Rorug03G0075700

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008277
Physical Location & Seq
Reverse (-)
5910876 .. 5920703
9828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0075700.1

Sequence Viewer

Length: 2994 bp
ATGTTGAAGCTTCTCTCTTCTTCCTCCTCGTGCCTACAGGCCGGAGCCCACAGTTTGGGCCCTAAATTGGGCGTCCGGCCCGAAATGACTTCGCCGTTACTCCGAGTTCTGAACTCCCTCACCGGCCGGAATCGGCCCAATATGGCTCGCCGGGCGTTTTTTTGCTCGGATTCAAGCGACGGCTCCGATCAAGTTGTTGAGTTGGAGGCCAAGGCTGGGACTGAGGGTGAGGCTGAGGCTGAGGCTAAGGCTTCTTCAGCTATAGTGTCCACAAACCCTAGACCAGAAGATTATCTAACGGTTTTAGCTTTGCCATTGCCGCATAGACCACTCTTTCCAGGGTTCTACATGCCAATTTATGTGAAGGATCCGAAATTGCTAGCGGCTTTACAGGAAAGCCGGAAACGGCAAGCTCCATATGCTGGAGCTTTTCTGGTGAAGGATGAGCCAGGGACTGATCCAAGTTTGGTATCAGGTTCTGATACAGAGAAAAGCATATATGAATTAAAAGGGAAAGCCTTGTTTAATCGATTGCATGAAGTTGGTACGCTTGCCCAGATTTCTAGTATCCAAGGCGACCAAGTAGTGCTTATTGGTCATAGGCGACTTCGAATTACAGAGATGGTTGATGAGGATCCCCTGACTGTAAAAGTTGACCATCTCAAGAATAAACCATATAACAAGGATGATGATGTCATAAAGGCTACGTCATTTGAGGTTATAGCAACCTTAAGAGATGTTCTGAAGACTAGTTCTCTTTGGAGAGATCATGTTCAAACATACACTCAGCATATAGGTGACTTTAATTTTCCGAGGTTAGCAGATTTTGGAGCTGCAATATCTGGTGCAAACAAATTGCAGTGCCAGCAAGTGCTTGAAGAGCTAGACGTGTACAAACGTTTAAATCTTACACTAGAATTGGTGAAGAAAGAGATGGAAATCAGCAAGCTTCAGGAAACTATTGCAAAAGCGATTGAAGAGAAGATAAGCCGTGAGCAACGCCGCTACTTGTTGAATGAGCAGCTTAAAGCCATAAAGAAGGAACTGGGATTAGAGACAGATGACAAGACAGCACTTTCTGCAAAGTTTAGGGAGAGGCTCGAACCAAACAAGGATAAATGTCCACCTCATGTTTTGCAAGTTATAGAAGAAGAGCTTGCAAAACTACAGCTGCTGGAGGCCAGTTCGAGTGAATTTAACGTGACACGTAATTACCTAGATTGGTTGACGTCAATTCCCTGGGGAAATTACAGTAATGAGAACTTTGATGTTCTTCGGGCTGAAAAAATTCTTGATGAAGACCATTACGGATTAAACGACGTAAAGGAAAGGATATTGGAATTTATTGCTGTTGGAAAACTCAGAGGAATCTCACAAGGAAAAATCATTTGTCTCTCTGGCCCTCCTGGAGTTGGCAAAACCAGCATTGGTCGTTCAATTGCACGTGCATTGAATCGCAATTTCTTTCGATTTTCTGTTGGAGGGTTATCTGATGTCGCTGAAATCAAGGGACATCGCCGAACCTATATCGGTGCTATGCCAGGAAAGATGGTTCAATGCCTTAAAAATGTTGGAACAGCTAACCCTCTAGTTCTAATTGATGAGATCGACAAGTTGGGAATTGGACATGCTGGTGATCCGGCTAGTGCTTTGTTGGAGCTTCTTGATCCAGAGCAAAATGCTAATTTTCTAGATCATTATCTTGATGTTCCAATCGACCTAACAAAGGTTCTGTTTGTTTGTACAGCAAATGTTGTCGAGAATATACCAGCTCCTCTCTTGGATAGAATGGAGGTCATTTCCATAGCTGGGTATATTACTGATGAGAAAATGCACATTGCTAGAGACTATTTGGAGAAGACGACACGTGAAGCATGCGGCATCGAACCTGAACAGGTTGAAGTGACCAATGCAGCACTTCTTGCTCTCGTAGAAAATTATTGCCGAGAAGCAGGTGTTCGGAACCTCCAAAAGCACATAGAAAAGATCTACCGTAAGATAGCTTTGCAACTTGTTAGGCAAGGACAGTCAGATGAACCTGTAGATGCTGGCGAAGTACAGTCTCCCGTCAGTAAAACTGATCTCCCAGATGAACCTGCAGTTGTTGCAGATACTGATGAAGCCAAAGTAGAAGATTTTGCTGGCGTTAAACAGACTGCAGATGAATCAGCAGAGGGTAAAGACCATGAACATAATACTGAAACCTCTGTGGGAAGTGTCACTATCCCAGATGAAACTGGAGCTTCTGAAGTTCAGGTTGCAGATACTGGTGAACTTATGCATTCAAAGGATACAGAAGAAACTCAGAAAATTCAGGAGGGTGAAGCCAAAAAACCAGTTGAGAAAGTGTTGGTTAATGAATCAAACTTGGGTGACTTTGTTGGCAAACCAGTTTTCCATGCGGATCGCATCTATGAACAGACTCCGGTTGGAGTTGTCATGGGTCTTGCTTGGACTGCCATGGGTGGTTCCACCCTGTATATAGAGACCACTCAGGTCGAGGAAGGAGAGGGAAAAGGAGCGCTTCATGCTACTGGTCAACTTGGAGATGTTATGAAAGAAAGTACCCAAATTGCTCACACTGTGGCCAGAGCAATATTGCTCGAGAAAGAGCCAGAGAACACTTTCTTTGCCGATTCCAAGCTTCATCTCCATGTGCCGGCAGGGGCCACACCAAAGGATGGGCCAAGTGCTGGTTGCACCATGATCACATCCATGCTGTCCGTTGCCATGAAGAAGCCTGTCAAGAAGGATTTAGCAATGACAGGGGAAGTAACACTAACTGGCAGGATCCTTCCAATTGGCGGGGTTAAGGAGAAGACAATAGCAGCAAGGCGGAGTGGAGTGAAGACCATCATATTCCCTGAAGCCAACAGGAAGGATTTTGATGAGCTTGCCCCTAATGTAAAAGAAGGTCTTGATGTTCACTTTGTAGATGACTACAATCAGATATTCGCTTTGGCTTTCAGTGATGACCAGAATCAAGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

997

Amino Acids

109.75

Weight (kDa)

5.28

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 101 - 310 3.9e-36 ATP-dependent protease La (LON) substrate-binding domain
AAA PF00004 463 - 600 7.2e-23 ATPase family associated with various cellular activities (AAA)
Lon_lid PF22667 624 - 675 4.3e-18 Lon protease AAA+ ATPase lid domain
Lon_C PF05362 785 - 989 1.7e-76 Lon protease (S16) C-terminal proteolytic domain
ChlI PF13541 837 - 958 5.6e-06 Subunit ChlI of Mg-chelatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1943
AatII GACGTC 1 cut(s) 1232
Acc36I ACCTGC 2 cut(s) 1943, 2104
AccB7I CCANNNNNTGG 4 cut(s) 55, 422, 2681, 2693
AciI CCGC 7 cut(s) 320, 383, 1003, 1878, 2402, 2805, 2836
AclI AACGTT 1 cut(s) 898
AcoI YGGCCR 2 cut(s) 124, 2586
AcsI RAATTY 4 cut(s) 1193, 1287, 1340, 2310
AcuI CTGAAG 5 cut(s) 240, 764, 935, 2268, 2886
AcvI CACGTG 2 cut(s) 1445, 1868
AcyI GRCGYC 2 cut(s) 72, 1229
AdeI CACNNNGTG 1 cut(s) 2584
AfaI GTAC 5 cut(s) 547, 893, 1744, 2058, 2566
AfeI AGCGCT 1 cut(s) 2523
AflII CTTAAG 1 cut(s) 730
AflIII ACRYGT 3 cut(s) 888, 1205, 1865
AhlI ACTAGT 1 cut(s) 749
AjiI CACGTC 1 cut(s) 889
AjnI CCWGG 5 cut(s) 337, 448, 1238, 1405, 1540
AloI GAACNNNNNNTCC 2 cut(s) 1536, 1568
