Rh3CG149600

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008277
Physical Location & Seq
Reverse (-)
12477759 .. 12478286
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG149600.1

Sequence Viewer

Length: 426 bp
ATGCTCAGAAGAGAATTCGATGGAGAAATCATCAAAGTGGCGGTCGATATTCCTAATGTTTCTTCCACCGAAGACAATGATGATGAGGAGGAGAATGAAGACACTGGGATTCCAATGGTTGTGAGTGTTTCGAAAGGAAATGAGCAGGAGCTGGAGTTTGGGCTCACTGCCTTTTCTGATGAGATTTGCGTCGATAGCTTGTCGATGAGGCAGCCAGAGGATTCTGAAGGATCGAAACGGATTGCATATGAAGGGCCTAATTTTAGTGACTTGGATGAGAGCTTCCAGAAGGCCTTGCAGAAATATCTGGAGGTTCGAGGGATCAAGTCGAGCATAACTAAGTTCTTGCAGGAGTATATGAGGAACAAAGACTTCAGAGAGTACTTGATGTGGTTGAAGAACCTAAAAGGTTTTATTGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

141

Amino Acids

16.29

Weight (kDa)

4.39

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 2 - 139 9.6e-35 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 238, 329
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 2 cut(s) 246, 358
AfaI GTAC 1 cut(s) 383
AgsI TTSAA 1 cut(s) 397
AluBI AGCT 3 cut(s) 151, 198, 282
AluI AGCT 3 cut(s) 151, 198, 282
AlwI GGATC 2 cut(s) 238, 329
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 2 cut(s) 254, 291
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspS9I GGNCC 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 131
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 78, 105
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 14
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
BmcAI AGTACT 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 254
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 78, 105
BpmI CTGGAG 2 cut(s) 173, 329
Bpu14I TTCGAA 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 2 cut(s) 101, 104
BseXI GCAGC 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 256, 293
BsiEI CGRYCG 1 cut(s) 45
BsnI GGCC 2 cut(s) 256, 293
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 230, 321
BspACI CCGC 1 cut(s) 41
BspANI GGCC 2 cut(s) 256, 293
BspCNI CTCAG 1 cut(s) 18
BspPI GGATC 2 cut(s) 238, 329
BspT104I TTCGAA 1 cut(s) 131
BsrI ACTGG 1 cut(s) 109
BssMI GATC 2 cut(s) 230, 321
Bst6I CTCTTC 1 cut(s) 4
BstBI TTCGAA 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 5, 339
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 2 cut(s) 233, 324
BstMBI GATC 2 cut(s) 230, 321
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 2 cut(s) 78, 105
BsuRI GGCC 2 cut(s) 256, 293
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 102, 165
CaiI CAGNNNCTG 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 382
CviJI RGCY 7 cut(s) 151, 163, 198, 214, 256, 282, 293
CviKI_1 RGCY 7 cut(s) 151, 163, 198, 214, 256, 282, 293
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 2 cut(s) 5, 339
DpnI GATC 2 cut(s) 232, 323
DpnII GATC 2 cut(s) 230, 321
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Eco147I AGGCCT 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 165
Eco57I CTGAAG 2 cut(s) 246, 358
EcoO109I RGGNCCY 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 165
FaiI YATR 5 cut(s) 247, 249, 335, 357, 359
FauNDI CATATG 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 212
GsuI CTGGAG 2 cut(s) 173, 329
HaeIII GGCC 2 cut(s) 256, 293
HgaI GACGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 109, 221
Hpy188I TCNGA 4 cut(s) 8, 178, 226, 377
Hpy188III TCNNGA 2 cut(s) 286, 308
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 221, 245, 283
HpyCH4V TGCA 3 cut(s) 245, 298, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 2 cut(s) 5, 339
Kzo9I GATC 2 cut(s) 230, 321
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 7 cut(s) 90, 131, 137, 228, 293, 299, 335
Lsp1109I GCAGC 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 266
MalI GATC 2 cut(s) 232, 323
MboI GATC 2 cut(s) 230, 321
MboII GAAGA 5 cut(s) 21, 54, 83, 110, 409
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 2 cut(s) 14, 259
MnlI CCTC 7 cut(s) 79, 82, 201, 211, 304, 311, 354
MslI CAYNNNNRTG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeI CATATG 1 cut(s) 247
NdeII GATC 2 cut(s) 230, 321
NmuCI GTSAC 1 cut(s) 266
NspV TTCGAA 1 cut(s) 131
PceI AGGCCT 1 cut(s) 293
PfeI GAWTC 2 cut(s) 109, 221
PkrI GCNGC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 254
PstNI CAGNNNCTG 1 cut(s) 151
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 2 cut(s) 230, 321
Sau96I GGNCC 1 cut(s) 254
ScaI AGTACT 1 cut(s) 383
SduI GDGCHC 1 cut(s) 165
SetI ASST 6 cut(s) 153, 200, 284, 315, 405, 412
SfuI TTCGAA 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 2 cut(s) 14, 259
SseBI AGGCCT 1 cut(s) 293
SsiI CCGC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 293
TaqI TCGA 8 cut(s) 18, 45, 131, 192, 203, 233, 316, 329
TasI AATT 2 cut(s) 14, 259
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 2 cut(s) 109, 221
TscAI CASTG 2 cut(s) 109, 172
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 111, 264
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 2 cut(s) 109, 172
XapI RAATTY 1 cut(s) 14
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.