Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003386.1

Orthogroup ID

OG0014906

Physical Location & Seq

Genomic Coordinates Forward (+)

33530 .. 35751

Gene Structure 2222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003386.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggccaatgaaattcagttctttgagttgaacaccggagccaagatcccgtctttgggattagggacctggcaatccagccctggtgtcgtcggcgacgccgttgccaccgccgtcaaggcagggtatcgccacattgattgtgctcaacgctatggaaatgaaaaggagattggtttggttctgaagaagttgtttgacgatggtgtggtgaagcgcggggatttgtggattacttccaaactctggtgtactgatcatgccccagaagacgtaacagtggcattggaaaagactttgagagacttgcagctggattatgttgacttgtaccttatgcattggccggtacggttgaagaagggctcagtagattttagtcccgaaaaccttgtacaaccagatatccctgccacatggagagcaatggaatctctctatgatttgggtaaggctcgagctattggtgtgagcaatttctctacaaagaagctgtcagatttgctggatgtggcacgcgttcctcctgctgttaaccaagtggagtgccatccttcatggcagcaggccaagctacatttattctgtaaatccaagggagttcatgtatctggatattcaccgcttggttctcctggcaccacatggatcaaaagtgacgtccttgagaatcctgttctgaacacggttgcagagaaactagggaaaactgctgcacaagtttctcttcgatggggtctgcaaacgggtcatagtgttcttccaaagagtactaatgaagcaaggatcaagcagaacttcgatgtcttcggctggtctatcccagaggacttgttcaccaagctttctcaaattgagcaggctagactggtaagagggacttcatttgttcatgacacttttggtccctacaggagtgttgaggaattgtgggatggcgaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

315

Amino Acids

35.02

Weight (kDa)

