGCATTTTTTGGATCCTTTCGCTGGTTATTTTAATCGTTGGATTTACTGTTGGCCTGGTTATGCTTCTTCGGGGAGTTGATGCAAATGAACATTGTTCTTGGTGTCATTATTTGTCGTGTGTTCCTACATCAAAATGGAGCTGCAATTCAGAGCCCGCATACTGCTCGTCAACCCAGACAGGTGACCAGCTCTTTTTAACATGCTCAAGCAATGGAAAGAACGGCACTTATACATATCCAAATGCAAGCAGTTCTCAGATCCAGGGGTTGTGTTCTCAGCTTTGCAGTTGA

Protein Analysis

388

Amino Acids

42.69

Weight (kDa)

8.78

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 125 - 261 1.8e-40 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011657)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 2 cut(s) 23, 462
AccB7I CCANNNNNTGG 1 cut(s) 430
AccI GTMKAC 1 cut(s) 323
AccII CGCG 1 cut(s) 49
AciI CCGC 9 cut(s) 5, 37, 49, 52, 111, 120, 493, 787, 1029
AclWI GGATC 3 cut(s) 880, 893, 1126
AcsI RAATTY 2 cut(s) 479, 708
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 2 cut(s) 24, 86
AfaI GTAC 2 cut(s) 464, 833
AfeI AGCGCT 1 cut(s) 663
AfiI CCNNNNNNNGG 7 cut(s) 36, 129, 308, 430, 721, 797, 895
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 2 cut(s) 148, 862
AjnI CCWGG 3 cut(s) 375, 927, 1134
AluBI AGCT 4 cut(s) 57, 1014, 1063, 1153
AluI AGCT 4 cut(s) 57, 1014, 1063, 1153
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 1 cut(s) 77
Alw44I GTGCAC 1 cut(s) 585
AlwI GGATC 3 cut(s) 880, 893, 1126
Aor51HI AGCGCT 1 cut(s) 663
AoxI GGCC 2 cut(s) 311, 925
ApaLI GTGCAC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 1014
ApoI RAATTY 2 cut(s) 479, 708
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 2 cut(s) 26, 664
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 2 cut(s) 71, 131
AsuHPI GGTGA 3 cut(s) 365, 661, 1067
BaeGI GKGCMC 1 cut(s) 589
BamHI GGATCC 1 cut(s) 885
BanI GGYRCC 2 cut(s) 23, 462
BanII GRGCYC 1 cut(s) 1029
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 1001
BccI CCATC 4 cut(s) 203, 322, 331, 795
BceAI ACGGC 2 cut(s) 107, 1111
BcgI CGANNNNNNTGC 2 cut(s) 1020, 1054
BciT130I CCWGG 3 cut(s) 377, 929, 1136
BclI TGATCA 2 cut(s) 370, 678
BcnI CCSGG 2 cut(s) 71, 131
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 3 cut(s) 470, 648, 767
BfmI CTRYAG 1 cut(s) 329
BfoI RGCGCY 2 cut(s) 27, 665
BisI GCNGC 4 cut(s) 6, 38, 50, 1015
BlsI GCNGC 4 cut(s) 7, 39, 51, 1016
Bme1390I CCNGG 5 cut(s) 71, 131, 377, 929, 1136
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 5 cut(s) 25, 108, 464, 607, 887
BmrFI CCNGG 5 cut(s) 71, 131, 377, 929, 1136
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 943
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 1063
BpuMI CCSGG 2 cut(s) 71, 131
BsaHI GRCGYC 2 cut(s) 24, 86
BsaJI CCNNGG 2 cut(s) 376, 1135
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 7 cut(s) 36, 129, 308, 430, 721, 797, 895