Alw26I GTCTC 5 cut(s) 1049, 1397, 1839, 2067, 2480
AlwNI CAGNNNCTG 5 cut(s) 455, 479, 1174, 2114, 2267
Ama87I CYCGRG 1 cut(s) 2603
Aor51HI AGCGCT 1 cut(s) 2523
ApaI GGGCCC 1 cut(s) 62
ApeKI GCWGC 5 cut(s) 833, 1021, 1171, 1913, 2828
ApoI RAATTY 4 cut(s) 1193, 1287, 1340, 2310
Asp700I GAANNNNTTC 2 cut(s) 1287, 2624
AspLEI GCGC 1 cut(s) 2524
AspS9I GGNCC 7 cut(s) 58, 59, 78, 135, 1400, 2667, 2684
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 9 cut(s) 112, 239, 448, 809, 934, 1646, 2282, 2333, 2384
AsuII TTCGAA 1 cut(s) 610
AsuNHI GCTAGC 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 2603
BaeGI GKGCMC 1 cut(s) 62
BalI TGGCCA 1 cut(s) 2588
BamHI GGATCC 3 cut(s) 367, 634, 2790
BanII GRGCYC 2 cut(s) 49, 62
BauI CACGAG 1 cut(s) 28
BbrPI CACGTG 2 cut(s) 1445, 1868
BbsI GAAGAC 5 cut(s) 752, 1305, 1865, 2825, 2855
BbvCI CCTCAGC 2 cut(s) 234, 240
BbvI GCAGC 5 cut(s) 820, 1033, 1158, 1925, 2840
BccI CCATC 6 cut(s) 616, 666, 928, 1543, 2675, 2861
BceAI ACGGC 4 cut(s) 79, 196, 422, 975
BciT130I CCWGG 5 cut(s) 339, 450, 1240, 1407, 1542
BciVI GTATCC 2 cut(s) 578, 2284
BclI TGATCA 1 cut(s) 2706
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 5 cut(s) 1049, 1397, 1839, 2067, 2480
BcuI ACTAGT 1 cut(s) 749
BfmI CTRYAG 6 cut(s) 35, 261, 1166, 2040, 2097, 2157
BfoI RGCGCY 1 cut(s) 2525
BfrI CTTAAG 1 cut(s) 730
BfuAI ACCTGC 2 cut(s) 1943, 2104
BfuI GTATCC 2 cut(s) 578, 2284
BglII AGATCT 1 cut(s) 1986
BisI GCNGC 9 cut(s) 320, 384, 834, 1003, 1022, 1172, 1879, 1914, 2829
BlsI GCNGC 9 cut(s) 321, 385, 835, 1004, 1023, 1173, 1880, 1915, 2830
Bme1390I CCNGG 6 cut(s) 152, 339, 450, 1240, 1407, 1542
BmeT110I CYCGRG 1 cut(s) 2603
BmgBI CACGTC 1 cut(s) 889
BmgT120I GGNCC 7 cut(s) 58, 59, 78, 135, 1400, 2667, 2684
BmiI GGNNCC 9 cut(s) 46, 60, 184, 369, 636, 1964, 2470, 2668, 2792
BmrFI CCNGG 6 cut(s) 152, 339, 450, 1240, 1407, 1542
BmrI ACTGGG 1 cut(s) 1055
BmsI GCATC 3 cut(s) 1890, 2035, 2418
BmtI GCTAGC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 1055
BpiI GAAGAC 5 cut(s) 752, 1305, 1865, 2825, 2855
BpmI CTGGAG 4 cut(s) 444, 1196, 1428, 2259
Bpu10I CCTNAGC 3 cut(s) 234, 240, 246
Bpu14I TTCGAA 1 cut(s) 610
BpuEI CTTGAG 1 cut(s) 647
BpuMI CCSGG 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 529
