Rh6CG170300

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008277
Physical Location & Seq
Forward (+)
23437624 .. 23454922
17299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG170300.1

Sequence Viewer

Length: 348 bp
ATGAAAGCGGCCGCCGACGACAAGGTGGTCGAAGCTCTCGAGGCTGAGATCAAGGTCGTTGAAGAGGACATACCAAACTATCAGGTTGCAGATGGGTTTCCTTTTGAAATAGTAAACAATGCCGGAGAGCAGACCATAATGCTCAGAAGAGAAGAATTTGATGGAGAAATCATCAAAGTGGCTGTCGATATTCCAAATGTTTCTTCCGCTGAGGACAATGATAATGAAGAGGAGAATGAAGACACTGGGATTCCAATGGTTGTCGAAGCCAACAAAGTCTTCCTTGGTAAAGCTCATATTGTTTGGAAGGTTGAATGCGTCGTAGAAATAGTATTTGAATATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

4.07

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 14 - 81 9.1e-07 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 26
AciI CCGC 3 cut(s) 8, 12, 207
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 155
AgsI TTSAA 4 cut(s) 62, 107, 314, 338
AjuI GAANNNNNNNTTGG 4 cut(s) 187, 219, 263, 295
AluBI AGCT 2 cut(s) 35, 293
AluI AGCT 2 cut(s) 35, 293
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
AvaI CYCGRG 1 cut(s) 38
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BbsI GAAGAC 2 cut(s) 246, 271
BbvCI CCTCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 86, 155
BisI GCNGC 2 cut(s) 9, 12
BlsI GCNGC 2 cut(s) 10, 13
BmeT110I CYCGRG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BpiI GAAGAC 2 cut(s) 246, 271
Bpu10I CCTNAGC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 283
BseMII CTCAG 3 cut(s) 36, 157, 201
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 123
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 3 cut(s) 8, 12, 207
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 3 cut(s) 37, 156, 202
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 283
Bst6I CTCTTC 3 cut(s) 57, 142, 222
BstDEI CTNAG 3 cut(s) 45, 143, 210
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstV2I GAAGAC 2 cut(s) 246, 271
BstZI CGGCCG 1 cut(s) 9
BsuRI GGCC 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 243
CciNI GCGGCCGC 1 cut(s) 9
CseI GACGC 1 cut(s) 307
CviJI RGCY 6 cut(s) 11, 35, 44, 182, 269, 293
CviKI_1 RGCY 6 cut(s) 11, 35, 44, 182, 269, 293
DdeI CTNAG 3 cut(s) 45, 143, 210
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
DrdI GACNNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 9
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 57, 142, 222
EarI CTCTTC 3 cut(s) 57, 142, 222
EclXI CGGCCG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 283
Eco52I CGGCCG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaiI YATR 4 cut(s) 71, 137, 297, 342
FalI AAGNNNNNCTT 2 cut(s) 267, 299
Fnu4HI GCNGC 2 cut(s) 9, 12
Fsp4HI GCNGC 2 cut(s) 9, 12
GluI GCNGC 2 cut(s) 9, 12
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 307
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 2 cut(s) 20, 323
HpyAV CCTTC 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 45, 143, 210
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 3 cut(s) 68, 136, 231
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 7 cut(s) 74, 159, 164, 195, 239, 251, 271
MluCI AATT 1 cut(s) 155
MnlI CCTC 4 cut(s) 34, 58, 205, 223
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 48
NotI GCGGCCGC 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 10, 13
RseI CAYNNNNRTG 1 cut(s) 176
SatI GCNGC 2 cut(s) 9, 12
Sau3AI GATC 1 cut(s) 48
SetI ASST 6 cut(s) 27, 37, 57, 87, 295, 312
Sfr274I CTCGAG 1 cut(s) 38
SgeI CNNG 8 cut(s) 34, 50, 52, 64, 95, 135, 258, 296
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 1 cut(s) 155
SsiI CCGC 3 cut(s) 8, 12, 207
StyI CCWWGG 1 cut(s) 283
TaqI TCGA 4 cut(s) 30, 39, 186, 264
TasI AATT 1 cut(s) 155
TauI GCSGC 2 cut(s) 11, 14
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 17, 240, 252
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.