Rhomboid-like protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53780 AT3G53780 AT3G53780 |
| fragaria_vesca | FvH4_6g13560 |
| malus_domestica | MD04G1130000.v1.1 MD12G1143100.v1.1 |
| prunus_persica | Prupe.6G256700_v2.0.a1 |
| pyrus_communis | pycom04g11830 pycom12g13780 |
| rosa_chinensis | RchiOBHm_Chr3g0466421 |
| rosa_laevigata | RLG00000024575 |
| rosa_multiflora | Rmu_co8379997.1_g000002 Rmu_sc0003332.1_g000027 Rmu_sc0003480.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00414480 |
| rosa_samantha | Rh3AG128300 Rh3BG149600 Rh3DG150300 |
| rosa_wichuraiana | Rw3G012120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 314, 436 |
| AccI | GTMKAC | 2 cut(s) | 78, 1115 |
| AccII | CGCG | 1 cut(s) | 119 |
| AccIII | TCCGGA | 1 cut(s) | 498 |
| AciI | CCGC | 6 cut(s) | 5, 52, 92, 95, 117, 793 |
| AclI | AACGTT | 1 cut(s) | 198 |
| AclWI | GGATC | 1 cut(s) | 1138 |
| AcoI | YGGCCR | 1 cut(s) | 114 |
| AcyI | GRCGYC | 1 cut(s) | 89 |
| AfaI | GTAC | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 23, 112, 314, 436, 803, 839 |
| AflIII | ACRYGT | 1 cut(s) | 724 |
| AgeI | ACCGGT | 1 cut(s) | 471 |
| AgsI | TTSAA | 3 cut(s) | 154, 874, 1017 |
| AjnI | CCWGG | 4 cut(s) | 381, 832, 838, 1146 |
| AluBI | AGCT | 3 cut(s) | 110, 1026, 1165 |
| AluI | AGCT | 3 cut(s) | 110, 1026, 1165 |
| Alw21I | GWGCWC | 2 cut(s) | 595, 670 |
| Alw26I | GTCTC | 3 cut(s) | 80, 126, 256 |
| Alw44I | GTGCAC | 1 cut(s) | 591 |
| AlwI | GGATC | 1 cut(s) | 1138 |
| Ama87I | CYCGRG | 1 cut(s) | 1090 |
| Aor13HI | TCCGGA | 1 cut(s) | 498 |
| AoxI | GGCC | 3 cut(s) | 27, 114, 937 |
| ApaI | GGGCCC | 1 cut(s) | 31 |
| ApaLI | GTGCAC | 1 cut(s) | 591 |
| ApeKI | GCWGC | 2 cut(s) | 191, 1026 |
| AsiGI | ACCGGT | 1 cut(s) | 471 |
| AspS9I | GGNCC | 5 cut(s) | 27, 28, 317, 836, 898 |
| AsuHPI | GGTGA | 3 cut(s) | 208, 667, 1079 |
| AsuNHI | GCTAGC | 1 cut(s) | 97 |
| AvaI | CYCGRG | 1 cut(s) | 1090 |
| AvaII | GGWCC | 3 cut(s) | 317, 836, 898 |
| BaeGI | GKGCMC | 2 cut(s) | 31, 595 |
| BanII | GRGCYC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 540 |
| Bbv12I | GWGCWC | 2 cut(s) | 595, 670 |
| BbvI | GCAGC | 2 cut(s) | 178, 1013 |
| BccI | CCATC | 4 cut(s) | 337, 801, 1014, 1057 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BciT130I | CCWGG | 4 cut(s) | 383, 834, 840, 1148 |