BsaAI YACGTR 3 cut(s) 1208, 1445, 1868
BsaBI GATNNNNATC 3 cut(s) 633, 938, 1698
BsaHI GRCGYC 2 cut(s) 72, 1229
BsaI GGTCTC 1 cut(s) 2480
BsaJI CCNNGG 8 cut(s) 210, 338, 449, 571, 812, 1238, 1239, 2460
BsaWI WCCGGW 1 cut(s) 2425
Bse118I RCCGGY 2 cut(s) 122, 2659
Bse1I ACTGG 8 cut(s) 1050, 1182, 2242, 2272, 2336, 2390, 2539, 2788
Bse3DI GCAATG 3 cut(s) 314, 1836, 2766
Bse8I GATNNNNATC 3 cut(s) 633, 938, 1698
BseBI CCWGG 5 cut(s) 339, 450, 1240, 1407, 1542
BseCI ATCGAT 1 cut(s) 529
BseDI CCNNGG 8 cut(s) 210, 338, 449, 571, 812, 1238, 1239, 2460
BseGI GGATG 4 cut(s) 448, 691, 2686, 2711
BseJI GATNNNNATC 3 cut(s) 633, 938, 1698
BseMI GCAATG 3 cut(s) 314, 1836, 2766
BseMII CTCAG 7 cut(s) 213, 225, 231, 800, 1375, 2318, 2507
BseNI ACTGG 8 cut(s) 1050, 1182, 2242, 2272, 2336, 2390, 2539, 2788
BseRI GAGGAG 2 cut(s) 16, 1764
BseSI GKGCMC 1 cut(s) 62
BseX3I CGGCCG 1 cut(s) 124
BseXI GCAGC 5 cut(s) 820, 1033, 1158, 1925, 2840
BseYI CCCAGC 2 cut(s) 215, 1808
Bsh1285I CGRYCG 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 529
BsiEI CGRYCG 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 2603
BsiSI CCGG 9 cut(s) 42, 76, 123, 127, 151, 400, 1640, 2426, 2660
BslFI GGGAC 3 cut(s) 232, 466, 1524
BsmAI GTCTC 5 cut(s) 1049, 1397, 1839, 2067, 2480
BsmFI GGGAC 3 cut(s) 232, 466, 1524
BsmI GAATGC 1 cut(s) 2281
Bso31I GGTCTC 1 cut(s) 2480
BsoBI CYCGRG 1 cut(s) 2603
Bsp119I TTCGAA 1 cut(s) 610
Bsp120I GGGCCC 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 49, 62
Bsp1407I TGTACA 2 cut(s) 891, 1742
Bsp19I CCATGG 1 cut(s) 2460
BspACI CCGC 7 cut(s) 320, 383, 1003, 1878, 2402, 2805, 2836
BspCNI CTCAG 7 cut(s) 214, 226, 232, 799, 1374, 2317, 2506
BspDI ATCGAT 1 cut(s) 529
BspLI GGNNCC 9 cut(s) 46, 60, 184, 369, 636, 1964, 2470, 2668, 2792
BspMAI CTGCAG 2 cut(s) 2101, 2161
BspMI ACCTGC 2 cut(s) 1943, 2104
BspOI GCTAGC 1 cut(s) 383
BspQI GCTCTTC 2 cut(s) 873, 1146
BspT104I TTCGAA 1 cut(s) 610
BspTI CTTAAG 1 cut(s) 730
BspTNI GGTCTC 1 cut(s) 2480
BsrDI GCAATG 3 cut(s) 314, 1836, 2766
BsrFI RCCGGY 2 cut(s) 122, 2659
BsrGI TGTACA 2 cut(s) 891, 1742
BsrI ACTGG 8 cut(s) 1050, 1182, 2242, 2272, 2336, 2390, 2539, 2788
BssAI RCCGGY 2 cut(s) 122, 2659
BssECI CCNNGG 8 cut(s) 210, 338, 449, 571, 812, 1238, 1239, 2460
