Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000252.1

Orthogroup ID

OG0008277

Physical Location & Seq

Genomic Coordinates Forward (+)

236766 .. 237481

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000252.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgtcgagcccaagaccctcaccgacgccgtccaccgtccaagactggccctggcccacccagccgcaacaacttcggatccgccgacgtcagcccctccggcctcctcgcattcccggccggcagctccatctccgtcatcgacacccgctcaatgaagctcgtcgtctccctccactgagccttccagctcccatctcctcgccgccggcgaccgccagggccgcatcgccctcctcgacctccgcctcaagggaggctgcagatgggtttccttttgaaatagtagacaatgccggagagcagaccataatgctcagaagagaatttgatggagaaatcatcagagtggctgtcgatattcctaatattcctaccgctgacgacaatgatgatgaggaggagaatgaagacactgggattccaatggttgtgagtgtttcaatggagaagagactgttgttgtctggagaagaaagagagaagaggaagagttgtcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

167

Amino Acids

18.78

Weight (kDa)

6.85

Isoelectric Point (pI)

83.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02050
fragaria_vesca	FvH4_6g13000
malus_domestica	MD00G1141400.v1.1 MD12G1150500.v1.1
prunus_persica	Prupe.6G262100_v2.0.a1
pyrus_communis	pycom12g14430
rosa_chinensis	RchiOBHm_Chr3g0465131
rosa_laevigata	RLG00000008900 RLG00000024654
rosa_multiflora	Rmu_sc0012005.1_g000006 Rmu_ssc0000252.1_g000039
rosa_roxburghii	Rroxscaffold_3G00232030 Rroxscaffold_6G00415220
rosa_rugosa	Rorug03G0075700
rosa_samantha	Rh3BG139300 Rh3CG141300 Rh3CG149600 Rh3CG149700 Rh3DG140600 Rh6CG170300 Rh6DG162600 Rh7AG360700
rosa_wichuraiana	Rw3G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	8 cut(s)	65, 82, 149, 206, 216, 225, 246, 378
AclWI	GGATC	2 cut(s)	73, 86
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	2 cut(s)	26, 88
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	281, 444
AjnI	CCWGG	2 cut(s)	50, 218
AluBI	AGCT	3 cut(s)	127, 161, 191
AluI	AGCT	3 cut(s)	127, 161, 191
Alw26I	GTCTC	2 cut(s)	173, 448
AlwI	GGATC	2 cut(s)	73, 86
AoxI	GGCC	5 cut(s)	47, 53, 101, 118, 222
ApeKI	GCWGC	2 cut(s)	124, 260
ApoI	RAATTY	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	48, 54, 222
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	136, 247
BccI	CCATC	4 cut(s)	138, 203, 260, 326
BceAI	ACGGC	1 cut(s)	13
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	2 cut(s)	52, 220
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	173, 448
BfmI	CTRYAG	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	100
BisI	GCNGC	5 cut(s)	65, 125, 206, 225, 261
BlsI	GCNGC	5 cut(s)	66, 126, 207, 226, 262
Bme1390I	CCNGG	3 cut(s)	52, 117, 220
BmgT120I	GGNCC	3 cut(s)	48, 54, 222
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	52, 117, 220
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	117
BsaHI	GRCGYC	2 cut(s)	26, 88
BsaJI	CCNNGG	2 cut(s)	50, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	2 cut(s)	120, 208
Bse1I	ACTGG	2 cut(s)	50, 421
BseBI	CCWGG	2 cut(s)	52, 220
BseDI	CCNNGG	2 cut(s)	50, 219
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	170, 331
BseNI	ACTGG	2 cut(s)	50, 421
BseRI	GAGGAG	5 cut(s)	96, 190, 226, 413, 416
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	136, 247
BseYI	CCCAGC	1 cut(s)	60
Bsh1285I	CGRYCG	2 cut(s)	121, 216
BshFI	GGCC	5 cut(s)	49, 55, 103, 120, 224
BsiEI	CGRYCG	2 cut(s)	121, 216