6.46

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770 AT2G37790 AT3G53880 AT3G53880
fragaria_vesca	FvH4_6g13012 FvH4_6g13012
malus_domestica	MD12G1150400.v1.1
prunus_persica	Prupe.6G262000_v2.0.a1
pyrus_communis	pycom12g14420
rosa_chinensis	RchiOBHm_Chr3g0465141
rosa_multiflora	Rmu_sc0003386.1_g000011
rosa_roxburghii	Rroxscaffold_6G00415210
rosa_rugosa	Rorug03G0075700
rosa_samantha	Rh3BG139400 Rh3DG140700
rosa_wichuraiana	Rw3G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	2 cut(s)	219, 519
AciI	CCGC	3 cut(s)	111, 219, 623
AclWI	GGATC	3 cut(s)	40, 656, 794
AcoI	YGGCCR	2 cut(s)	3, 344
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	2 cut(s)	99, 660
AfaI	GTAC	5 cut(s)	253, 332, 351, 396, 772
AfiI	CCNNNNNNNGG	3 cut(s)	55, 56, 246
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	31, 358
AjnI	CCWGG	3 cut(s)	68, 82, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	5 cut(s)	313, 461, 493, 574, 844
AluI	AGCT	5 cut(s)	313, 461, 493, 574, 844
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	3 cut(s)	40, 656, 794
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	3 cut(s)	3, 344, 567
ApeKI	GCWGC	3 cut(s)	310, 562, 713
ApoI	RAATTY	1 cut(s)	12
ArsI	GACNNNNNNTTYG	4 cut(s)	479, 511, 645, 677
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	66, 905
AsuHPI	GGTGA	3 cut(s)	223, 612, 829
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	2 cut(s)	66, 905
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	276, 799
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	322, 574, 700
BccI	CCATC	4 cut(s)	197, 558, 726, 929
BceAI	ACGGC	2 cut(s)	86, 98
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	3 cut(s)	70, 84, 636
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	3 cut(s)	701, 864, 946
BfmI	CTRYAG	1 cut(s)	910
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	311, 563, 714
BlsI	GCNGC	3 cut(s)	312, 564, 715
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	3 cut(s)	70, 84, 636
Bme18I	GGWCC	2 cut(s)	66, 905
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	2 cut(s)	66, 905
BmiI	GGNNCC	4 cut(s)	40, 67, 640, 907
BmrFI	CCNGG	3 cut(s)	70, 84, 636
BpiI	GAAGAC	2 cut(s)	276, 799
BpuEI	CTTGAG	1 cut(s)	686
BsaHI	GRCGYC	2 cut(s)	99, 660
BsaJI	CCNNGG	2 cut(s)	82, 594
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 56, 246
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	873
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	70, 84, 636
BseDI	CCNNGG	2 cut(s)	82, 594
BseGI	GGATG	3 cut(s)	514, 550, 940
BseLI	CCNNNNNNNGG	3 cut(s)	55, 56, 246
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	873
BseXI	GCAGC	3 cut(s)	322, 574, 700
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	2 cut(s)	219, 519
BshFI	GGCC	3 cut(s)	5, 346, 569
BshNI	GGYRCC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	36, 347
BslFI	GGGAC	4 cut(s)	79, 366, 891, 892
BslI	CCNNNNNNNGG	3 cut(s)	55, 56, 246
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	4 cut(s)	79, 366, 891, 892
BsnI	GGCC	3 cut(s)	5, 346, 569
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	148, 368
Bsp1407I	TGTACA	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	45, 256, 648, 786
BspACI	CCGC	3 cut(s)	111, 219, 623
BspANI	GGCC	3 cut(s)	5, 346, 569
BspCNI	CTCAG	1 cut(s)	380
BspFNI	CGCG	2 cut(s)	219, 519
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	4 cut(s)	40, 67, 640, 907
BspPI	GGATC	3 cut(s)	40, 656, 794
BspT107I	GGYRCC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	873
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	82, 594
BssMI	GATC	4 cut(s)	45, 256, 648, 786
BssNI	GRCGYC	2 cut(s)	99, 660
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	70, 84, 636
Bst4CI	ACNGT	3 cut(s)	280, 354, 688
Bst6I	CTCTTC	1 cut(s)	732
BstACI	GRCGYC	2 cut(s)	99, 660
BstAUI	TGTACA	1 cut(s)	394
BstC8I	GCNNGC	3 cut(s)	517, 567, 861
BstDEI	CTNAG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	514, 550, 940
BstFNI	CGCG	2 cut(s)	219, 519
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	4 cut(s)	48, 259, 651, 789
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	45, 256, 648, 786
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 571
BstNI	CCWGG	3 cut(s)	70, 84, 636
BstSCI	CCNGG	3 cut(s)	68, 82, 634
BstSFI	CTRYAG	1 cut(s)	910
BstUI	CGCG	2 cut(s)	219, 519
BstV1I	GCAGC	3 cut(s)	322, 574, 700
BstV2I	GAAGAC	2 cut(s)	276, 799
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	5, 346, 569
BtsCI	GGATG	3 cut(s)	514, 550, 940
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	517, 567, 861
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	66, 905
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	5 cut(s)	252, 331, 350, 395, 771
