Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014906

Physical Location & Seq

Genomic Coordinates Forward (+)

25229207 .. 25231927

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGGACGATATTGGTTCGTTTGAGTTAAACACCGGAGCGAGGATCCCTTCGTTAGGGTTAGGGACCTGGCAATCAAGCCCTGGCCTCGTCGGCGACGCCGTCGCCACCGCTGTCAAGGCAGGATATCGCCATATTGATTGTGCTCAACGCTATGGCAATGAGAAGGAGATTGGTTTGGTTCTGAAGAAGCTGTTTGAAGACGGTGTGGTGAATCGCGAGGATTTGTGGATCACATCCAAACTCTGGTGTACCGATCATGCGCCAGAAGATGTGTTAGAGGCATTGGACAGGACTCTGCGAGACTTGCAGCTTGATTATGTTGACTTGTATCTTATACATTGGCCAGTTCGGTTGAAGAAGGGGTCAGTAAGTTTTGCTCCTGAAAACCTTGTTGAACCAGATATCCCTTGCACTTGGAGAGCCATGGAAACTCTCTATGATTCGGGTAAGGCTCGAGCTATTGGTGTGAGCAATTTTTCAACAAAGAAGCTCTCTGACTTGCTGGATGTGGCACGTGTTCCTCCTGCTGTTGTCCAAGTGGAGTGTCATCCTTCATGGCAGCAAGCCAAGCTGCATTCTTTCTGCAAATCCAAGGGAATTCACGTTTCGGGCTATTCACCACTGGGTTCTCCTGGCACAACATGGATCAAAGGTGATGTCCTTCAGAATCCGATTCTTCACATGGTCGCAGAGAAACTAAGGAAAACCCCTGCACAAGTTGCTCTTCGATGGGGACTGCAAATGGGTCATAGTGCTCTTCCTAAGAGTACTAATGAAGCAAGGATCAAGGAGAACTCTGACGTCTTTGGCTGGTCTATCCCGGAGGACTTGTTAGCTAAGCTTTCGGAAATTGAGCAGGCAAGACTGGTCAGAGGGACGAACTTTGTTCATGATACTTTTGGTCCCTACAGGAGTGTTGAGGAGTTGTGGGATGGTGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

316

Amino Acids

35.03

Weight (kDa)

