Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008277

Physical Location & Seq

Genomic Coordinates Forward (+)

25232228 .. 25233885

Gene Structure 1658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTCTGTTCTCGATGCTTCGCAGGCATACCTACTCCGCACTGGCTCTCGCCTCACGCGCTGTCGGATCAGCAAGGACCTTTCACGGCGCAATCTCCACCGTCCCTACTTTCAGCGGTGATCACAGCCCGAGAAGCTCTTTTCCAACTCGGCGATTCTCTACGGCCACCGCCACCGCCACCGCCACGGAAGTGATCGGCAATGAAAGCCTGAACGGAGGCCTGGAGTCTGCGATCAAGTGTGCCCAAGAGCGTAAAATCAAAATTCCCGAGGTCCCAGATGAGTTTCCTTTTGAAATAATAGACATTCCTGGAGAAAAAACCATTCTACTGAAAAGACAATTCCAAGGCGAAACCATCCAAGTGGGTGTTGATGCTCCTCATGTTTTTCCTGCGGACGAAGACAGCGACGAGTACGAGAATGACGACCCTGGCATTCCAATGGTTGTGAGTATTTCCAAAGAAAATGGGATGCAATTGGAGTTTGGTGTCACTGGTTTTGAAGAAGAGGTTTCGATTGACAGCTTATCGATCGTCCATCCCGATCATTCTCCAGAACAGTTTCCGTATGATGGGCCTGAATTTCATGAGTTGGATGAGGGCTTGCAGAATGCTTTTTACAAGTATCTCGAGCCTCGAGGGATCCAGTGCAGTATGACTGTCTTCTTGACTGATTACATGAGGAAGAAAGACAACAAAGAGTACCTGCTTTGGTTGAAGAACCTCAAGGGTTATATTGAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

249

Amino Acids

27.76

Weight (kDa)