BssNI GRCGYC 2 cut(s) 72, 1229
BssSI CACGAG 1 cut(s) 28
BssT1I CCWWGG 3 cut(s) 210, 571, 2460
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 5 cut(s) 339, 450, 1240, 1407, 1542
Bst4CI ACNGT 8 cut(s) 53, 301, 646, 1253, 1994, 2028, 2061, 2584
Bst6I CTCTTC 4 cut(s) 22, 873, 972, 1146
BstACI GRCGYC 2 cut(s) 72, 1229
BstAFI CTTAAG 1 cut(s) 730
BstAPI GCANNNNNTGC 3 cut(s) 1079, 1922, 2105
BstAUI TGTACA 2 cut(s) 891, 1742
BstBAI YACGTR 3 cut(s) 1208, 1445, 1868
BstBI TTCGAA 1 cut(s) 610
BstDEI CTNAG 8 cut(s) 222, 234, 240, 246, 786, 1361, 2304, 2493
BstDSI CCRYGG 1 cut(s) 2460
BstENI CCTNNNNNAGG 1 cut(s) 1724
BstF5I GGATG 4 cut(s) 448, 691, 2686, 2711
BstH2I RGCGCY 1 cut(s) 2525
BstHHI GCGC 1 cut(s) 2524
BstMAI GTCTC 5 cut(s) 1049, 1397, 1839, 2067, 2480
BstMCI CGRYCG 1 cut(s) 127
BstNI CCWGG 5 cut(s) 339, 450, 1240, 1407, 1542
BstNSI RCATGY 3 cut(s) 352, 1631, 1878
BstSCI CCNGG 6 cut(s) 150, 337, 448, 1238, 1405, 1540
BstSFI CTRYAG 6 cut(s) 35, 261, 1166, 2040, 2097, 2157
BstSLI GKGCMC 1 cut(s) 62
BstV1I GCAGC 5 cut(s) 820, 1033, 1158, 1925, 2840
BstV2I GAAGAC 5 cut(s) 752, 1305, 1865, 2825, 2855
BstX2I RGATCY 4 cut(s) 367, 634, 1986, 2790
BstYI RGATCY 4 cut(s) 367, 634, 1986, 2790
BstZI CGGCCG 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 529
BsuI GTATCC 2 cut(s) 578, 2284
BsuTUI ATCGAT 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 2460
BtgZI GCGATG 1 cut(s) 1499
BtrI CACGTC 1 cut(s) 889
BtsCI GGATG 4 cut(s) 448, 691, 2686, 2711
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 3 cut(s) 866, 2580, 2974
BveI ACCTGC 2 cut(s) 1943, 2104
CaiI CAGNNNCTG 5 cut(s) 455, 479, 1174, 2114, 2267
CfoI GCGC 1 cut(s) 2524
Cfr10I RCCGGY 2 cut(s) 122, 2659
Cfr13I GGNCC 7 cut(s) 58, 59, 78, 135, 1400, 2667, 2684
ClaI ATCGAT 1 cut(s) 529
CseI GACGC 1 cut(s) 61
Csp6I GTAC 5 cut(s) 546, 892, 1743, 2057, 2565
CviQI GTAC 5 cut(s) 546, 892, 1743, 2057, 2565
DdeI CTNAG 8 cut(s) 222, 234, 240, 246, 786, 1361, 2304, 2493
DraI TTTAAA 1 cut(s) 903
DraIII CACNNNGTG 1 cut(s) 2584
EaeI YGGCCR 2 cut(s) 124, 2586
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 4 cut(s) 22, 873, 972, 1146
EarI CTCTTC 4 cut(s) 22, 873, 972, 1146
EciI GGCGGA 1 cut(s) 2851