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviAII	CATG	6 cut(s)	260, 417, 558, 605, 645, 893
CviQI	GTAC	5 cut(s)	252, 331, 350, 395, 771
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	4 cut(s)	47, 258, 650, 788
DpnII	GATC	4 cut(s)	45, 256, 648, 786
EaeI	YGGCCR	2 cut(s)	3, 344
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	66, 905
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	3 cut(s)	68, 82, 634
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	6 cut(s)	263, 420, 561, 608, 648, 896
FalI	AAGNNNNNCTT	6 cut(s)	711, 743, 782, 814, 865, 897
FaqI	GGGAC	4 cut(s)	79, 366, 891, 892
FatI	CATG	6 cut(s)	259, 416, 557, 604, 644, 892
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	311, 563, 714
FokI	GGATG	2 cut(s)	521, 537
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	3 cut(s)	311, 563, 714
FspBI	CTAG	3 cut(s)	701, 864, 946
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	311, 563, 714
HaeIII	GGCC	3 cut(s)	5, 346, 569
HapII	CCGG	2 cut(s)	36, 347
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	2 cut(s)	99, 660
Hin1II	CATG	6 cut(s)	263, 420, 561, 608, 648, 896
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	2 cut(s)	325, 535
HindII	GTYRAC	2 cut(s)	325, 535
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	2 cut(s)	431, 670
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	2 cut(s)	36, 347
HphI	GGTGA	3 cut(s)	223, 612, 829
Hpy166II	GTNNAC	4 cut(s)	252, 325, 535, 837
Hpy188I	TCNGA	3 cut(s)	186, 499, 681
Hpy188III	TCNNGA	3 cut(s)	383, 612, 893
Hpy8I	GTNNAC	4 cut(s)	252, 325, 535, 837
Hpy99I	CGWCG	2 cut(s)	95, 101
HpyAV	CCTTC	2 cut(s)	355, 564
HpyCH4III	ACNGT	3 cut(s)	280, 354, 688
HpyCH4IV	ACGT	2 cut(s)	273, 660
HpyCH4V	TGCA	5 cut(s)	310, 340, 692, 716, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 571
HpyF3I	CTNAG	1 cut(s)	367
HpySE526I	ACGT	2 cut(s)	273, 660
Hsp92I	GRCGYC	2 cut(s)	99, 660
Hsp92II	CATG	6 cut(s)	263, 420, 561, 608, 648, 896
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	256
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	45, 256, 648, 786
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	3 cut(s)	322, 574, 700
MaeI	CTAG	3 cut(s)	701, 864, 946
MaeII	ACGT	2 cut(s)	273, 660
MaeIII	GTNAC	2 cut(s)	274, 656
MalI	GATC	4 cut(s)	47, 258, 650, 788
MboI	GATC	4 cut(s)	45, 256, 648, 786
MboII	GAAGA	6 cut(s)	199, 281, 370, 719, 752, 799
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	148, 368
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	12, 475, 852, 926
MluI	ACGCGT	1 cut(s)	517
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	534, 820, 869, 916
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	2 cut(s)	36, 347
MspR9I	CCNGG	3 cut(s)	70, 84, 636
MvaI	CCWGG	3 cut(s)	70, 84, 636
MvnI	CGCG	2 cut(s)	219, 519
MwoI	GCNNNNNNNGC	2 cut(s)	119, 571
NdeII	GATC	4 cut(s)	45, 256, 648, 786
NlaIII	CATG	6 cut(s)	263, 420, 561, 608, 648, 896
NlaIV	GGNNCC	4 cut(s)	40, 67, 640, 907
NmuCI	GTSAC	1 cut(s)	656
NsiI	ATGCAT	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	456
PagI	TCATGA	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	431, 670
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	312, 564, 715
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	68, 82, 634
PspGI	CCWGG	3 cut(s)	68, 82, 634
PspN4I	GGNNCC	4 cut(s)	40, 67, 640, 907
PspPI	GGNCC	2 cut(s)	66, 905
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	5 cut(s)	253, 332, 351, 396, 772
RsaNI	GTAC	5 cut(s)	252, 331, 350, 395, 771
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	3 cut(s)	311, 563, 714
Sau3AI	GATC	4 cut(s)	45, 256, 648, 786
Sau96I	GGNCC	2 cut(s)	66, 905
ScaI	AGTACT	1 cut(s)	772
ScrFI	CCNGG	3 cut(s)	70, 84, 636
SduI	GDGCHC	2 cut(s)	148, 368
SfcI	CTRYAG	1 cut(s)	910
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	66, 905
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	456, 665
SmoI	CTYRAG	2 cut(s)	456, 665
Sse9I	AATT	4 cut(s)	12, 475, 852, 926
SsiI	CCGC	3 cut(s)	111, 219, 623
SspMI	CTAG	3 cut(s)	701, 864, 946
StyD4I	CCNGG	3 cut(s)	68, 82, 634
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	280, 354, 688
TaiI	ACGT	2 cut(s)	276, 663
TaqI	TCGA	3 cut(s)	457, 730, 801
TasI	AATT	4 cut(s)	12, 475, 852, 926
TatI	WGTACW	3 cut(s)	251, 394, 770
TfiI	GAWTC	2 cut(s)	431, 670
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	3 cut(s)	310, 562, 713
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	7 cut(s)	24, 177, 546, 593, 792, 873, 881
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	66, 905
XapI	RAATTY	1 cut(s)	12
XhoI	CTCGAG	1 cut(s)	456
XspI	CTAG	3 cut(s)	701, 864, 946
ZraI	GACGTC	1 cut(s)	661
ZrmI	AGTACT	1 cut(s)	772
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.