| BciVI | GTATCC | 1 cut(s) | 461 |
| BclI | TGATCA | 2 cut(s) | 684, 1069 |
| BcoDI | GTCTC | 3 cut(s) | 80, 126, 256 |
| BfaI | CTAG | 2 cut(s) | 98, 654 |
| BfuI | GTATCC | 1 cut(s) | 461 |
| BisI | GCNGC | 6 cut(s) | 53, 92, 95, 117, 192, 1027 |
| BlsI | GCNGC | 6 cut(s) | 54, 93, 96, 118, 193, 1028 |
| Bme1390I | CCNGG | 4 cut(s) | 383, 834, 840, 1148 |
| Bme18I | GGWCC | 3 cut(s) | 317, 836, 898 |
| BmeT110I | CYCGRG | 1 cut(s) | 1090 |
| BmgT120I | GGNCC | 5 cut(s) | 27, 28, 317, 836, 898 |
| BmiI | GGNNCC | 7 cut(s) | 12, 28, 29, 613, 899, 1038, 1122 |
| BmrFI | CCNGG | 4 cut(s) | 383, 834, 840, 1148 |
| BmrI | ACTGGG | 2 cut(s) | 68, 793 |
| BmsI | GCATC | 1 cut(s) | 955 |
| BmtI | GCTAGC | 1 cut(s) | 101 |
| BmuI | ACTGGG | 2 cut(s) | 68, 793 |
| BpiI | GAAGAC | 1 cut(s) | 540 |
| BpmI | CTGGAG | 1 cut(s) | 816 |
| BsaHI | GRCGYC | 1 cut(s) | 89 |
| BsaJI | CCNNGG | 2 cut(s) | 382, 1147 |
| BsaWI | WCCGGW | 2 cut(s) | 471, 498 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 32 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 23, 112, 314, 436, 803, 839 |
| Bse118I | RCCGGY | 1 cut(s) | 471 |
| Bse1I | ACTGG | 2 cut(s) | 74, 799 |
| Bse3DI | GCAATG | 2 cut(s) | 258, 1102 |
| BseAI | TCCGGA | 1 cut(s) | 498 |
| BseBI | CCWGG | 4 cut(s) | 383, 834, 840, 1148 |
| BseDI | CCNNGG | 2 cut(s) | 382, 1147 |
| BseGI | GGATG | 2 cut(s) | 361, 812 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 23, 112, 314, 436, 803, 839 |
| BseMI | GCAATG | 2 cut(s) | 258, 1102 |
| BseMII | CTCAG | 3 cut(s) | 261, 1154, 1175 |
| BseNI | ACTGG | 2 cut(s) | 74, 799 |
| BseSI | GKGCMC | 2 cut(s) | 31, 595 |
| BseX3I | CGGCCG | 1 cut(s) | 114 |
| BseXI | GCAGC | 2 cut(s) | 178, 1013 |
| BseYI | CCCAGC | 2 cut(s) | 106, 607 |
| BsgI | GTGCAG | 1 cut(s) | 1033 |
| Bsh1236I | CGCG | 1 cut(s) | 119 |
| Bsh1285I | CGRYCG | 1 cut(s) | 117 |
| BshFI | GGCC | 3 cut(s) | 29, 116, 939 |
| BshTI | ACCGGT | 1 cut(s) | 471 |
| BsiEI | CGRYCG | 1 cut(s) | 117 |
| BsiHKAI | GWGCWC | 2 cut(s) | 595, 670 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1090 |
| BsiSI | CCGG | 3 cut(s) | 113, 472, 499 |
| BslFI | GGGAC | 2 cut(s) | 727, 1123 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 23, 112, 314, 436, 803, 839 |
| BsmAI | GTCTC | 3 cut(s) | 80, 126, 256 |
| BsmBI | CGTCTC | 2 cut(s) | 80, 126 |