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 31, 556, 638
Bse3DI GCAATG 2 cut(s) 252, 1090
BseBI CCWGG 3 cut(s) 377, 929, 1136
BseDI CCNNGG 2 cut(s) 376, 1135
BseGI GGATG 2 cut(s) 552, 806
BseLI CCNNNNNNNGG 7 cut(s) 36, 129, 308, 430, 721, 797, 895
BseMI GCAATG 2 cut(s) 252, 1090
BseMII CTCAG 4 cut(s) 434, 806, 1142, 1163
BseNI ACTGG 3 cut(s) 31, 556, 638
BseRI GAGGAG 1 cut(s) 813
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 1 cut(s) 1001
BseYI CCCAGC 1 cut(s) 601
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 2 cut(s) 313, 927
BshNI GGYRCC 2 cut(s) 23, 462
BsiHKAI GWGCWC 1 cut(s) 589
BsiSI CCGG 5 cut(s) 71, 104, 130, 466, 582
BslI CCNNNNNNNGG 7 cut(s) 36, 129, 308, 430, 721, 797, 895
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 2 cut(s) 313, 927
Bsp1286I GDGCHC 2 cut(s) 589, 1029
Bsp143I GATC 5 cut(s) 370, 678, 836, 885, 1131
BspACI CCGC 9 cut(s) 5, 37, 49, 52, 111, 120, 493, 787, 1029
BspANI GGCC 2 cut(s) 313, 927
BspCNI CTCAG 4 cut(s) 435, 805, 1141, 1162
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 5 cut(s) 25, 108, 464, 607, 887
BspPI GGATC 3 cut(s) 880, 893, 1126
BspT107I GGYRCC 2 cut(s) 23, 462
BsrDI GCAATG 2 cut(s) 252, 1090
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 3 cut(s) 31, 556, 638
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 2 cut(s) 376, 1135
BssMI GATC 5 cut(s) 370, 678, 836, 885, 1131
BssNI GRCGYC 2 cut(s) 24, 86
Bst2UI CCWGG 3 cut(s) 377, 929, 1136
Bst4CI ACNGT 1 cut(s) 922
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 2 cut(s) 24, 86
BstC8I GCNNGC 3 cut(s) 120, 1029, 1120
BstDEI CTNAG 4 cut(s) 443, 792, 1128, 1149
BstEII GGTNACC 1 cut(s) 1055
BstF5I GGATG 2 cut(s) 552, 806
BstFNI CGCG 1 cut(s) 49
BstH2I RGCGCY 2 cut(s) 27, 665
BstHHI GCGC 2 cut(s) 26, 664
BstKTI GATC 5 cut(s) 373, 681, 839, 888, 1134
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 5 cut(s) 370, 678, 836, 885, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 46, 119, 584
BstNI CCWGG 3 cut(s) 377, 929, 1136
BstNSI RCATGY 2 cut(s) 722, 1077
BstPI GGTNACC 1 cut(s) 1055
BstSCI CCNGG 5 cut(s) 69, 129, 375, 927, 1134
BstSFI CTRYAG 1 cut(s) 329
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 1001
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 885, 1131
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 2 cut(s) 885, 1131
BsuRI GGCC 2 cut(s) 313, 927
BtsCI GGATG 2 cut(s) 552, 806
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 708, 878
Cac8I GCNNGC 3 cut(s) 120, 1029, 1120
CfoI GCGC 2 cut(s) 26, 664
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 463, 832
CviAII CATG 5 cut(s) 199, 410, 610, 719, 1074
CviQI GTAC 2 cut(s) 463, 832
DdeI CTNAG 4 cut(s) 443, 792, 1128, 1149
