AT3G53880

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014906
Physical Location & Seq
Forward (+)
19953117 .. 19955291
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53880.1

Sequence Viewer

Length: 948 bp
ATGGCGGACGAAATCGGATTCTTCCAACTCAACACCGGAGCAAAGATCCCATCGGTTGGTCTCGGGACATGGCAAGCTGCTCCTGGCGTCGTTGGAGACGCCGTCGCCGCCGCTGTGAAGATTGGATATCAGCATATTGATTGTGCTTCAAGATATGGCAATGAAATTGAGATTGGGAAAGTTCTGAAGAAGTTGTTTGATGATGGCGTAGTGAAGCGTGAGAAGCTGTTCATCACATCAAAAATCTGGTTGACTGATCTTGACCCTCCGGATGTACAGGACGCATTGAACAGAACTCTTCAGGATCTGCAGCTTGATTATGTTGATTTGTATCTCATGCACTGGCCTGTTCGGTTGAAGAAAGGTACTGTTGACTTTAAGCCTGAGAACATTATGCCTATCGATATTCCGAGCACATGGAAAGCAATGGAAGCACTGGTTGATTCAGGCAAGGCAAGAGCCATTGGCGTAAGTAATTTCTCTACAAAGAAACTCTCAGATCTTGTGGAGGCTGCTCGTGTTCCTCCCGCTGTAAACCAGGTGGAATGTCATCCTTCATGGCAACAACATAAGCTACATGAGTTTTGCAAGTCCAAAGGGATCCACCTCTCAGGATATTCGCCATTGGGATCTCCTGGAACAACGTGGGTGAAGGCCGATGTTTTAAAGAGTCCGGTTATTGAAATGATTGCTAAAGAAATCGGGAAGTCTCCCGCACAAACCGCGCTTCGATGGGGACTTCAAATGGGTCATAGTATACTTCCCAAAAGCACAAATGAAGGAAGAATCAGAGAGAACTTTGATGTCTTGGGATGGTCTATTCCAAAAGAAATGTTTGACAAGTTTTCCAAGATAGAGCAGGCTAGGTTAGTCCAAGGCACGTCGTTTGTTCATGAGACGTTGAGTCCTTATAAAACACTTGAAGAGCTTTGGGATGGTGAGATCTGA

Protein Analysis

315

Amino Acids

35.04

Weight (kDa)

