AT5G02050

Mitochondrial glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008277
Physical Location & Seq
Reverse (-)
402979 .. 404346
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02050.1

Sequence Viewer

Length: 804 bp
ATGGCGTTGAGCACCGTGTTTCGTCGAGCTTCGTCAACAGTAGCCAATCTTGCTTTCCGTGCGGGTAGATCTCCGGTTAGCTTCCGCAGTGGCGCTGTCTCCGTCGAGAGGCTGATTCGTGGTAGCCACCAGATCAGGCGTGGATCGGTTAGTTCATTCTCAGTCTCGAGCTTTTCGACGGAAAGTGCGATCTCTAAAACAACCGCCGACGAGAATCTTGTTAGCGTTATCGAATCTGAAATCGAATGCGCCGTCGCAGAGGAGGCTCCTCATGACACTGACTTCTTGGAAGATAAGCCAGAAGGGTTTCCATTTGAAATCATTGATAATTCAGGGGAGAGAACTGTGTTGCTGACAAGGAAATTTGAGGATGAAACCATCCAAGTGGAAGTTGACTCTGTTGCTTCTTATGATGATGAAGATGAAGAAGAGGAAGCAGAACCAAACAATGAAGAAGACGATGAAGATCAAGAGAGCTCGGGTAAAGTCCGGGTTCCGATGGTTGTTAGTGTGCAGAAAGGTGATGGTGTGTGTCTTGAGTTTGGAGTCAGCGCATACCCGGATGAGATTGTGATTGATAGTTTATCGATCAAACAACCGCAAGGATCTGATAATGACCTTGCTTACGAAGGACCTGACTTTGATGACTTGGATGAGAATTTGCAGAAGGCTTTCCACAGGTACTTGGAGATCAGAGGTATTAAACCAAGCTTCACTACCTTTCTGGCAGATTATGTGGCCAACAAAGATAGCAGAGAGTATCTTCAATGGCTCAAGGATCTCAAGTCTTTTGTCGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

267

Amino Acids

29.76

Weight (kDa)

