Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014906

Physical Location & Seq

Genomic Coordinates Reverse (-)

12013991 .. 12015016

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG140700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAAGATGCATTGGCCAGTGCGGTTGAAGAAGGGCTCAGTAGATTTTAGTCCCGAAAACCTTATACAACCAGATATCCCTGCCACATGGAGAGCAATGGAATCTCTCTATGATTTGGGTAAGGCTCGAGCTATTGGTGTGAGCAATTTCTCTACAAAGAAGCTGTCAGATTTGCTGGATGTGGCACGCGTTCTTCCTGCTGTTAACCAAGTGGAGTGTCATCCTTCATGGCAGCAGGCCAAGCTACATTTATTCTGTAAATCCAAGGGAGTTCATGTATCTGGATATTCACCGCTTGGTTCTCCTGGCACCACATGGATCAAAAGTGACGTCCTTGAGAATCCGGTTCTGAACACGGTTGCAGAGAAACTAGGGAAAACTGCTGCACAAGTTTCTCTTCGATGGGGTCTGCAAACGGGTCATAGTGTTCTTCCAAAGAGTACTAATGAAGCAAGGATCAAGCAGAACTTCGATGTCTTTGGCTGGTCTATCCCAGAGGACTTGTTCACCAAGCTTTCTCAAATTGAGCAGGCTAGACTGGTAAGAGGGACTTCATTTGTTCATGACACTTTTGGTCCCTACAGGAGTGTTGAGGAATTGTGGGATGGCGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

8.85

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	3 - 175	1.9e-24	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770 AT2G37790 AT3G53880 AT3G53880
fragaria_vesca	FvH4_6g13012 FvH4_6g13012
malus_domestica	MD12G1150400.v1.1
prunus_persica	Prupe.6G262000_v2.0.a1
pyrus_communis	pycom12g14420
rosa_chinensis	RchiOBHm_Chr3g0465141
rosa_multiflora	Rmu_sc0003386.1_g000011
rosa_roxburghii	Rroxscaffold_6G00415210
rosa_rugosa	Rorug03G0075700
rosa_samantha	Rh3BG139400 Rh3DG140700
rosa_wichuraiana	Rw3G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	308
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	22, 293
AclWI	GGATC	2 cut(s)	326, 464
AcoI	YGGCCR	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	442
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	4 cut(s)	131, 163, 244, 514
AluI	AGCT	4 cut(s)	131, 163, 244, 514
AlwI	GGATC	2 cut(s)	326, 464
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	14, 237
ApeKI	GCWGC	2 cut(s)	232, 383
ArsI	GACNNNNNNTTYG	4 cut(s)	149, 181, 315, 347
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	2 cut(s)	282, 499
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	244, 370
BccI	CCATC	2 cut(s)	396, 599
BciT130I	CCWGG	1 cut(s)	306
BfaI	CTAG	3 cut(s)	371, 534, 616
BfmI	CTRYAG	1 cut(s)	580
BisI	GCNGC	2 cut(s)	233, 384
BlsI	GCNGC	2 cut(s)	234, 385
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	310, 577
BmrFI	CCNGG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse1I	ACTGG	2 cut(s)	17, 543
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	3 cut(s)	184, 220, 610
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	17, 543
BseXI	GCAGC	2 cut(s)	244, 370
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	16, 239
BshNI	GGYRCC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	3 cut(s)	36, 561, 562
BsmFI	GGGAC	3 cut(s)	36, 561, 562
BsnI	GGCC	2 cut(s)	16, 239
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	318, 456
BspACI	CCGC	2 cut(s)	22, 293
BspANI	GGCC	2 cut(s)	16, 239
BspCNI	CTCAG	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	310, 577
BspPI	GGATC	2 cut(s)	326, 464
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	17, 543
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	318, 456
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	3 cut(s)	187, 237, 531
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	184, 220, 610
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	321, 459
BstMBI	GATC	2 cut(s)	318, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	580
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	244, 370
BsuRI	GGCC	2 cut(s)	16, 239
BtsCI	GGATG	3 cut(s)	184, 220, 610
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	187, 237, 531
CciI	TCATGA	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	5 cut(s)	87, 228, 275, 315, 563
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	2 cut(s)	320, 458
DpnII	GATC	2 cut(s)	318, 456
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	5 cut(s)	90, 231, 278, 318, 566
FaiI	YATR	8 cut(s)	65, 88, 111, 229, 276, 316, 423, 564
FalI	AAGNNNNNCTT	6 cut(s)	381, 413, 452, 484, 535, 567
FaqI	GGGAC	3 cut(s)	36, 561, 562
FatI	CATG	5 cut(s)	86, 227, 274, 314, 562
Fnu4HI	GCNGC	2 cut(s)	233, 384
FokI	GGATG	2 cut(s)	191, 207
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	233, 384
FspBI	CTAG	3 cut(s)	371, 534, 616
GluI	GCNGC	2 cut(s)	233, 384
HaeIII	GGCC	2 cut(s)	16, 239
HapII	CCGG	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	90, 231, 278, 318, 566
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	2 cut(s)	101, 340
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	282, 499
Hpy166II	GTNNAC	2 cut(s)	205, 507
Hpy188I	TCNGA	2 cut(s)	169, 351
Hpy188III	TCNNGA	3 cut(s)	53, 282, 563
Hpy8I	GTNNAC	2 cut(s)	205, 507
HpyAV	CCTTC	2 cut(s)	25, 234
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	10, 362, 386, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	90, 231, 278, 318, 566
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	318, 456
Lsp1109I	GCAGC	2 cut(s)	244, 370
MaeI	CTAG	3 cut(s)	371, 534, 616
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	320, 458
MboI	GATC	2 cut(s)	318, 456
MboII	GAAGA	5 cut(s)	16, 40, 185, 389, 422
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	16
MluCI	AATT	3 cut(s)	145, 522, 596
MluI	ACGCGT	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	16
MnlI	CCTC	3 cut(s)	490, 539, 586
Mox20I	TGGCCA	1 cut(s)	16
Mph1103I	ATGCAT	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	16
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	2 cut(s)	318, 456
NlaIII	CATG	5 cut(s)	90, 231, 278, 318, 566
NlaIV	GGNNCC	2 cut(s)	310, 577
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	126
PagI	TCATGA	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	101, 340
PkrI	GCNGC	2 cut(s)	234, 385
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	310, 577
PspPI	GGNCC	1 cut(s)	575
PspXI	VCTCGAGB	1 cut(s)	126
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	233, 384
Sau3AI	GATC	2 cut(s)	318, 456
Sau96I	GGNCC	1 cut(s)	575
ScaI	AGTACT	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	63, 133, 165, 246, 333, 516
SfcI	CTRYAG	1 cut(s)	580
Sfr274I	CTCGAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	126, 335
SmoI	CTYRAG	2 cut(s)	126, 335
Sse9I	AATT	3 cut(s)	145, 522, 596
SsiI	CCGC	2 cut(s)	22, 293
SspMI	CTAG	3 cut(s)	371, 534, 616
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	127, 400, 471
TasI	AATT	3 cut(s)	145, 522, 596
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	101, 340
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	232, 383
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	6 cut(s)	17, 216, 263, 462, 543, 551
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	126
XspI	CTAG	3 cut(s)	371, 534, 616
ZraI	GACGTC	1 cut(s)	331
ZrmI	AGTACT	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.