6.46

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 19 - 285 1.1e-51 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37770 AT2G37790 AT3G53880 AT3G53880
fragaria_vesca FvH4_6g13012 FvH4_6g13012
malus_domestica MD12G1150400.v1.1
prunus_persica Prupe.6G262000_v2.0.a1
pyrus_communis pycom12g14420
rosa_chinensis RchiOBHm_Chr3g0465141
rosa_multiflora Rmu_sc0003386.1_g000011
rosa_roxburghii Rroxscaffold_6G00415210
rosa_rugosa Rorug03G0075700
rosa_samantha Rh3BG139400 Rh3DG140700
rosa_wichuraiana Rw3G011410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
AccB7I CCANNNNNTGG 1 cut(s) 56
AccI GTMKAC 1 cut(s) 757
AccII CGCG 1 cut(s) 725
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 6 cut(s) 5, 108, 111, 528, 714, 723
AclWI GGATC 5 cut(s) 40, 312, 595, 608, 637
AcuI CTGAAG 2 cut(s) 206, 284
AcyI GRCGYC 2 cut(s) 87, 99
AfaI GTAC 2 cut(s) 276, 367
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 6 cut(s) 150, 289, 358, 683, 743, 923
AhdI GACNNNNNGTC 1 cut(s) 903
AjiI CACGTC 1 cut(s) 882
AjnI CCWGG 3 cut(s) 82, 537, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 5 cut(s) 77, 226, 313, 574, 928
AluI AGCT 5 cut(s) 77, 226, 313, 574, 928
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 4 cut(s) 65, 90, 714, 890
AlwI GGATC 5 cut(s) 40, 312, 595, 608, 637
AlwNI CAGNNNCTG 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 62
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 2 cut(s) 344, 654
ApeKI GCWGC 3 cut(s) 77, 310, 512
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 727
AsuHPI GGTGA 1 cut(s) 661
AvaI CYCGRG 1 cut(s) 62
BamHI GGATCC 1 cut(s) 600
BauI CACGAG 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 64, 322, 499
BccI CCATC 5 cut(s) 58, 197, 726, 807, 929
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 3 cut(s) 84, 539, 636
BcoDI GTCTC 4 cut(s) 65, 90, 714, 890
BfaI CTAG 1 cut(s) 864
BfmI CTRYAG 1 cut(s) 308
BglII AGATCT 2 cut(s) 499, 942
BisI GCNGC 5 cut(s) 78, 108, 111, 311, 513
BlsI GCNGC 5 cut(s) 79, 109, 112, 312, 514
Bme1390I CCNGG 3 cut(s) 84, 539, 636
BmeRI GACNNNNNGTC 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 882
BmiI GGNNCC 1 cut(s) 602
BmrFI CCNGG 3 cut(s) 84, 539, 636
Bsa29I ATCGAT 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 2 cut(s) 87, 99
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 874
BsaWI WCCGGW 3 cut(s) 35, 268, 673
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 347, 441
Bse3DI GCAATG 2 cut(s) 166, 432
Bse8I GATNNNNATC 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 268
BseBI CCWGG 3 cut(s) 84, 539, 636
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 874
BseGI GGATG 4 cut(s) 277, 550, 818, 940
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMI GCAATG 2 cut(s) 166, 432
BseMII CTCAG 3 cut(s) 375, 510, 624
BseNI ACTGG 2 cut(s) 347, 441
BseXI GCAGC 3 cut(s) 64, 322, 499
Bsh1236I CGCG 1 cut(s) 725
BshFI GGCC 2 cut(s) 346, 656
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 3 cut(s) 36, 269, 674
BslFI GGGAC 2 cut(s) 79, 750
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 4 cut(s) 65, 90, 714, 890
BsmBI CGTCTC 2 cut(s) 90, 890
BsmFI GGGAC 2 cut(s) 79, 750
BsnI GGCC 2 cut(s) 346, 656
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 416
Bsp13I TCCGGA 1 cut(s) 268
Bsp1407I TGTACA 1 cut(s) 274
Bsp143I GATC 7 cut(s) 45, 256, 304, 499, 600, 629, 942
BspACI CCGC 6 cut(s) 5, 108, 111, 528, 714, 723
BspANI GGCC 2 cut(s) 346, 656