4.33

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 77 - 265 2.7e-52 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 62, 85, 204, 599
AclWI GGATC 3 cut(s) 151, 613, 786
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 2 cut(s) 362, 658
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 2 cut(s) 317, 767
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 5 cut(s) 29, 81, 171, 477, 711
AluI AGCT 5 cut(s) 29, 81, 171, 477, 711
Alw21I GWGCWC 2 cut(s) 14, 479
Alw26I GTCTC 2 cut(s) 103, 169
AlwI GGATC 3 cut(s) 151, 613, 786
Ama87I CYCGRG 2 cut(s) 166, 478
AoxI GGCC 1 cut(s) 738
ApoI RAATTY 2 cut(s) 362, 658
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
Asp700I GAANNNNTTC 2 cut(s) 306, 671
AspLEI GCGC 3 cut(s) 95, 251, 554
AspS9I GGNCC 1 cut(s) 632
AsuC2I CCSGG 2 cut(s) 491, 560
AsuHPI GGTGA 1 cut(s) 533
AvaI CYCGRG 2 cut(s) 166, 478
AvaII GGWCC 1 cut(s) 632
BalI TGGCCA 1 cut(s) 740
BanII GRGCYC 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 14, 479
BccI CCATC 3 cut(s) 386, 493, 518
BceAI ACGGC 1 cut(s) 236
BcnI CCSGG 2 cut(s) 491, 560
BcoDI GTCTC 2 cut(s) 103, 169
BfoI RGCGCY 1 cut(s) 96
BglII AGATCT 1 cut(s) 68
Bme1390I CCNGG 2 cut(s) 491, 560
Bme18I GGWCC 1 cut(s) 632
BmeT110I CYCGRG 2 cut(s) 166, 478
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 2 cut(s) 267, 495
BmrFI CCNGG 2 cut(s) 491, 560
BpiI GAAGAC 1 cut(s) 462
BpuEI CTTGAG 3 cut(s) 557, 758, 767
BpuMI CCSGG 2 cut(s) 491, 560
Bsa29I ATCGAT 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 587
BseGI GGATG 4 cut(s) 376, 378, 568, 658
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 2 cut(s) 258, 275
BsgI GTGCAG 1 cut(s) 533
BshFI GGCC 1 cut(s) 740
BshVI ATCGAT 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 14, 479
BsiHKCI CYCGRG 2 cut(s) 166, 478
BsiSI CCGG 3 cut(s) 74, 490, 560
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 103, 169
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 740
BsoBI CYCGRG 2 cut(s) 166, 478
Bsp1286I GDGCHC 2 cut(s) 14, 479
Bsp143I GATC 9 cut(s) 68, 132, 143, 189, 466, 588, 605, 690, 778
BspACI CCGC 4 cut(s) 62, 85, 204, 599
BspANI GGCC 1 cut(s) 740
BspCNI CTCAG 1 cut(s) 173
BspDI ATCGAT 1 cut(s) 587
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 267, 495
BspPI GGATC 3 cut(s) 151, 613, 786
BssMI GATC 9 cut(s) 68, 132, 143, 189, 466, 588, 605, 690, 778
Bst4CI ACNGT 3 cut(s) 16, 40, 346
Bst6I CTCTTC 1 cut(s) 423
BstDEI CTNAG 1 cut(s) 160
BstF5I GGATG 4 cut(s) 376, 378, 568, 658
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 3 cut(s) 95, 251, 554
BstKTI GATC 9 cut(s) 71, 135, 146, 192, 469, 591, 608, 693, 781
BstMAI GTCTC 2 cut(s) 103, 169
BstMBI GATC 9 cut(s) 68, 132, 143, 189, 466, 588, 605, 690, 778
BstMWI GCNNNNNNNGC 3 cut(s) 50, 59, 263
BstSCI CCNGG 2 cut(s) 489, 558
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 3 cut(s) 68, 605, 778
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 3 cut(s) 68, 605, 778
Bsu15I ATCGAT 1 cut(s) 587
BsuRI GGCC 1 cut(s) 740
BsuTUI ATCGAT 1 cut(s) 587
BtsCI GGATG 4 cut(s) 376, 378, 568, 658
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 94, 276
CciI TCATGA 1 cut(s) 271
CfoI GCGC 3 cut(s) 95, 251, 554
Cfr13I GGNCC 1 cut(s) 632
ClaI ATCGAT 1 cut(s) 587
Csp6I GTAC 1 cut(s) 682
CviAII CATG 1 cut(s) 272
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 1 cut(s) 160
DpnI GATC 9 cut(s) 70, 134, 145, 191, 468, 590, 607, 692, 780
DpnII GATC 9 cut(s) 68, 132, 143, 189, 466, 588, 605, 690, 778
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Ecl136II GAGCTC 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 632
Eco53kI GAGCTC 1 cut(s) 477
Eco88I CYCGRG 2 cut(s) 166, 478
EcoICRI GAGCTC 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 632
EcoT38I GRGCYC 1 cut(s) 479