EclXI CGGCCG 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 210, 571, 2460
Eco24I GRGCYC 2 cut(s) 49, 62
Eco31I GGTCTC 1 cut(s) 2480
Eco47III AGCGCT 1 cut(s) 2523
Eco52I CGGCCG 1 cut(s) 124
Eco57I CTGAAG 5 cut(s) 240, 764, 935, 2268, 2886
Eco72I CACGTG 2 cut(s) 1445, 1868
Eco88I CYCGRG 1 cut(s) 2603
EcoNI CCTNNNNNAGG 1 cut(s) 1724
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 5 cut(s) 337, 448, 1238, 1405, 1540
EcoT14I CCWWGG 3 cut(s) 210, 571, 2460
EcoT22I ATGCAT 1 cut(s) 2283
EcoT38I GRGCYC 2 cut(s) 49, 62
ErhI CCWWGG 3 cut(s) 210, 571, 2460
FalI AAGNNNNNCTT 8 cut(s) 573, 605, 1140, 1172, 2508, 2540, 2901, 2933
FaqI GGGAC 3 cut(s) 232, 466, 1524
FauI CCCGC 1 cut(s) 2798
FauNDI CATATG 1 cut(s) 418
FbaI TGATCA 1 cut(s) 2706
Fnu4HI GCNGC 9 cut(s) 320, 384, 834, 1003, 1022, 1172, 1879, 1914, 2829
FokI GGATG 4 cut(s) 455, 698, 2693, 2698
FriOI GRGCYC 2 cut(s) 49, 62
Fsp4HI GCNGC 9 cut(s) 320, 384, 834, 1003, 1022, 1172, 1879, 1914, 2829
GlaI GCGC 1 cut(s) 2523
GluI GCNGC 9 cut(s) 320, 384, 834, 1003, 1022, 1172, 1879, 1914, 2829
GsaI CCCAGC 2 cut(s) 219, 1812
GsuI CTGGAG 4 cut(s) 444, 1196, 1428, 2259
HaeII RGCGCY 1 cut(s) 2525
HapII CCGG 9 cut(s) 42, 76, 123, 127, 151, 400, 1640, 2426, 2660
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 2524
Hin1I GRCGYC 2 cut(s) 72, 1229
Hin6I GCGC 1 cut(s) 2522
HinP1I GCGC 1 cut(s) 2522
HincII GTYRAC 3 cut(s) 655, 1227, 2540
HindII GTYRAC 3 cut(s) 655, 1227, 2540
HindIII AAGCTT 3 cut(s) 8, 947, 2642
HinfI GANTC 9 cut(s) 130, 170, 1368, 1453, 2165, 2360, 2422, 2636, 2980
HpaII CCGG 9 cut(s) 42, 76, 123, 127, 151, 400, 1640, 2426, 2660
HphI GGTGA 9 cut(s) 112, 239, 448, 809, 934, 1646, 2282, 2333, 2384
Hpy166II GTNNAC 8 cut(s) 270, 655, 892, 1124, 1227, 2273, 2540, 2926
Hpy8I GTNNAC 8 cut(s) 270, 655, 892, 1124, 1227, 2273, 2540, 2926
Hpy99I CGWCG 2 cut(s) 182, 1322
HpyAV CCTTC 8 cut(s) 358, 433, 1033, 2498, 2743, 2804, 2872, 2906
HpyCH4III ACNGT 8 cut(s) 53, 301, 646, 1253, 1994, 2028, 2061, 2584
HpyCH4IV ACGT 9 cut(s) 707, 888, 898, 1200, 1207, 1229, 1320, 1444, 1867
HpyF3I CTNAG 8 cut(s) 222, 234, 240, 246, 786, 1361, 2304, 2493
HpySE526I ACGT 9 cut(s) 707, 888, 898, 1200, 1207, 1229, 1320, 1444, 1867
Hsp92I GRCGYC 2 cut(s) 72, 1229
HspAI GCGC 1 cut(s) 2522
KroI GCCGGC 1 cut(s) 2659