DinI GGCGCC 1 cut(s) 25
DpnI GATC 5 cut(s) 372, 680, 838, 887, 1133
DpnII GATC 5 cut(s) 370, 678, 836, 885, 1131
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 2 cut(s) 67, 776
Eco24I GRGCYC 1 cut(s) 1029
Eco47III AGCGCT 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 864
Eco91I GGTNACC 1 cut(s) 1055
EcoO65I GGTNACC 1 cut(s) 1055
EcoRI GAATTC 1 cut(s) 708
EcoRII CCWGG 3 cut(s) 375, 927, 1134
EcoT38I GRGCYC 1 cut(s) 1029
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 5 cut(s) 202, 413, 613, 722, 1077
FatI CATG 5 cut(s) 198, 409, 609, 718, 1073
FauI CCCGC 3 cut(s) 118, 127, 1036
FbaI TGATCA 2 cut(s) 370, 678
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 4 cut(s) 6, 38, 50, 1015
FokI GGATG 2 cut(s) 539, 813
FriOI GRGCYC 1 cut(s) 1029
Fsp4HI GCNGC 4 cut(s) 6, 38, 50, 1015
FspBI CTAG 3 cut(s) 470, 648, 767
GlaI GCGC 2 cut(s) 25, 663
GluI GCNGC 4 cut(s) 6, 38, 50, 1015
GsaI CCCAGC 1 cut(s) 605
GsuI CTGGAG 1 cut(s) 810
HaeII RGCGCY 2 cut(s) 27, 665
HaeIII GGCC 2 cut(s) 313, 927
HapII CCGG 5 cut(s) 71, 104, 130, 466, 582
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 26, 664
Hin1I GRCGYC 2 cut(s) 24, 86
Hin1II CATG 5 cut(s) 202, 413, 613, 722, 1077
Hin6I GCGC 2 cut(s) 24, 662
HinP1I GCGC 2 cut(s) 24, 662
HincII GTYRAC 4 cut(s) 76, 223, 808, 1044
HindII GTYRAC 4 cut(s) 76, 223, 808, 1044
HinfI GANTC 4 cut(s) 11, 298, 445, 747
HpaI GTTAAC 1 cut(s) 808
HpaII CCGG 5 cut(s) 71, 104, 130, 466, 582
HphI GGTGA 3 cut(s) 365, 661, 1067
Hpy166II GTNNAC 7 cut(s) 67, 76, 223, 324, 587, 808, 1044
Hpy188I TCNGA 5 cut(s) 619, 800, 844, 1024, 1131
Hpy188III TCNNGA 5 cut(s) 148, 519, 676, 827, 862
Hpy8I GTNNAC 7 cut(s) 67, 76, 223, 324, 587, 808, 1044
HpyCH4III ACNGT 1 cut(s) 922
HpyCH4IV ACGT 2 cut(s) 60, 260
HpyCH4V TGCA 8 cut(s) 252, 399, 587, 876, 956, 1017, 1118, 1158
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 119, 584
HpyF3I CTNAG 4 cut(s) 443, 792, 1128, 1149
HpySE526I ACGT 2 cut(s) 60, 260
Hsp92I GRCGYC 2 cut(s) 24, 86
Hsp92II CATG 5 cut(s) 202, 413, 613, 722, 1077
HspAI GCGC 2 cut(s) 24, 662
KasI GGCGCC 1 cut(s) 23
KpnI GGTACC 1 cut(s) 466
Ksp22I TGATCA 2 cut(s) 370, 678
KspAI GTTAAC 1 cut(s) 808
Kzo9I GATC 5 cut(s) 370, 678, 836, 885, 1131
LmnI GCTCC 6 cut(s) 54, 112, 605, 659, 826, 1011
Lsp1109I GCAGC 1 cut(s) 1001
LweI GCATC 1 cut(s) 943
MaeI CTAG 3 cut(s) 470, 648, 767
MaeII ACGT 2 cut(s) 60, 260
MaeIII GTNAC 1 cut(s) 1055
MalI GATC 5 cut(s) 372, 680, 838, 887, 1133
MboI GATC 5 cut(s) 370, 678, 836, 885, 1131
MboII GAAGA 4 cut(s) 296, 346, 534, 932
MfeI CAATTG 1 cut(s) 400
MflI RGATCY 2 cut(s) 885, 1131
MhlI GDGCHC 2 cut(s) 589, 1029
MluCI AATT 5 cut(s) 400, 479, 694, 708, 1018