| BsmFI | GGGAC | 2 cut(s) | 727, 1123 |
| BsnI | GGCC | 3 cut(s) | 29, 116, 939 |
| BsoBI | CYCGRG | 1 cut(s) | 1090 |
| Bsp120I | GGGCCC | 1 cut(s) | 27 |
| Bsp1286I | GDGCHC | 3 cut(s) | 31, 595, 670 |
| Bsp13I | TCCGGA | 1 cut(s) | 498 |
| Bsp1407I | TGTACA | 1 cut(s) | 132 |
| Bsp143I | GATC | 5 cut(s) | 141, 684, 909, 1069, 1143 |
| BspACI | CCGC | 6 cut(s) | 5, 52, 92, 95, 117, 793 |
| BspANI | GGCC | 3 cut(s) | 29, 116, 939 |
| BspCNI | CTCAG | 3 cut(s) | 260, 1153, 1174 |
| BspEI | TCCGGA | 1 cut(s) | 498 |
| BspFNI | CGCG | 1 cut(s) | 119 |
| BspLI | GGNNCC | 7 cut(s) | 12, 28, 29, 613, 899, 1038, 1122 |
| BspOI | GCTAGC | 1 cut(s) | 101 |
| BspPI | GGATC | 1 cut(s) | 1138 |
| BsrDI | GCAATG | 2 cut(s) | 258, 1102 |
| BsrFI | RCCGGY | 1 cut(s) | 471 |
| BsrGI | TGTACA | 1 cut(s) | 132 |
| BsrI | ACTGG | 2 cut(s) | 74, 799 |
| BssAI | RCCGGY | 1 cut(s) | 471 |
| BssECI | CCNNGG | 2 cut(s) | 382, 1147 |
| BssMI | GATC | 5 cut(s) | 141, 684, 909, 1069, 1143 |
| BssNAI | GTATAC | 1 cut(s) | 1116 |
| BssNI | GRCGYC | 1 cut(s) | 89 |
| Bst1107I | GTATAC | 1 cut(s) | 1116 |
| Bst2UI | CCWGG | 4 cut(s) | 383, 834, 840, 1148 |
| Bst4CI | ACNGT | 4 cut(s) | 18, 321, 934, 1120 |
| BstACI | GRCGYC | 1 cut(s) | 89 |
| BstAUI | TGTACA | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 3 cut(s) | 99, 1041, 1132 |
| BstDEI | CTNAG | 3 cut(s) | 247, 1140, 1161 |
| BstF5I | GGATG | 2 cut(s) | 361, 812 |
| BstFNI | CGCG | 1 cut(s) | 119 |
| BstKTI | GATC | 5 cut(s) | 144, 687, 912, 1072, 1146 |
| BstMAI | GTCTC | 3 cut(s) | 80, 126, 256 |
| BstMBI | GATC | 5 cut(s) | 141, 684, 909, 1069, 1143 |
| BstMCI | CGRYCG | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 107, 116, 590 |
| BstNI | CCWGG | 4 cut(s) | 383, 834, 840, 1148 |
| BstNSI | RCATGY | 1 cut(s) | 1089 |
| BstSCI | CCNGG | 4 cut(s) | 381, 832, 838, 1146 |
| BstSLI | GKGCMC | 2 cut(s) | 31, 595 |
| BstUI | CGCG | 1 cut(s) | 119 |
| BstV1I | GCAGC | 2 cut(s) | 178, 1013 |
| BstV2I | GAAGAC | 1 cut(s) | 540 |
| BstX2I | RGATCY | 1 cut(s) | 1143 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 271 |
| BstYI | RGATCY | 1 cut(s) | 1143 |
| BstZ17I | GTATAC | 1 cut(s) | 1116 |
| BstZI | CGGCCG | 1 cut(s) | 114 |
| BsuI | GTATCC | 1 cut(s) | 461 |
| BsuRI | GGCC | 3 cut(s) | 29, 116, 939 |
| BtsCI | GGATG | 2 cut(s) | 361, 812 |
