Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379997.1

Orthogroup ID

OG0011657

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 715

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379997.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 205 bp

tgaacattgttcttggtgtcattatttgtcttgtgttcctacatcaaaatggagctgcaattcagagcccgcatactgctcgtcaacccagacaggtgaccagctctttttaacatgctcaagcaatggaaagaacggcacatatacatatccaaatgcaagcagttctcagatccaggggttatgttctcagctttgcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

67

Amino Acids

7.28

Weight (kDa)

6.01

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53780 AT3G53780 AT3G53780
fragaria_vesca	FvH4_6g13560
malus_domestica	MD04G1130000.v1.1 MD12G1143100.v1.1
prunus_persica	Prupe.6G256700_v2.0.a1
pyrus_communis	pycom04g11830 pycom12g13780
rosa_chinensis	RchiOBHm_Chr3g0466421
rosa_laevigata	RLG00000024575
rosa_multiflora	Rmu_co8379997.1_g000002 Rmu_sc0003332.1_g000027 Rmu_sc0003480.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414480
rosa_samantha	Rh3AG128300 Rh3BG149600 Rh3DG150300
rosa_wichuraiana	Rw3G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	3 cut(s)	55, 104, 194
AluI	AGCT	3 cut(s)	55, 104, 194
AlwI	GGATC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	183, 204
BseXI	GCAGC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	182, 203
BspPI	GGATC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	70, 161
BstDEI	CTNAG	2 cut(s)	169, 190
BstEII	GGTNACC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	118
BstPI	GGTNACC	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	70, 161
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	4 cut(s)	55, 68, 104, 194
CviKI_1	RGCY	4 cut(s)	55, 68, 104, 194
DdeI	CTNAG	2 cut(s)	169, 190
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	96
EcoO65I	GGTNACC	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	1 cut(s)	118
FaiI	YATR	6 cut(s)	74, 116, 143, 145, 149, 185
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	65, 172
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	58, 159, 199
HpyF3I	CTNAG	2 cut(s)	169, 190
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	5 cut(s)	79, 102, 114, 162, 189
Lsp1109I	GCAGC	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	59
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	4 cut(s)	57, 98, 106, 196
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	175
TasI	AATT	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	96
XceI	RCATGY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.