Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008277

Physical Location & Seq

Genomic Coordinates Reverse (-)

42269939 .. 42270690

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCGATCCCAAGACCCTCACCGGCGCCGTCCACCGTCGAAGACTGCTGGGACTGCATGCTCCCTGGCCCACCCAGCAGCAACAACTTCGGATCCGCAGACGTCAGCCCCTCCGGCCTCCTCGTATTCCCTGCTGGCAGCTCCATCTCCTTCATCGACACCCGTTCAATGCAGCTCGTCGTCTCCCTCCCCATGCCTCCCCCTCCCCCTCCCAATCCTCCTCCGCCACCGCCACGTCATCACTATCCCCCTTCGTCACCTCCGTCCGGTGGACCCCACTCCCTCTCGGCCGCGACCTCCTCTCCACCGAGCCTTCCAGCTCCCACCTCCTCCTTGCCGCCAGGGTCGCATCGCCCTTCTCAACCTCCGCCTCAAGTCGCCGGTCCTATATTGAGGGAGGTTGCAGATGGGTTTCCTTTTGAAATGGTAGACAATGCCGGAGAGCAGACCATAATGCTCATAACAGAATTTGATGGAGAAATCATCAAAGTGGCTGTCAATATTCCTAATATTTCTTCCGTTGAGGACAGTGATGATGAGGAGGAGGAGGAGGAGGAGAATGAAGACACTGGGATTCCAATGGTTGTGAGTGTTTCAATGGAGAAGACTGTTGTTGTCTGGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

22.09

Weight (kDa)

4.26

Isoelectric Point (pI)