| BtsI | GCAGTG | 1 cut(s) | 714 |
| BtsIMutI | CAGTG | 2 cut(s) | 714, 890 |
| Cac8I | GCNNGC | 3 cut(s) | 99, 1041, 1132 |
| Cfr10I | RCCGGY | 1 cut(s) | 471 |
| Cfr13I | GGNCC | 5 cut(s) | 27, 28, 317, 836, 898 |
| CseI | GACGC | 2 cut(s) | 97, 108 |
| Csp6I | GTAC | 1 cut(s) | 133 |
| CspAI | ACCGGT | 1 cut(s) | 471 |
| CviAII | CATG | 4 cut(s) | 220, 416, 616, 1086 |
| CviQI | GTAC | 1 cut(s) | 133 |
| DdeI | CTNAG | 3 cut(s) | 247, 1140, 1161 |
| DpnI | GATC | 5 cut(s) | 143, 686, 911, 1071, 1145 |
| DpnII | GATC | 5 cut(s) | 141, 684, 909, 1069, 1143 |
| EaeI | YGGCCR | 1 cut(s) | 114 |
| EagI | CGGCCG | 1 cut(s) | 114 |
| EciI | GGCGGA | 1 cut(s) | 782 |
| EclXI | CGGCCG | 1 cut(s) | 114 |
| Eco24I | GRGCYC | 1 cut(s) | 31 |
| Eco47I | GGWCC | 3 cut(s) | 317, 836, 898 |
| Eco52I | CGGCCG | 1 cut(s) | 114 |
| Eco88I | CYCGRG | 1 cut(s) | 1090 |
| EcoO109I | RGGNCCY | 2 cut(s) | 27, 898 |
| EcoRII | CCWGG | 4 cut(s) | 381, 832, 838, 1146 |
| EcoT38I | GRGCYC | 1 cut(s) | 31 |
| Esp3I | CGTCTC | 2 cut(s) | 80, 126 |
| FaeI | CATG | 4 cut(s) | 223, 419, 619, 1089 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 811, 843 |
| FaqI | GGGAC | 2 cut(s) | 727, 1123 |
| FatI | CATG | 4 cut(s) | 219, 415, 615, 1085 |
| FbaI | TGATCA | 2 cut(s) | 684, 1069 |
| FblI | GTMKAC | 2 cut(s) | 78, 1115 |
| Fnu4HI | GCNGC | 6 cut(s) | 53, 92, 95, 117, 192, 1027 |
| FokI | GGATG | 2 cut(s) | 368, 819 |
| FriOI | GRGCYC | 1 cut(s) | 31 |
| Fsp4HI | GCNGC | 6 cut(s) | 53, 92, 95, 117, 192, 1027 |
| FspBI | CTAG | 2 cut(s) | 98, 654 |
| GluI | GCNGC | 6 cut(s) | 53, 92, 95, 117, 192, 1027 |
| GsaI | CCCAGC | 2 cut(s) | 110, 611 |
| GsuI | CTGGAG | 1 cut(s) | 816 |
| HaeIII | GGCC | 3 cut(s) | 29, 116, 939 |
| HapII | CCGG | 3 cut(s) | 113, 472, 499 |
| HgaI | GACGC | 2 cut(s) | 97, 108 |
| Hin1I | GRCGYC | 1 cut(s) | 89 |
| Hin1II | CATG | 4 cut(s) | 223, 419, 619, 1089 |
| HincII | GTYRAC | 4 cut(s) | 229, 373, 730, 814 |
| HindII | GTYRAC | 4 cut(s) | 229, 373, 730, 814 |
| HinfI | GANTC | 3 cut(s) | 175, 753, 960 |
| HpaI | GTTAAC | 1 cut(s) | 814 |
| HpaII | CCGG | 3 cut(s) | 113, 472, 499 |
| HphI | GGTGA | 3 cut(s) | 208, 667, 1079 |
| Hpy188I | TCNGA | 5 cut(s) | 467, 625, 806, 1036, 1143 |
| Hpy188III | TCNNGA | 8 cut(s) | 85, 154, 499, 525, 682, 762, 874, 1017 |
| Hpy99I | CGWCG | 1 cut(s) | 334 |