5.88

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770 AT2G37790 AT3G53880 AT3G53880
fragaria_vesca	FvH4_6g13012 FvH4_6g13012
malus_domestica	MD12G1150400.v1.1
prunus_persica	Prupe.6G262000_v2.0.a1
pyrus_communis	pycom12g14420
rosa_chinensis	RchiOBHm_Chr3g0465141
rosa_multiflora	Rmu_sc0003386.1_g000011
rosa_roxburghii	Rroxscaffold_6G00415210
rosa_rugosa	Rorug03G0075700
rosa_samantha	Rh3BG139400 Rh3DG140700
rosa_wichuraiana	Rw3G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	807
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	5, 111
AclWI	GGATC	5 cut(s)	40, 53, 239, 656, 794
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	600, 942
AcuI	CTGAAG	2 cut(s)	206, 650
AcvI	CACGTG	1 cut(s)	518
AcyI	GRCGYC	2 cut(s)	99, 804
AfaI	GTAC	2 cut(s)	253, 772
AfiI	CCNNNNNNNGG	3 cut(s)	42, 56, 246
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	4 cut(s)	200, 358, 398, 483
AjnI	CCWGG	3 cut(s)	68, 82, 634
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	7 cut(s)	193, 313, 461, 493, 574, 839, 844
AluI	AGCT	7 cut(s)	193, 313, 461, 493, 574, 839, 844
Alw21I	GWGCWC	2 cut(s)	148, 760
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	5 cut(s)	40, 53, 239, 656, 794
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	2 cut(s)	85, 344
ApeKI	GCWGC	3 cut(s)	310, 562, 574
ApoI	RAATTY	2 cut(s)	600, 942
ArsI	GACNNNNNNTTYG	2 cut(s)	645, 677
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	66, 905
AsuC2I	CCSGG	1 cut(s)	824
AsuHPI	GGTGA	3 cut(s)	223, 612, 668
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	2 cut(s)	66, 905
BalI	TGGCCA	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	45
BbrPI	CACGTG	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	148, 760
BbvI	GCAGC	3 cut(s)	322, 561, 574
BccI	CCATC	2 cut(s)	726, 929
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	3 cut(s)	70, 84, 636
BcnI	CCSGG	1 cut(s)	824
BcoDI	GTCTC	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	910
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	311, 563, 575
BlpI	GCTNAGC	1 cut(s)	840
BlsI	GCNGC	3 cut(s)	312, 564, 576
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	4 cut(s)	70, 84, 636, 824
Bme18I	GGWCC	2 cut(s)	66, 905
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	2 cut(s)	66, 905
BmiI	GGNNCC	3 cut(s)	47, 67, 907
BmrFI	CCNGG	4 cut(s)	70, 84, 636, 824
BmrI	ACTGGG	1 cut(s)	635
BmuI	ACTGGG	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	840
BpuMI	CCSGG	1 cut(s)	824
BsaAI	YACGTR	1 cut(s)	518
BsaHI	GRCGYC	2 cut(s)	99, 804
BsaJI	CCNNGG	3 cut(s)	82, 426, 594
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 56, 246
Bse1I	ACTGG	3 cut(s)	347, 630, 873
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	3 cut(s)	70, 84, 636
BseDI	CCNNGG	3 cut(s)	82, 426, 594
BseGI	GGATG	4 cut(s)	236, 514, 550, 940
BseLI	CCNNNNNNNGG	3 cut(s)	42, 56, 246
BseMI	GCAATG	1 cut(s)	166
BseNI	ACTGG	3 cut(s)	347, 630, 873
BseRI	GAGGAG	1 cut(s)	938
BseXI	GCAGC	3 cut(s)	322, 561, 574
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	87, 346
BsiHKAI	GWGCWC	2 cut(s)	148, 760
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	36, 824
BslFI	GGGAC	4 cut(s)	79, 750, 891, 892
BslI	CCNNNNNNNGG	3 cut(s)	42, 56, 246
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	4 cut(s)	79, 750, 891, 892
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	87, 346
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	148, 760
Bsp143I	GATC	5 cut(s)	45, 231, 256, 648, 786
Bsp1720I	GCTNAGC	1 cut(s)	840
Bsp19I	CCATGG	1 cut(s)	426
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	2 cut(s)	5, 111
BspANI	GGCC	2 cut(s)	87, 346
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	3 cut(s)	47, 67, 907
BspPI	GGATC	5 cut(s)	40, 53, 239, 656, 794
BspQI	GCTCTTC	2 cut(s)	732, 765
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	3 cut(s)	347, 630, 873
BssECI	CCNNGG	3 cut(s)	82, 426, 594
BssMI	GATC	5 cut(s)	45, 231, 256, 648, 786
BssNI	GRCGYC	2 cut(s)	99, 804
BssT1I	CCWWGG	2 cut(s)	426, 594
Bst2UI	CCWGG	3 cut(s)	70, 84, 636
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	732, 765
BstACI	GRCGYC	2 cut(s)	99, 804
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	567, 861
BstDEI	CTNAG	3 cut(s)	701, 765, 840
BstDSI	CCRYGG	1 cut(s)	426
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	236, 514, 550, 940
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	5 cut(s)	48, 234, 259, 651, 789
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	5 cut(s)	45, 231, 256, 648, 786
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 119, 307, 571, 722
BstNI	CCWGG	3 cut(s)	70, 84, 636
BstSCI	CCNGG	4 cut(s)	68, 82, 634, 822
BstSFI	CTRYAG	1 cut(s)	910
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	322, 561, 574
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	87, 346
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	236, 514, 550, 940
BtsIMutI	CAGTG	1 cut(s)	623
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	567, 861
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	66, 905