92.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR11_1st	PF23751	23 - 70	3.7e-17	WDR11 first beta-propeller
MAM33	PF02330	131 - 189	2e-08	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02050
fragaria_vesca	FvH4_6g13000
malus_domestica	MD00G1141400.v1.1 MD12G1150500.v1.1
prunus_persica	Prupe.6G262100_v2.0.a1
pyrus_communis	pycom12g14430
rosa_chinensis	RchiOBHm_Chr3g0465131
rosa_laevigata	RLG00000008900 RLG00000024654
rosa_multiflora	Rmu_sc0012005.1_g000006 Rmu_ssc0000252.1_g000039
rosa_roxburghii	Rroxscaffold_3G00232030 Rroxscaffold_6G00415220
rosa_rugosa	Rorug03G0075700
rosa_samantha	Rh3BG139300 Rh3CG141300 Rh3CG149600 Rh3CG149700 Rh3DG140600 Rh6CG170300 Rh6DG162600 Rh7AG360700
rosa_wichuraiana	Rw3G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	1 cut(s)	293
AciI	CCGC	6 cut(s)	96, 224, 230, 291, 338, 368
AclWI	GGATC	2 cut(s)	87, 100
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	467
AcyI	GRCGYC	2 cut(s)	26, 102
AfiI	CCNNNNNNNGG	2 cut(s)	266, 269
AgsI	TTSAA	3 cut(s)	168, 422, 597
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	64, 340
AluBI	AGCT	3 cut(s)	141, 175, 320
AluI	AGCT	3 cut(s)	141, 175, 320
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	2 cut(s)	87, 100
AoxI	GGCC	3 cut(s)	67, 115, 288
ApeKI	GCWGC	3 cut(s)	78, 138, 172
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	3 cut(s)	68, 272, 383
AsuHPI	GGTGA	2 cut(s)	12, 249
AvaII	GGWCC	2 cut(s)	272, 383
BamHI	GGATCC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	25
BbsI	GAAGAC	3 cut(s)	48, 570, 611
BbvI	GCAGC	3 cut(s)	90, 150, 184
BccI	CCATC	3 cut(s)	152, 401, 467
BceAI	ACGGC	1 cut(s)	13
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	2 cut(s)	66, 342
BcoDI	GTCTC	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	79, 139, 173, 291, 338
BlsI	GCNGC	5 cut(s)	80, 140, 174, 292, 339
Bme1390I	CCNGG	2 cut(s)	66, 342
Bme18I	GGWCC	2 cut(s)	272, 383
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	68, 272, 383
BmiI	GGNNCC	3 cut(s)	27, 94, 274
BmrFI	CCNGG	2 cut(s)	66, 342
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	579
BpiI	GAAGAC	3 cut(s)	48, 570, 611
BpuEI	CTTGAG	1 cut(s)	357
BsaHI	GRCGYC	2 cut(s)	26, 102
BsaJI	CCNNGG	2 cut(s)	64, 341
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 269
Bse118I	RCCGGY	2 cut(s)	22, 380
Bse1I	ACTGG	1 cut(s)	574
BseBI	CCWGG	2 cut(s)	66, 342
BseDI	CCNNGG	2 cut(s)	64, 341
BseLI	CCNNNNNNNGG	2 cut(s)	266, 269
BseNI	ACTGG	1 cut(s)	574
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	90, 150, 184
BseYI	CCCAGC	2 cut(s)	48, 74
Bsh1236I	CGCG	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	69, 117, 290
BshNI	GGYRCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	5 cut(s)	23, 114, 267, 381, 438
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	266, 269
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	3 cut(s)	69, 117, 290
Bsp143I	GATC	2 cut(s)	6, 92
BspACI	CCGC	6 cut(s)	96, 224, 230, 291, 338, 368
BspANI	GGCC	3 cut(s)	69, 117, 290
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	3 cut(s)	27, 94, 274
BspPI	GGATC	2 cut(s)	87, 100
BspT107I	GGYRCC	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	22, 380
BsrI	ACTGG	1 cut(s)	574
BssAI	RCCGGY	2 cut(s)	22, 380
BssECI	CCNNGG	2 cut(s)	64, 341
BssMI	GATC	2 cut(s)	6, 92
BssNI	GRCGYC	2 cut(s)	26, 102
Bst2UI	CCWGG	2 cut(s)	66, 342
Bst4CI	ACNGT	3 cut(s)	37, 530, 610
BstACI	GRCGYC	2 cut(s)	26, 102
BstC8I	GCNNGC	2 cut(s)	59, 136
BstFNI	CGCG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	9, 95
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	6, 92
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 75, 114, 346
BstNI	CCWGG	2 cut(s)	66, 342
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	64, 340
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	3 cut(s)	90, 150, 184
BstV2I	GAAGAC	3 cut(s)	48, 570, 611
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BstZI	CGGCCG	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	69, 117, 290
BtgZI	GCGATG	1 cut(s)	335
BtrI	CACGTC	1 cut(s)	236
BtsIMutI	CAGTG	2 cut(s)	535, 567