| HpyAV | CCTTC | 1 cut(s) | 295 |
| HpyCH4III | ACNGT | 4 cut(s) | 18, 321, 934, 1120 |
| HpyCH4IV | ACGT | 6 cut(s) | 63, 198, 266, 332, 726, 1112 |
| HpyCH4V | TGCA | 9 cut(s) | 258, 337, 405, 593, 1029, 1043, 1050, 1130, 1170 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 107, 116, 590 |
| HpyF3I | CTNAG | 3 cut(s) | 247, 1140, 1161 |
| HpySE526I | ACGT | 6 cut(s) | 63, 198, 266, 332, 726, 1112 |
| Hsp92I | GRCGYC | 1 cut(s) | 89 |
| Hsp92II | CATG | 4 cut(s) | 223, 419, 619, 1089 |
| Kpn2I | TCCGGA | 1 cut(s) | 498 |
| Ksp22I | TGATCA | 2 cut(s) | 684, 1069 |
| KspAI | GTTAAC | 1 cut(s) | 814 |
| Kzo9I | GATC | 5 cut(s) | 141, 684, 909, 1069, 1143 |
| LmnI | GCTCC | 6 cut(s) | 10, 115, 611, 665, 1023, 1036 |
| Lsp1109I | GCAGC | 2 cut(s) | 178, 1013 |
| LweI | GCATC | 1 cut(s) | 955 |
| MaeI | CTAG | 2 cut(s) | 98, 654 |
| MaeII | ACGT | 6 cut(s) | 63, 198, 266, 332, 726, 1112 |
| MalI | GATC | 5 cut(s) | 143, 686, 911, 1071, 1145 |
| MboI | GATC | 5 cut(s) | 141, 684, 909, 1069, 1143 |
| MboII | GAAGA | 3 cut(s) | 352, 540, 944 |
| MfeI | CAATTG | 1 cut(s) | 406 |
| MflI | RGATCY | 1 cut(s) | 1143 |
| MhlI | GDGCHC | 3 cut(s) | 31, 595, 670 |
| MluCI | AATT | 5 cut(s) | 406, 637, 645, 700, 918 |
| MlyI | GAGTC | 1 cut(s) | 969 |
| MnlI | CCTC | 8 cut(s) | 112, 270, 334, 689, 743, 859, 911, 950 |
| MroI | TCCGGA | 1 cut(s) | 498 |
| MseI | TTAA | 4 cut(s) | 297, 813, 917, 1082 |
| MslI | CAYNNNNRTG | 2 cut(s) | 218, 420 |
| MspI | CCGG | 3 cut(s) | 113, 472, 499 |
| MspR9I | CCNGG | 4 cut(s) | 383, 834, 840, 1148 |
| MunI | CAATTG | 1 cut(s) | 406 |
| MvaI | CCWGG | 4 cut(s) | 383, 834, 840, 1148 |
| MvnI | CGCG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 107, 116, 590 |
| NdeII | GATC | 5 cut(s) | 141, 684, 909, 1069, 1143 |
| NheI | GCTAGC | 1 cut(s) | 97 |
| NlaIII | CATG | 4 cut(s) | 223, 419, 619, 1089 |
| NlaIV | GGNNCC | 7 cut(s) | 12, 28, 29, 613, 899, 1038, 1122 |
| NspI | RCATGY | 1 cut(s) | 1089 |
| PaeR7I | CTCGAG | 1 cut(s) | 1090 |
| PfeI | GAWTC | 2 cut(s) | 175, 753 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 314, 436 |
| PfoI | TCCNGGA | 1 cut(s) | 838 |
| PinAI | ACCGGT | 1 cut(s) | 471 |
| PkrI | GCNGC | 6 cut(s) | 54, 93, 96, 118, 193, 1028 |
| PleI | GAGTC | 1 cut(s) | 968 |
| PpsI | GAGTC | 1 cut(s) | 968 |
| PpuMI | RGGWCCY | 1 cut(s) | 898 |