4.82

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02050
fragaria_vesca	FvH4_6g13000
malus_domestica	MD00G1141400.v1.1 MD12G1150500.v1.1
prunus_persica	Prupe.6G262100_v2.0.a1
pyrus_communis	pycom12g14430
rosa_chinensis	RchiOBHm_Chr3g0465131
rosa_laevigata	RLG00000008900 RLG00000024654
rosa_multiflora	Rmu_sc0012005.1_g000006 Rmu_ssc0000252.1_g000039
rosa_roxburghii	Rroxscaffold_3G00232030 Rroxscaffold_6G00415220
rosa_rugosa	Rorug03G0075700
rosa_samantha	Rh3BG139300 Rh3CG141300 Rh3CG149600 Rh3CG149700 Rh3DG140600 Rh6CG170300 Rh6DG162600 Rh7AG360700
rosa_wichuraiana	Rw3G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	714
AccII	CGCG	1 cut(s)	60
AciI	CCGC	6 cut(s)	39, 117, 171, 177, 183, 395
AclWI	GGATC	3 cut(s)	76, 637, 650
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	264, 581
AfaI	GTAC	2 cut(s)	416, 704
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	296, 503, 718
AjnI	CCWGG	3 cut(s)	222, 310, 430
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	2 cut(s)	138, 525
AluI	AGCT	2 cut(s)	138, 525
AlwI	GGATC	3 cut(s)	76, 637, 650
Ama87I	CYCGRG	4 cut(s)	130, 269, 629, 636
AoxI	GGCC	3 cut(s)	165, 220, 575
ApoI	RAATTY	2 cut(s)	264, 581
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	2 cut(s)	62, 92
AspS9I	GGNCC	3 cut(s)	78, 274, 575
AsuHPI	GGTGA	1 cut(s)	131
AvaI	CYCGRG	4 cut(s)	130, 269, 629, 636
AvaII	GGWCC	2 cut(s)	78, 274
BaeGI	GKGCMC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	642
BbsI	GAAGAC	2 cut(s)	408, 655
BccI	CCATC	3 cut(s)	365, 546, 566
BceAI	ACGGC	2 cut(s)	103, 180
BciT130I	CCWGG	3 cut(s)	224, 312, 432
BclI	TGATCA	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	714
Bme1390I	CCNGG	3 cut(s)	224, 312, 432
Bme18I	GGWCC	2 cut(s)	78, 274
BmeT110I	CYCGRG	4 cut(s)	130, 269, 629, 636
BmgT120I	GGNCC	3 cut(s)	78, 274, 575
BmiI	GGNNCC	2 cut(s)	276, 644
BmrFI	CCNGG	3 cut(s)	224, 312, 432
BmsI	GCATC	3 cut(s)	6, 364, 462
BpiI	GAAGAC	2 cut(s)	408, 655
BpmI	CTGGAG	3 cut(s)	245, 333, 537
BpuEI	CTTGAG	1 cut(s)	710
Bsa29I	ATCGAT	1 cut(s)	530
BsaJI	CCNNGG	4 cut(s)	186, 270, 346, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse1I	ACTGG	3 cut(s)	48, 499, 646
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	3 cut(s)	224, 312, 432
BseCI	ATCGAT	1 cut(s)	530
BseDI	CCNNGG	4 cut(s)	186, 270, 346, 430
BseGI	GGATG	4 cut(s)	357, 477, 538, 601
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMI	GCAATG	1 cut(s)	208
BseNI	ACTGG	3 cut(s)	48, 499, 646
BseRI	GAGGAG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	167, 222, 577
BshVI	ATCGAT	1 cut(s)	530
BsiEI	CGRYCG	1 cut(s)	534
BsiHKCI	CYCGRG	4 cut(s)	130, 269, 629, 636
BslFI	GGGAC	2 cut(s)	89, 260
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	89, 260
BsmI	GAATGC	2 cut(s)	435, 616
BsnI	GGCC	3 cut(s)	167, 222, 577
BsoBI	CYCGRG	4 cut(s)	130, 269, 629, 636
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	7 cut(s)	68, 121, 195, 234, 531, 544, 642
BspACI	CCGC	6 cut(s)	39, 117, 171, 177, 183, 395
BspANI	GGCC	3 cut(s)	167, 222, 577
BspDI	ATCGAT	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	276, 644
BspMI	ACCTGC	1 cut(s)	714
BspPI	GGATC	3 cut(s)	76, 637, 650
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	48, 499, 646
BssECI	CCNNGG	4 cut(s)	186, 270, 346, 430
BssMI	GATC	7 cut(s)	68, 121, 195, 234, 531, 544, 642
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	3 cut(s)	224, 312, 432
Bst4CI	ACNGT	3 cut(s)	103, 561, 661
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	26, 605
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	4 cut(s)	357, 477, 538, 601
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	62, 92
BstKTI	GATC	7 cut(s)	71, 124, 198, 237, 534, 547, 645
BstMBI	GATC	7 cut(s)	68, 121, 195, 234, 531, 544, 642
BstMCI	CGRYCG	1 cut(s)	534
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 59, 135, 207
BstNI	CCWGG	3 cut(s)	224, 312, 432
BstSCI	CCNGG	3 cut(s)	222, 310, 430
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	1 cut(s)	60
BstV2I	GAAGAC	2 cut(s)	408, 655
BstX2I	RGATCY	1 cut(s)	642
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	642
Bsu15I	ATCGAT	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	167, 222, 577
BsuTUI	ATCGAT	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	4 cut(s)	357, 477, 538, 601
BtsIMutI	CAGTG	3 cut(s)	41, 492, 653
BveI	ACCTGC	1 cut(s)	714
Cac8I	GCNNGC	2 cut(s)	26, 605