KroNI GCCGGC 1 cut(s) 2661
Ksp22I TGATCA 1 cut(s) 2706
LguI GCTCTTC 2 cut(s) 873, 1146
LmnI GCTCC 9 cut(s) 44, 188, 418, 425, 830, 1657, 1777, 2240, 2519
Lsp1109I GCAGC 5 cut(s) 820, 1033, 1158, 1925, 2840
LweI GCATC 3 cut(s) 1890, 2035, 2418
MaeII ACGT 9 cut(s) 707, 888, 898, 1200, 1207, 1229, 1320, 1444, 1867
MaeIII GTNAC 7 cut(s) 96, 797, 1201, 1903, 2218, 2372, 2773
MfeI CAATTG 2 cut(s) 1437, 2799
MflI RGATCY 4 cut(s) 367, 634, 1986, 2790
MhlI GDGCHC 2 cut(s) 49, 62
MlsI TGGCCA 1 cut(s) 2588
MluNI TGGCCA 1 cut(s) 2588
MlyI GAGTC 1 cut(s) 2416
MmeI TCCRAC 6 cut(s) 183, 1333, 1459, 1552, 1635, 2410
Mox20I TGGCCA 1 cut(s) 2588
Mph1103I ATGCAT 1 cut(s) 2283
MroNI GCCGGC 1 cut(s) 2659
MroXI GAANNNNTTC 2 cut(s) 1287, 2624
MscI TGGCCA 1 cut(s) 2588
MslI CAYNNNNRTG 4 cut(s) 795, 1632, 2652, 2714
Msp20I TGGCCA 1 cut(s) 2588
MspA1I CMGCKG 1 cut(s) 1171
MspCI CTTAAG 1 cut(s) 730
MspI CCGG 9 cut(s) 42, 76, 123, 127, 151, 400, 1640, 2426, 2660
MspR9I CCNGG 6 cut(s) 152, 339, 450, 1240, 1407, 1542
MunI CAATTG 2 cut(s) 1437, 2799
Mva1269I GAATGC 1 cut(s) 2281
MvaI CCWGG 5 cut(s) 339, 450, 1240, 1407, 1542
NaeI GCCGGC 1 cut(s) 2661
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 2460
NdeI CATATG 1 cut(s) 418
NgoMIV GCCGGC 1 cut(s) 2659
NheI GCTAGC 1 cut(s) 379
NlaIV GGNNCC 9 cut(s) 46, 60, 184, 369, 636, 1964, 2470, 2668, 2792
NmeAIII GCCGAG 1 cut(s) 1970
NmuCI GTSAC 5 cut(s) 797, 1201, 1903, 2218, 2372
NsiI ATGCAT 1 cut(s) 2283
NspI RCATGY 3 cut(s) 352, 1631, 1878
NspV TTCGAA 1 cut(s) 610
PaeI GCATGC 1 cut(s) 1878
PaeR7I CTCGAG 1 cut(s) 2603
PaqCI CACCTGC 1 cut(s) 1943
PasI CCCWGGG 1 cut(s) 1239
PciSI GCTCTTC 2 cut(s) 873, 1146
PcsI WCGNNNNNNNCGW 1 cut(s) 1314
PctI GAATGC 1 cut(s) 2281
PdiI GCCGGC 1 cut(s) 2661
PdmI GAANNNNTTC 2 cut(s) 1287, 2624
PfeI GAWTC 8 cut(s) 130, 170, 1368, 1453, 2165, 2360, 2636, 2980
PflMI CCANNNNNTGG 4 cut(s) 55, 422, 2681, 2693
PfoI TCCNGGA 1 cut(s) 1405
PkrI GCNGC 9 cut(s) 321, 385, 835, 1004, 1023, 1173, 1880, 1915, 2830
PleI GAGTC 1 cut(s) 2416
PmaCI CACGTG 2 cut(s) 1445, 1868
PmlI CACGTG 2 cut(s) 1445, 1868
PpsI GAGTC 1 cut(s) 2416
Ppu21I YACGTR 3 cut(s) 1208, 1445, 1868
Psp1406I AACGTT 1 cut(s) 898
Psp6I CCWGG 5 cut(s) 337, 448, 1238, 1405, 1540