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 2 cut(s) 5, 454
MmeI TCCRAC 1 cut(s) 892
MnlI CCTC 7 cut(s) 102, 264, 312, 683, 737, 801, 834
MseI TTAA 5 cut(s) 291, 807, 849, 905, 1070
MslI CAYNNNNRTG 2 cut(s) 212, 1006
MspI CCGG 5 cut(s) 71, 104, 130, 466, 582
MspR9I CCNGG 5 cut(s) 71, 131, 377, 929, 1136
MunI CAATTG 1 cut(s) 400
MvaI CCWGG 3 cut(s) 377, 929, 1136
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 46, 119, 584
NarI GGCGCC 1 cut(s) 24
NciI CCSGG 2 cut(s) 71, 131
NdeII GATC 5 cut(s) 370, 678, 836, 885, 1131
NlaIII CATG 5 cut(s) 202, 413, 613, 722, 1077
NlaIV GGNNCC 5 cut(s) 25, 108, 464, 607, 887
NmuCI GTSAC 1 cut(s) 1055
NspI RCATGY 2 cut(s) 722, 1077
PciI ACATGT 1 cut(s) 718
PfeI GAWTC 2 cut(s) 298, 747
PflMI CCANNNNNTGG 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 4 cut(s) 7, 39, 51, 1016
PleI GAGTC 2 cut(s) 5, 453
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 2 cut(s) 5, 453
PscI ACATGT 1 cut(s) 718
Psp6I CCWGG 3 cut(s) 375, 927, 1134
PspEI GGTNACC 1 cut(s) 1055
PspFI CCCAGC 1 cut(s) 601
PspGI CCWGG 3 cut(s) 375, 927, 1134
PspN4I GGNNCC 5 cut(s) 25, 108, 464, 607, 887
PspPI GGNCC 1 cut(s) 311
PsuI RGATCY 2 cut(s) 885, 1131
RsaI GTAC 2 cut(s) 464, 833
RsaNI GTAC 2 cut(s) 463, 832
RseI CAYNNNNRTG 2 cut(s) 212, 1006
SaqAI TTAA 5 cut(s) 291, 807, 849, 905, 1070
SatI GCNGC 4 cut(s) 6, 38, 50, 1015
Sau3AI GATC 5 cut(s) 370, 678, 836, 885, 1131
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 2 cut(s) 5, 454
ScrFI CCNGG 5 cut(s) 71, 131, 377, 929, 1136
SduI GDGCHC 2 cut(s) 589, 1029
SfaNI GCATC 1 cut(s) 943
SfcI CTRYAG 1 cut(s) 329
SfoI GGCGCC 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 212, 1006
SmlI CTYRAG 1 cut(s) 1078
SmoI CTYRAG 1 cut(s) 1078
Sse9I AATT 5 cut(s) 400, 479, 694, 708, 1018
SsiI CCGC 9 cut(s) 5, 37, 49, 52, 111, 120, 493, 787, 1029
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 3 cut(s) 470, 648, 767
StyD4I CCNGG 5 cut(s) 69, 129, 375, 927, 1134
TaaI ACNGT 1 cut(s) 922
TaiI ACGT 2 cut(s) 63, 263
TaqI TCGA 1 cut(s) 854
TasI AATT 5 cut(s) 400, 479, 694, 708, 1018
TatI WGTACW 1 cut(s) 831
TauI GCSGC 3 cut(s) 8, 40, 52
TfiI GAWTC 2 cut(s) 298, 747
Tru1I TTAA 5 cut(s) 291, 807, 849, 905, 1070
Tru9I TTAA 5 cut(s) 291, 807, 849, 905, 1070
TscAI CASTG 2 cut(s) 708, 878
TseFI GTSAC 1 cut(s) 1055
TseI GCWGC 1 cut(s) 1014
Tsp45I GTSAC 1 cut(s) 1055
TspDTI ATGAA 2 cut(s) 541, 975
TspRI CASTG 2 cut(s) 708, 878
Van91I CCANNNNNTGG 1 cut(s) 430
VneI GTGCAC 1 cut(s) 585
XapI RAATTY 2 cut(s) 479, 708
XceI RCATGY 2 cut(s) 722, 1077
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 3 cut(s) 470, 648, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.