| Psp1406I | AACGTT | 1 cut(s) | 198 |
| Psp5II | RGGWCCY | 1 cut(s) | 898 |
| Psp6I | CCWGG | 4 cut(s) | 381, 832, 838, 1146 |
| PspFI | CCCAGC | 2 cut(s) | 106, 607 |
| PspGI | CCWGG | 4 cut(s) | 381, 832, 838, 1146 |
| PspN4I | GGNNCC | 7 cut(s) | 12, 28, 29, 613, 899, 1038, 1122 |
| PspOMI | GGGCCC | 1 cut(s) | 27 |
| PspPI | GGNCC | 5 cut(s) | 27, 28, 317, 836, 898 |
| PspPPI | RGGWCCY | 1 cut(s) | 898 |
| PspXI | VCTCGAGB | 1 cut(s) | 1090 |
| PsuI | RGATCY | 1 cut(s) | 1143 |
| RsaI | GTAC | 1 cut(s) | 134 |
| RsaNI | GTAC | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 2 cut(s) | 218, 420 |
| SaqAI | TTAA | 4 cut(s) | 297, 813, 917, 1082 |
| SatI | GCNGC | 6 cut(s) | 53, 92, 95, 117, 192, 1027 |
| Sau3AI | GATC | 5 cut(s) | 141, 684, 909, 1069, 1143 |
| Sau96I | GGNCC | 5 cut(s) | 27, 28, 317, 836, 898 |
| SchI | GAGTC | 1 cut(s) | 969 |
| ScrFI | CCNGG | 4 cut(s) | 383, 834, 840, 1148 |
| SduI | GDGCHC | 3 cut(s) | 31, 595, 670 |
| SfaNI | GCATC | 1 cut(s) | 955 |
| Sfr274I | CTCGAG | 1 cut(s) | 1090 |
| SinI | GGWCC | 3 cut(s) | 317, 836, 898 |
| SlaI | CTCGAG | 1 cut(s) | 1090 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 218, 420 |
| SmlI | CTYRAG | 1 cut(s) | 1090 |
| SmoI | CTYRAG | 1 cut(s) | 1090 |
| Sse9I | AATT | 5 cut(s) | 406, 637, 645, 700, 918 |
| SsiI | CCGC | 6 cut(s) | 5, 52, 92, 95, 117, 793 |
| SspMI | CTAG | 2 cut(s) | 98, 654 |
| StyD4I | CCNGG | 4 cut(s) | 381, 832, 838, 1146 |
| TaaI | ACNGT | 4 cut(s) | 18, 321, 934, 1120 |
| TaiI | ACGT | 6 cut(s) | 66, 201, 269, 335, 729, 1115 |
| TaqI | TCGA | 4 cut(s) | 84, 329, 963, 1091 |
| TasI | AATT | 5 cut(s) | 406, 637, 645, 700, 918 |
| TatI | WGTACW | 1 cut(s) | 132 |
| TauI | GCSGC | 4 cut(s) | 55, 94, 97, 119 |
| TfiI | GAWTC | 2 cut(s) | 175, 753 |
| Tru1I | TTAA | 4 cut(s) | 297, 813, 917, 1082 |
| Tru9I | TTAA | 4 cut(s) | 297, 813, 917, 1082 |
| TscAI | CASTG | 2 cut(s) | 714, 890 |
| TseI | GCWGC | 2 cut(s) | 191, 1026 |
| TspDTI | ATGAA | 1 cut(s) | 199 |
| TspRI | CASTG | 2 cut(s) | 714, 890 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 314, 436 |
| VneI | GTGCAC | 1 cut(s) | 591 |
| VpaK11BI | GGWCC | 3 cut(s) | 317, 836, 898 |
| XceI | RCATGY | 1 cut(s) | 1089 |
| XhoI | CTCGAG | 1 cut(s) | 1090 |
| XmiI | GTMKAC | 2 cut(s) | 78, 1115 |
| XspI | CTAG | 2 cut(s) | 98, 654 |