PspCI CACGTG 2 cut(s) 1445, 1868
PspFI CCCAGC 2 cut(s) 215, 1808
PspGI CCWGG 5 cut(s) 337, 448, 1238, 1405, 1540
PspN4I GGNNCC 9 cut(s) 46, 60, 184, 369, 636, 1964, 2470, 2668, 2792
PspOMI GGGCCC 1 cut(s) 58
PspPI GGNCC 7 cut(s) 58, 59, 78, 135, 1400, 2667, 2684
PstI CTGCAG 2 cut(s) 2101, 2161
PstNI CAGNNNCTG 5 cut(s) 455, 479, 1174, 2114, 2267
PsuI RGATCY 4 cut(s) 367, 634, 1986, 2790
PvuII CAGCTG 1 cut(s) 1171
RsaI GTAC 5 cut(s) 547, 893, 1744, 2058, 2566
RsaNI GTAC 5 cut(s) 546, 892, 1743, 2057, 2565
RseI CAYNNNNRTG 4 cut(s) 795, 1632, 2652, 2714
SapI GCTCTTC 2 cut(s) 873, 1146
SatI GCNGC 9 cut(s) 320, 384, 834, 1003, 1022, 1172, 1879, 1914, 2829
Sau96I GGNCC 7 cut(s) 58, 59, 78, 135, 1400, 2667, 2684
SchI GAGTC 1 cut(s) 2416
ScrFI CCNGG 6 cut(s) 152, 339, 450, 1240, 1407, 1542
SduI GDGCHC 2 cut(s) 49, 62
SfaNI GCATC 3 cut(s) 1890, 2035, 2418
SfcI CTRYAG 6 cut(s) 35, 261, 1166, 2040, 2097, 2157
Sfr274I CTCGAG 1 cut(s) 2603
SfuI TTCGAA 1 cut(s) 610
SlaI CTCGAG 1 cut(s) 2603
SmiMI CAYNNNNRTG 4 cut(s) 795, 1632, 2652, 2714
SmlI CTYRAG 3 cut(s) 662, 730, 2603
SmoI CTYRAG 3 cut(s) 662, 730, 2603
SpeI ACTAGT 1 cut(s) 749
SphI GCATGC 1 cut(s) 1878
SsiI CCGC 7 cut(s) 320, 383, 1003, 1878, 2402, 2805, 2836
SspI AATATT 1 cut(s) 2598
StyD4I CCNGG 6 cut(s) 150, 337, 448, 1238, 1405, 1540
StyI CCWWGG 3 cut(s) 210, 571, 2460
TaaI ACNGT 8 cut(s) 53, 301, 646, 1253, 1994, 2028, 2061, 2584
TaiI ACGT 9 cut(s) 710, 891, 901, 1203, 1210, 1232, 1323, 1447, 1870
TatI WGTACW 3 cut(s) 891, 1742, 2056
TauI GCSGC 4 cut(s) 322, 386, 1005, 1881
TfiI GAWTC 8 cut(s) 130, 170, 1368, 1453, 2165, 2360, 2636, 2980
TscAI CASTG 3 cut(s) 866, 2587, 2974
TseFI GTSAC 5 cut(s) 797, 1201, 1903, 2218, 2372
TseI GCWGC 5 cut(s) 833, 1021, 1171, 1913, 2828
Tsp45I GTSAC 5 cut(s) 797, 1201, 1903, 2218, 2372
TspGWI ACGGA 2 cut(s) 1323, 2713
TspRI CASTG 3 cut(s) 866, 2587, 2974
Van91I CCANNNNNTGG 4 cut(s) 55, 422, 2681, 2693
Vha464I CTTAAG 1 cut(s) 730
XagI CCTNNNNNAGG 1 cut(s) 1724
XapI RAATTY 4 cut(s) 1193, 1287, 1340, 2310
XbaI TCTAGA 1 cut(s) 1690
XceI RCATGY 3 cut(s) 352, 1631, 1878
XhoI CTCGAG 1 cut(s) 2603
XmnI GAANNNNTTC 2 cut(s) 1287, 2624
ZraI GACGTC 1 cut(s) 1230
Zsp2I ATGCAT 1 cut(s) 2283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.