Cac8I	GCNNGC	2 cut(s)	59, 136
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	2 cut(s)	22, 380
Cfr13I	GGNCC	3 cut(s)	68, 272, 383
CviAII	CATG	2 cut(s)	58, 193
CviJI	RGCY	9 cut(s)	69, 108, 117, 141, 175, 290, 312, 320, 494
CviKI_1	RGCY	9 cut(s)	69, 108, 117, 141, 175, 290, 312, 320, 494
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	2 cut(s)	8, 94
DpnII	GATC	2 cut(s)	6, 92
EaeI	YGGCCR	1 cut(s)	288
EagI	CGGCCG	1 cut(s)	288
EciI	GGCGGA	2 cut(s)	213, 357
EclXI	CGGCCG	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	272, 383
Eco52I	CGGCCG	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	64, 340
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	2 cut(s)	61, 196
FaiI	YATR	5 cut(s)	59, 194, 389, 452, 461
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	57, 192
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	79, 139, 173, 291, 338
Fsp4HI	GCNGC	5 cut(s)	79, 139, 173, 291, 338
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	5 cut(s)	79, 139, 173, 291, 338
GsaI	CCCAGC	2 cut(s)	52, 78
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	69, 117, 290
HapII	CCGG	5 cut(s)	23, 114, 267, 381, 438
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	2 cut(s)	26, 102
Hin1II	CATG	2 cut(s)	61, 196
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	1 cut(s)	574
HpaII	CCGG	5 cut(s)	23, 114, 267, 381, 438
HphI	GGTGA	2 cut(s)	12, 249
Hpy166II	GTNNAC	3 cut(s)	33, 272, 430
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	619
Hpy8I	GTNNAC	3 cut(s)	33, 272, 430
Hpy99I	CGWCG	2 cut(s)	41, 182
HpyAV	CCTTC	4 cut(s)	160, 261, 323, 366
HpyCH4III	ACNGT	3 cut(s)	37, 530, 610
HpyCH4IV	ACGT	2 cut(s)	102, 235
HpyCH4V	TGCA	3 cut(s)	57, 172, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 75, 114, 346
HpySE526I	ACGT	2 cut(s)	102, 235
Hsp92I	GRCGYC	2 cut(s)	26, 102
Hsp92II	CATG	2 cut(s)	61, 196
HspAI	GCGC	1 cut(s)	26
KasI	GGCGCC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	6, 92
LmnI	GCTCC	3 cut(s)	66, 146, 325
Lsp1109I	GCAGC	3 cut(s)	90, 150, 184
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	2 cut(s)	102, 235
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	2 cut(s)	8, 94
MboI	GATC	2 cut(s)	6, 92
MboII	GAAGA	4 cut(s)	53, 507, 575, 616
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	1 cut(s)	467
Mly113I	GGCGCC	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	5 cut(s)	23, 114, 267, 381, 438
MspR9I	CCNGG	2 cut(s)	66, 342
MvaI	CCWGG	2 cut(s)	66, 342
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	54, 75, 114, 346
NarI	GGCGCC	1 cut(s)	26
NdeII	GATC	2 cut(s)	6, 92
NlaIII	CATG	2 cut(s)	61, 196
NlaIV	GGNNCC	3 cut(s)	27, 94, 274
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	255
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	574
PkrI	GCNGC	5 cut(s)	80, 140, 174, 292, 339
PluTI	GGCGCC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	64, 340
PspFI	CCCAGC	2 cut(s)	48, 74
PspGI	CCWGG	2 cut(s)	64, 340
PspN4I	GGNNCC	3 cut(s)	27, 94, 274
PspPI	GGNCC	3 cut(s)	68, 272, 383
PsuI	RGATCY	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	488
SatI	GCNGC	5 cut(s)	79, 139, 173, 291, 338
Sau3AI	GATC	2 cut(s)	6, 92
Sau96I	GGNCC	3 cut(s)	68, 272, 383
ScrFI	CCNGG	2 cut(s)	66, 342
SfaNI	GCATC	1 cut(s)	358
SfoI	GGCGCC	1 cut(s)	27
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	2 cut(s)	272, 383
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	467
SsiI	CCGC	6 cut(s)	96, 224, 230, 291, 338, 368
SspDI	GGCGCC	1 cut(s)	25
SspI	AATATT	2 cut(s)	502, 511
StyD4I	CCNGG	2 cut(s)	64, 340
TaaI	ACNGT	3 cut(s)	37, 530, 610
TaiI	ACGT	2 cut(s)	105, 238
TaqI	TCGA	3 cut(s)	5, 39, 156
TasI	AATT	1 cut(s)	467
TauI	GCSGC	2 cut(s)	293, 340
TfiI	GAWTC	1 cut(s)	574
TscAI	CASTG	2 cut(s)	535, 574
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	3 cut(s)	78, 138, 172
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	2 cut(s)	142, 576
TspGWI	ACGGA	2 cut(s)	252, 508
TspRI	CASTG	2 cut(s)	535, 574
VpaK11BI	GGWCC	2 cut(s)	272, 383
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	429
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.