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	252, 771
CviAII	CATG	6 cut(s)	260, 427, 558, 645, 685, 893
CviQI	GTAC	2 cut(s)	252, 771
DdeI	CTNAG	3 cut(s)	701, 765, 840
DpnI	GATC	5 cut(s)	47, 233, 258, 650, 788
DpnII	GATC	5 cut(s)	45, 231, 256, 648, 786
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	732, 765
EarI	CTCTTC	2 cut(s)	732, 765
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	426, 594
Eco32I	GATATC	2 cut(s)	128, 406
Eco47I	GGWCC	2 cut(s)	66, 905
Eco57I	CTGAAG	2 cut(s)	206, 650
Eco72I	CACGTG	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	3 cut(s)	68, 82, 634
EcoRV	GATATC	2 cut(s)	128, 406
EcoT14I	CCWWGG	2 cut(s)	426, 594
ErhI	CCWWGG	2 cut(s)	426, 594
FaeI	CATG	6 cut(s)	263, 430, 561, 648, 688, 896
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	4 cut(s)	79, 750, 891, 892
FatI	CATG	6 cut(s)	259, 426, 557, 644, 684, 892
Fnu4HI	GCNGC	3 cut(s)	311, 563, 575
FokI	GGATG	3 cut(s)	223, 521, 537
Fsp4HI	GCNGC	3 cut(s)	311, 563, 575
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	311, 563, 575
HaeIII	GGCC	2 cut(s)	87, 346
HapII	CCGG	2 cut(s)	36, 824
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	2 cut(s)	99, 804
Hin1II	CATG	6 cut(s)	263, 430, 561, 648, 688, 896
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	5 cut(s)	214, 295, 443, 670, 676
HpaII	CCGG	2 cut(s)	36, 824
HphI	GGTGA	3 cut(s)	223, 612, 668
Hpy166II	GTNNAC	2 cut(s)	252, 325
Hpy188I	TCNGA	7 cut(s)	186, 499, 669, 675, 802, 850, 875
Hpy188III	TCNNGA	3 cut(s)	218, 383, 893
Hpy8I	GTNNAC	2 cut(s)	252, 325
Hpy99I	CGWCG	3 cut(s)	95, 101, 107
HpyAV	CCTTC	5 cut(s)	60, 160, 355, 564, 674
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	3 cut(s)	517, 606, 804
HpyCH4V	TGCA	6 cut(s)	310, 414, 577, 588, 716, 742
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 119, 307, 571, 722
HpyF3I	CTNAG	3 cut(s)	701, 765, 840
HpySE526I	ACGT	3 cut(s)	517, 606, 804
Hsp92I	GRCGYC	2 cut(s)	99, 804
Hsp92II	CATG	6 cut(s)	263, 430, 561, 648, 688, 896
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	5 cut(s)	45, 231, 256, 648, 786
LguI	GCTCTTC	2 cut(s)	732, 765
LmnI	GCTCC	2 cut(s)	38, 385
Lsp1109I	GCAGC	3 cut(s)	322, 561, 574
MaeII	ACGT	3 cut(s)	517, 606, 804
MalI	GATC	5 cut(s)	47, 233, 258, 650, 788
MboI	GATC	5 cut(s)	45, 231, 256, 648, 786
MboII	GAAGA	7 cut(s)	199, 212, 281, 370, 671, 719, 752
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	148, 760
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	4 cut(s)	475, 600, 852, 942
MluNI	TGGCCA	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	8 cut(s)	36, 98, 214, 274, 534, 820, 869, 916
Mox20I	TGGCCA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	2 cut(s)	36, 824
MspR9I	CCNGG	4 cut(s)	70, 84, 636, 824
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	3 cut(s)	70, 84, 636
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	5 cut(s)	93, 119, 307, 571, 722
NciI	CCSGG	1 cut(s)	824
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	5 cut(s)	45, 231, 256, 648, 786
NlaIII	CATG	6 cut(s)	263, 430, 561, 648, 688, 896
NlaIV	GGNNCC	3 cut(s)	47, 67, 907
NruI	TCGCGA	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	456
PagI	TCATGA	1 cut(s)	892
PciSI	GCTCTTC	2 cut(s)	732, 765
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	4 cut(s)	214, 443, 670, 676
PflFI	GACNNNGTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	822
PkrI	GCNGC	3 cut(s)	312, 564, 576
PleI	GAGTC	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	518
PmlI	CACGTG	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	68, 82, 634
PspCI	CACGTG	1 cut(s)	518
PspGI	CCWGG	3 cut(s)	68, 82, 634
PspN4I	GGNNCC	3 cut(s)	47, 67, 907
PspPI	GGNCC	2 cut(s)	66, 905
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	101
RruI	TCGCGA	1 cut(s)	219
RsaI	GTAC	2 cut(s)	253, 772
RsaNI	GTAC	2 cut(s)	252, 771
SapI	GCTCTTC	2 cut(s)	732, 765
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	311, 563, 575
Sau3AI	GATC	5 cut(s)	45, 231, 256, 648, 786
Sau96I	GGNCC	2 cut(s)	66, 905
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	4 cut(s)	70, 84, 636, 824
SduI	GDGCHC	2 cut(s)	148, 760
SfcI	CTRYAG	1 cut(s)	910
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	66, 905
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	4 cut(s)	475, 600, 852, 942
SsiI	CCGC	2 cut(s)	5, 111
StyD4I	CCNGG	4 cut(s)	68, 82, 634, 822
StyI	CCWWGG	2 cut(s)	426, 594
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	3 cut(s)	520, 609, 807
TaqI	TCGA	2 cut(s)	457, 730
TasI	AATT	4 cut(s)	475, 600, 852, 942
TatI	WGTACW	1 cut(s)	770
TfiI	GAWTC	4 cut(s)	214, 443, 670, 676
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	630
TseI	GCWGC	3 cut(s)	310, 562, 574
TspDTI	ATGAA	3 cut(s)	546, 792, 881
TspRI	CASTG	1 cut(s)	630
Tth111I	GACNNNGTC	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	66, 905
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	600, 942
XhoI	CTCGAG	1 cut(s)	456
ZraI	GACGTC	1 cut(s)	805
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.