Rh3CG149700

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008277
Physical Location & Seq
Reverse (-)
12478352 .. 12480138
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG149700.1

Sequence Viewer

Length: 279 bp
ATGGCTTTGTTCTCGTCGATGCTTCGCAGGCCATCCTACTCCTTATTCTCCTTCGTGCTCCGCACCGTCGGTTCTGCAACAACCTTTCACAGCCGATTCTCCACCGTCCCCAATTTCGGCGGTGAGATCACCCGAGAATGCTCTGTTCCATTTCGGCATTTCTCCGCCGCTACCGCCACCGCCATGAAACCGGCCACCGACGAAAGGGTAGTCGGAGCTCTCGAGTCTGAGATCAAGGTCGCCGAAGAGGACATAGAAAATTATAAGGTCAGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

92

Amino Acids

10.14

Weight (kDa)

6.72

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AciI CCGC 6 cut(s) 61, 120, 165, 168, 174, 180
AcoI YGGCCR 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 116, 204
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 2 cut(s) 60, 220
Ama87I CYCGRG 2 cut(s) 132, 221
AoxI GGCC 2 cut(s) 29, 192
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AsuHPI GGTGA 2 cut(s) 121, 134
AvaI CYCGRG 2 cut(s) 132, 221
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 2 cut(s) 60, 220
BccI CCATC 1 cut(s) 40
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmeT110I CYCGRG 2 cut(s) 132, 221
BmsI GCATC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 204
Bse118I RCCGGY 1 cut(s) 190
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 116, 204
BseMII CTCAG 1 cut(s) 219
BshFI GGCC 2 cut(s) 31, 194
BsiHKAI GWGCWC 2 cut(s) 60, 220
BsiHKCI CYCGRG 2 cut(s) 132, 221
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 116, 204
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 2 cut(s) 31, 194
BsoBI CYCGRG 2 cut(s) 132, 221
Bsp1286I GDGCHC 2 cut(s) 60, 220
Bsp143I GATC 2 cut(s) 126, 231
BspACI CCGC 6 cut(s) 61, 120, 165, 168, 174, 180
BspANI GGCC 2 cut(s) 31, 194
BspCNI CTCAG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssMI GATC 2 cut(s) 126, 231
Bst4CI ACNGT 2 cut(s) 67, 106
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 2 cut(s) 129, 234
BstMBI GATC 2 cut(s) 126, 231
BstMWI GCNNNNNNNGC 2 cut(s) 28, 173
BsuRI GGCC 2 cut(s) 31, 194
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 190
CviAII CATG 1 cut(s) 184
CviJI RGCY 5 cut(s) 5, 31, 93, 194, 218
CviKI_1 RGCY 5 cut(s) 5, 31, 93, 194, 218
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 128, 233
DpnII GATC 2 cut(s) 126, 231
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 218
Eco88I CYCGRG 2 cut(s) 132, 221
EcoICRI GAGCTC 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 1 cut(s) 187
FaiI YATR 3 cut(s) 185, 254, 264
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 2 cut(s) 31, 194
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 187
HinfI GANTC 2 cut(s) 96, 224
HpaII CCGG 1 cut(s) 191
HphI GGTGA 2 cut(s) 121, 134
Hpy188I TCNGA 2 cut(s) 215, 229
Hpy188III TCNNGA 1 cut(s) 221
Hpy99I CGWCG 3 cut(s) 19, 71, 203
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 2 cut(s) 67, 106
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 173
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 2 cut(s) 126, 231
LmnI GCTCC 2 cut(s) 63, 215
LpnPI CCDG 2 cut(s) 13, 204
LweI GCATC 1 cut(s) 9
MalI GATC 2 cut(s) 128, 233
MboI GATC 2 cut(s) 126, 231
MboII GAAGA 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 60, 220
MluCI AATT 2 cut(s) 112, 259
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 1 cut(s) 241
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 28, 173
NdeII GATC 2 cut(s) 126, 231
NlaIII CATG 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 182
SacI GAGCTC 1 cut(s) 220
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 126, 231
SchI GAGTC 1 cut(s) 233
SduI GDGCHC 2 cut(s) 60, 220
SetI ASST 4 cut(s) 86, 220, 240, 270
SfaNI GCATC 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 2 cut(s) 112, 259
SsiI CCGC 6 cut(s) 61, 120, 165, 168, 174, 180
SstI GAGCTC 1 cut(s) 220
TaaI ACNGT 2 cut(s) 67, 106
TaqI TCGA 2 cut(s) 17, 222
TasI AATT 2 cut(s) 112, 259
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 96
TscAI CASTG 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.