CciI	TCATGA	1 cut(s)	586
CfoI	GCGC	2 cut(s)	62, 92
Cfr13I	GGNCC	3 cut(s)	78, 274, 575
ClaI	ATCGAT	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	415, 703
CviAII	CATG	3 cut(s)	383, 587, 679
CviQI	GTAC	2 cut(s)	415, 703
DpnI	GATC	7 cut(s)	70, 123, 197, 236, 533, 546, 644
DpnII	GATC	7 cut(s)	68, 121, 195, 234, 531, 544, 642
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	78, 274
Eco88I	CYCGRG	4 cut(s)	130, 269, 629, 636
EcoO109I	RGGNCCY	2 cut(s)	78, 274
EcoRII	CCWGG	3 cut(s)	222, 310, 430
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	3 cut(s)	386, 590, 682
FaiI	YATR	7 cut(s)	30, 384, 570, 588, 656, 680, 735
FaqI	GGGAC	2 cut(s)	89, 260
FatI	CATG	3 cut(s)	382, 586, 678
FbaI	TGATCA	1 cut(s)	121
FokI	GGATG	4 cut(s)	344, 484, 525, 608
GlaI	GCGC	2 cut(s)	61, 91
GsuI	CTGGAG	3 cut(s)	245, 333, 537
HaeIII	GGCC	3 cut(s)	167, 222, 577
HhaI	GCGC	2 cut(s)	62, 92
Hin1II	CATG	3 cut(s)	386, 590, 682
Hin6I	GCGC	2 cut(s)	60, 90
HinP1I	GCGC	2 cut(s)	60, 90
HinfI	GANTC	2 cut(s)	156, 227
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	7 cut(s)	13, 269, 542, 554, 587, 629, 667
Hpy99I	CGWCG	1 cut(s)	413
HpyCH4III	ACNGT	3 cut(s)	103, 561, 661
HpyCH4V	TGCA	3 cut(s)	475, 607, 651
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 59, 135, 207
Hsp92II	CATG	3 cut(s)	386, 590, 682
HspAI	GCGC	2 cut(s)	60, 90
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	7 cut(s)	68, 121, 195, 234, 531, 544, 642
LmnI	GCTCC	1 cut(s)	382
LweI	GCATC	3 cut(s)	6, 364, 462
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	7 cut(s)	70, 123, 197, 236, 533, 546, 644
MboI	GATC	7 cut(s)	68, 121, 195, 234, 531, 544, 642
MboII	GAAGA	6 cut(s)	413, 515, 518, 655, 697, 730
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	1 cut(s)	642
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	4 cut(s)	264, 341, 476, 581
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	3 cut(s)	46, 170, 573
MroXI	GAANNNNTTC	1 cut(s)	561
MslI	CAYNNNNRTG	3 cut(s)	191, 362, 440
MspA1I	CMGCKG	1 cut(s)	117
MspR9I	CCNGG	3 cut(s)	224, 312, 432
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	2 cut(s)	435, 616
MvaI	CCWGG	3 cut(s)	224, 312, 432
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	4 cut(s)	25, 59, 135, 207
NdeII	GATC	7 cut(s)	68, 121, 195, 234, 531, 544, 642
NlaIII	CATG	3 cut(s)	386, 590, 682
NlaIV	GGNNCC	2 cut(s)	276, 644
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	490
OliI	CACNNNNGTG	1 cut(s)	191
PaeR7I	CTCGAG	2 cut(s)	629, 636
PagI	TCATGA	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	3 cut(s)	405, 423, 540
PctI	GAATGC	2 cut(s)	435, 616
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	310
Ple19I	CGATCG	1 cut(s)	534
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	2 cut(s)	78, 274
Psp5II	RGGWCCY	2 cut(s)	78, 274
Psp6I	CCWGG	3 cut(s)	222, 310, 430
PspGI	CCWGG	3 cut(s)	222, 310, 430
PspN4I	GGNNCC	2 cut(s)	276, 644
PspPI	GGNCC	3 cut(s)	78, 274, 575
PspPPI	RGGWCCY	2 cut(s)	78, 274
PspXI	VCTCGAGB	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	642
PvuI	CGATCG	1 cut(s)	534
RsaI	GTAC	2 cut(s)	416, 704
RsaNI	GTAC	2 cut(s)	415, 703
RseI	CAYNNNNRTG	3 cut(s)	191, 362, 440
Sau3AI	GATC	7 cut(s)	68, 121, 195, 234, 531, 544, 642
Sau96I	GGNCC	3 cut(s)	78, 274, 575
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	224, 312, 432
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	8 cut(s)	35, 83, 140, 276, 513, 527, 708, 726
SfaNI	GCATC	3 cut(s)	6, 364, 462
Sfr274I	CTCGAG	2 cut(s)	629, 636
SinI	GGWCC	2 cut(s)	78, 274
SlaI	CTCGAG	2 cut(s)	629, 636
SmiMI	CAYNNNNRTG	3 cut(s)	191, 362, 440
SmlI	CTYRAG	3 cut(s)	629, 636, 725
SmoI	CTYRAG	3 cut(s)	629, 636, 725
Sse9I	AATT	4 cut(s)	264, 341, 476, 581
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	6 cut(s)	39, 117, 171, 177, 183, 395
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	222, 310, 430
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	3 cut(s)	103, 561, 661
TaqI	TCGA	5 cut(s)	14, 515, 530, 630, 637
TasI	AATT	4 cut(s)	264, 341, 476, 581
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	3 cut(s)	48, 499, 653
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	219, 575
TspGWI	ACGGA	3 cut(s)	203, 231, 555
TspRI	CASTG	3 cut(s)	48, 499, 653
VpaK11BI	GGWCC	2 cut(s)	78, 274
XapI	RAATTY	2 cut(s)	264, 581
XhoI	CTCGAG	2 cut(s)	629, 636
XmnI	GAANNNNTTC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.