BspCNI CTCAG 3 cut(s) 376, 509, 623
BspDI ATCGAT 1 cut(s) 402
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 1 cut(s) 725
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 1 cut(s) 602
BspMAI CTGCAG 1 cut(s) 312
BspPI GGATC 5 cut(s) 40, 312, 595, 608, 637
BspQI GCTCTTC 1 cut(s) 918
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 2 cut(s) 166, 432
BsrGI TGTACA 1 cut(s) 274
BsrI ACTGG 2 cut(s) 347, 441
BssECI CCNNGG 1 cut(s) 874
BssMI GATC 7 cut(s) 45, 256, 304, 499, 600, 629, 942
BssNAI GTATAC 1 cut(s) 758
BssNI GRCGYC 2 cut(s) 87, 99
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 874
Bst1107I GTATAC 1 cut(s) 758
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 3 cut(s) 84, 539, 636
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 2 cut(s) 303, 918
BstACI GRCGYC 2 cut(s) 87, 99
BstAUI TGTACA 1 cut(s) 274
BstC8I GCNNGC 2 cut(s) 75, 861
BstDEI CTNAG 3 cut(s) 384, 496, 610
BstF5I GGATG 4 cut(s) 277, 550, 818, 940
BstFNI CGCG 1 cut(s) 725
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 7 cut(s) 48, 259, 307, 502, 603, 632, 945
BstMAI GTCTC 4 cut(s) 65, 90, 714, 890
BstMBI GATC 7 cut(s) 45, 256, 304, 499, 600, 629, 942
BstMWI GCNNNNNNNGC 4 cut(s) 107, 223, 431, 722
BstNI CCWGG 3 cut(s) 84, 539, 636
BstSCI CCNGG 3 cut(s) 82, 537, 634
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 1 cut(s) 725
BstV1I GCAGC 3 cut(s) 64, 322, 499
BstX2I RGATCY 6 cut(s) 45, 304, 499, 600, 629, 942
BstYI RGATCY 6 cut(s) 45, 304, 499, 600, 629, 942
BstZ17I GTATAC 1 cut(s) 758
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 2 cut(s) 346, 656
BsuTUI ATCGAT 1 cut(s) 402
BtrI CACGTC 1 cut(s) 882
BtsCI GGATG 4 cut(s) 277, 550, 818, 940
BtsIMutI CAGTG 2 cut(s) 340, 434
Cac8I GCNNGC 2 cut(s) 75, 861
CaiI CAGNNNCTG 1 cut(s) 307
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 727
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 3 cut(s) 76, 107, 290
CsiI ACCWGGT 1 cut(s) 537
Csp6I GTAC 2 cut(s) 275, 366
CviAII CATG 6 cut(s) 69, 337, 417, 558, 578, 893
CviQI GTAC 2 cut(s) 275, 366
DdeI CTNAG 3 cut(s) 384, 496, 610
DpnI GATC 7 cut(s) 47, 258, 306, 501, 602, 631, 944
DpnII GATC 7 cut(s) 45, 256, 304, 499, 600, 629, 942
DraI TTTAAA 1 cut(s) 666
DriI GACNNNNNGTC 1 cut(s) 903
Eam1104I CTCTTC 2 cut(s) 303, 918
Eam1105I GACNNNNNGTC 1 cut(s) 903
EarI CTCTTC 2 cut(s) 303, 918
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 874
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 128
Eco57I CTGAAG 2 cut(s) 206, 284
Eco88I CYCGRG 1 cut(s) 62
EcoRII CCWGG 3 cut(s) 82, 537, 634
EcoRV GATATC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 874
ErhI CCWWGG 1 cut(s) 874
Esp3I CGTCTC 2 cut(s) 90, 890
FaeI CATG 6 cut(s) 72, 340, 420, 561, 581, 896
FaqI GGGAC 2 cut(s) 79, 750
FatI CATG 6 cut(s) 68, 336, 416, 557, 577, 892
FauI CCCGC 2 cut(s) 535, 721
FblI GTMKAC 1 cut(s) 757
Fnu4HI GCNGC 5 cut(s) 78, 108, 111, 311, 513
FokI GGATG 3 cut(s) 284, 537, 825
Fsp4HI GCNGC 5 cut(s) 78, 108, 111, 311, 513
FspBI CTAG 1 cut(s) 864
GlaI GCGC 1 cut(s) 726
GluI GCNGC 5 cut(s) 78, 108, 111, 311, 513
HaeIII GGCC 2 cut(s) 346, 656
HapII CCGG 3 cut(s) 36, 269, 674
HgaI GACGC 3 cut(s) 76, 107, 290
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 2 cut(s) 87, 99
Hin1II CATG 6 cut(s) 72, 340, 420, 561, 581, 896
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HincII GTYRAC 2 cut(s) 252, 373
HindII GTYRAC 2 cut(s) 252, 373
HinfI GANTC 5 cut(s) 18, 443, 670, 786, 904