FaeI CATG 1 cut(s) 275
FaiI YATR 4 cut(s) 273, 411, 556, 735
FatI CATG 1 cut(s) 271
FauI CCCGC 1 cut(s) 55
FokI GGATG 4 cut(s) 365, 383, 575, 665
FriOI GRGCYC 1 cut(s) 479
GlaI GCGC 3 cut(s) 94, 250, 553
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 740
HapII CCGG 3 cut(s) 74, 490, 560
HhaI GCGC 3 cut(s) 95, 251, 554
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 3 cut(s) 93, 249, 552
HinP1I GCGC 3 cut(s) 93, 249, 552
HincII GTYRAC 2 cut(s) 36, 394
HindII GTYRAC 2 cut(s) 36, 394
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 5 cut(s) 115, 214, 233, 395, 546
HpaII CCGG 3 cut(s) 74, 490, 560
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 2 cut(s) 36, 394
Hpy188I TCNGA 4 cut(s) 238, 498, 610, 695
Hpy188III TCNNGA 6 cut(s) 106, 166, 272, 470, 536, 796
Hpy8I GTNNAC 2 cut(s) 36, 394
Hpy99I CGWCG 5 cut(s) 27, 107, 181, 212, 257
HpyAV CCTTC 3 cut(s) 296, 623, 661
HpyCH4III ACNGT 3 cut(s) 16, 40, 346
HpyCH4V TGCA 2 cut(s) 514, 664
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 59, 263
HpyF3I CTNAG 1 cut(s) 160
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 3 cut(s) 93, 249, 552
Kzo9I GATC 9 cut(s) 68, 132, 143, 189, 466, 588, 605, 690, 778
LmnI GCTCC 1 cut(s) 271
MalI GATC 9 cut(s) 70, 134, 145, 191, 468, 590, 607, 692, 780
MboI GATC 9 cut(s) 68, 132, 143, 189, 466, 588, 605, 690, 778
MboII GAAGA 8 cut(s) 302, 431, 437, 440, 464, 467, 476, 755
MflI RGATCY 3 cut(s) 68, 605, 778
MhlI GDGCHC 2 cut(s) 14, 479
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 3 cut(s) 328, 362, 658
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 2 cut(s) 389, 555
MnlI CCTC 7 cut(s) 102, 253, 256, 279, 361, 424, 689
Mox20I TGGCCA 1 cut(s) 740
MroXI GAANNNNTTC 2 cut(s) 306, 671
MscI TGGCCA 1 cut(s) 740
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 740
MspI CCGG 3 cut(s) 74, 490, 560
MspR9I CCNGG 2 cut(s) 491, 560
Mva1269I GAATGC 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 50, 59, 263
NciI CCSGG 2 cut(s) 491, 560
NdeII GATC 9 cut(s) 68, 132, 143, 189, 466, 588, 605, 690, 778
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 2 cut(s) 267, 495
PaeR7I CTCGAG 1 cut(s) 166
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 3 cut(s) 173, 185, 249
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 2 cut(s) 306, 671
PfeI GAWTC 3 cut(s) 115, 214, 233
PleI GAGTC 2 cut(s) 389, 554
PpsI GAGTC 2 cut(s) 389, 554
PpuMI RGGWCCY 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 632
PspN4I GGNNCC 2 cut(s) 267, 495
PspPI GGNCC 1 cut(s) 632
PspPPI RGGWCCY 1 cut(s) 632
PsuI RGATCY 3 cut(s) 68, 605, 778
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 479
SaqAI TTAA 1 cut(s) 702
Sau3AI GATC 9 cut(s) 68, 132, 143, 189, 466, 588, 605, 690, 778
Sau96I GGNCC 1 cut(s) 632
SchI GAGTC 2 cut(s) 389, 555
ScrFI CCNGG 2 cut(s) 491, 560
SduI GDGCHC 2 cut(s) 14, 479
Sfr274I CTCGAG 1 cut(s) 166
SinI GGWCC 1 cut(s) 632
SlaI CTCGAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 4 cut(s) 166, 536, 773, 782
SmoI CTYRAG 4 cut(s) 166, 536, 773, 782
Sse9I AATT 3 cut(s) 328, 362, 658
SsiI CCGC 4 cut(s) 62, 85, 204, 599
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 489, 558
TaaI ACNGT 3 cut(s) 16, 40, 346
TaqI TCGA 8 cut(s) 25, 105, 167, 176, 231, 243, 587, 795
TasI AATT 3 cut(s) 328, 362, 658
TfiI GAWTC 3 cut(s) 115, 214, 233
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 2 cut(s) 94, 283
TspDTI ATGAA 6 cut(s) 144, 387, 432, 438, 465, 477
TspGWI ACGGA 3 cut(s) 47, 91, 194
TspRI CASTG 2 cut(s) 94, 283
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 2 cut(s) 362, 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XhoI CTCGAG 1 cut(s) 166
XmnI GAANNNNTTC 2 cut(s) 306, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.