HpaII CCGG 3 cut(s) 36, 269, 674
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 4 cut(s) 252, 373, 535, 758
Hpy188I TCNGA 6 cut(s) 17, 186, 411, 499, 791, 947
Hpy188III TCNNGA 8 cut(s) 64, 150, 260, 269, 302, 612, 703, 893
Hpy8I GTNNAC 4 cut(s) 252, 373, 535, 758
Hpy99I CGWCG 3 cut(s) 92, 107, 886
HpyAV CCTTC 3 cut(s) 564, 646, 773
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 3 cut(s) 644, 881, 899
HpyCH4V TGCA 3 cut(s) 310, 340, 588
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 223, 431, 722
HpyF3I CTNAG 3 cut(s) 384, 496, 610
HpySE526I ACGT 3 cut(s) 644, 881, 899
Hsp92I GRCGYC 2 cut(s) 87, 99
Hsp92II CATG 6 cut(s) 72, 340, 420, 561, 581, 896
HspAI GCGC 1 cut(s) 725
Kpn2I TCCGGA 1 cut(s) 268
Kzo9I GATC 7 cut(s) 45, 256, 304, 499, 600, 629, 942
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 2 cut(s) 38, 85
Lsp1109I GCAGC 3 cut(s) 64, 322, 499
MabI ACCWGGT 1 cut(s) 537
MaeI CTAG 1 cut(s) 864
MaeII ACGT 3 cut(s) 644, 881, 899
MalI GATC 7 cut(s) 47, 258, 306, 501, 602, 631, 944
MboI GATC 7 cut(s) 45, 256, 304, 499, 600, 629, 942
MboII GAAGA 7 cut(s) 13, 130, 199, 290, 370, 795, 935
MflI RGATCY 6 cut(s) 45, 304, 499, 600, 629, 942
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 2 cut(s) 165, 475
MlyI GAGTC 2 cut(s) 679, 913
MmeI TCCRAC 2 cut(s) 49, 73
MnlI CCTC 4 cut(s) 276, 502, 534, 617
MroI TCCGGA 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 2 cut(s) 378, 665
MspA1I CMGCKG 2 cut(s) 113, 530
MspI CCGG 3 cut(s) 36, 269, 674
MspR9I CCNGG 3 cut(s) 84, 539, 636
MvaI CCWGG 3 cut(s) 84, 539, 636
MvnI CGCG 1 cut(s) 725
MwoI GCNNNNNNNGC 4 cut(s) 107, 223, 431, 722
NdeII GATC 7 cut(s) 45, 256, 304, 499, 600, 629, 942
NlaIII CATG 6 cut(s) 72, 340, 420, 561, 581, 896
NlaIV GGNNCC 1 cut(s) 602
PagI TCATGA 1 cut(s) 892
PciSI GCTCTTC 1 cut(s) 918
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 18, 443, 786
PflFI GACNNNGTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 56
PfoI TCCNGGA 1 cut(s) 634
PkrI GCNGC 5 cut(s) 79, 109, 112, 312, 514
PleI GAGTC 2 cut(s) 678, 912
PpsI GAGTC 2 cut(s) 678, 912
PsiI TTATAA 1 cut(s) 912
Psp6I CCWGG 3 cut(s) 82, 537, 634
PspGI CCWGG 3 cut(s) 82, 537, 634
PspN4I GGNNCC 1 cut(s) 602
PstI CTGCAG 1 cut(s) 312
PstNI CAGNNNCTG 1 cut(s) 307
PsuI RGATCY 6 cut(s) 45, 304, 499, 600, 629, 942
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 2 cut(s) 276, 367
RsaNI GTAC 2 cut(s) 275, 366
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 2 cut(s) 378, 665
SatI GCNGC 5 cut(s) 78, 108, 111, 311, 513
Sau3AI GATC 7 cut(s) 45, 256, 304, 499, 600, 629, 942
SchI GAGTC 2 cut(s) 679, 913
ScrFI CCNGG 3 cut(s) 84, 539, 636
SduI GDGCHC 1 cut(s) 416
SexAI ACCWGGT 1 cut(s) 537
SfcI CTRYAG 1 cut(s) 308
Sse9I AATT 2 cut(s) 165, 475
SsiI CCGC 6 cut(s) 5, 108, 111, 528, 714, 723
SspMI CTAG 1 cut(s) 864
StyD4I CCNGG 3 cut(s) 82, 537, 634
StyI CCWWGG 1 cut(s) 874
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 3 cut(s) 647, 884, 902
TaqI TCGA 2 cut(s) 402, 730
TasI AATT 2 cut(s) 165, 475
TatI WGTACW 1 cut(s) 274
TauI GCSGC 2 cut(s) 110, 113
TfiI GAWTC 3 cut(s) 18, 443, 786
Tru1I TTAA 2 cut(s) 378, 665
Tru9I TTAA 2 cut(s) 378, 665
TscAI CASTG 2 cut(s) 347, 441
TseI GCWGC 3 cut(s) 77, 310, 512
TspDTI ATGAA 5 cut(s) 177, 220, 546, 792, 881
TspRI CASTG 2 cut(s) 347, 441
Tth111I GACNNNGTC 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 757
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.