BsiSI	CCGG	5 cut(s)	100, 117, 121, 209, 297
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	173, 448
BsmBI	CGTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	5 cut(s)	49, 55, 103, 120, 224
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	8 cut(s)	65, 82, 149, 206, 216, 225, 246, 378
BspANI	GGCC	5 cut(s)	49, 55, 103, 120, 224
BspCNI	CTCAG	2 cut(s)	171, 330
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	73, 86
BsrBI	CCGCTC	1 cut(s)	151
BsrFI	RCCGGY	2 cut(s)	120, 208
BsrI	ACTGG	2 cut(s)	50, 421
BssAI	RCCGGY	2 cut(s)	120, 208
BssECI	CCNNGG	2 cut(s)	50, 219
BssMI	GATC	1 cut(s)	78
BssNI	GRCGYC	2 cut(s)	26, 88
Bst2UI	CCWGG	2 cut(s)	52, 220
Bst4CI	ACNGT	2 cut(s)	37, 459
Bst6I	CTCTTC	4 cut(s)	316, 446, 479, 485
BstACI	GRCGYC	2 cut(s)	26, 88
BstC8I	GCNNGC	2 cut(s)	122, 210
BstDEI	CTNAG	2 cut(s)	179, 317
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	2 cut(s)	173, 448
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	2 cut(s)	121, 216
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 100, 117, 224
BstNI	CCWGG	2 cut(s)	52, 220
BstSCI	CCNGG	3 cut(s)	50, 115, 218
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	136, 247
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	5 cut(s)	49, 55, 103, 120, 224
BtgZI	GCGATG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	176, 414
Cac8I	GCNNGC	2 cut(s)	122, 210
Cfr10I	RCCGGY	2 cut(s)	120, 208
Cfr13I	GGNCC	3 cut(s)	48, 54, 222
CseI	GACGC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	179, 317
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	118
EagI	CGGCCG	1 cut(s)	118
Eam1104I	CTCTTC	4 cut(s)	316, 446, 479, 485
EarI	CTCTTC	4 cut(s)	316, 446, 479, 485
EciI	GGCGGA	2 cut(s)	71, 235
EclXI	CGGCCG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	50, 218
EcoT38I	GRGCYC	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	173
FaiI	YATR	1 cut(s)	311
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	5 cut(s)	65, 125, 206, 225, 261
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	5 cut(s)	65, 125, 206, 225, 261
GluI	GCNGC	5 cut(s)	65, 125, 206, 225, 261
GsaI	CCCAGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	5 cut(s)	49, 55, 103, 120, 224
HapII	CCGG	5 cut(s)	100, 117, 121, 209, 297
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	2 cut(s)	26, 88
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	5 cut(s)	100, 117, 121, 209, 297
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	33, 289
Hpy188I	TCNGA	3 cut(s)	78, 320, 347
Hpy188III	TCNNGA	1 cut(s)	468
Hpy8I	GTNNAC	2 cut(s)	33, 289
Hpy99I	CGWCG	3 cut(s)	28, 90, 168
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	37, 459
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 100, 117, 224
HpyF3I	CTNAG	2 cut(s)	179, 317
HpySE526I	ACGT	1 cut(s)	88
Hsp92I	GRCGYC	2 cut(s)	26, 88
KroI	GCCGGC	2 cut(s)	120, 208
KroNI	GCCGGC	2 cut(s)	122, 210
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	132, 196
Lsp1109I	GCAGC	2 cut(s)	136, 247
LweI	GCATC	1 cut(s)	236
MaeII	ACGT	1 cut(s)	88
MalI	GATC	1 cut(s)	80
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	1 cut(s)	78
MboII	GAAGA	6 cut(s)	333, 422, 463, 485, 496, 502
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	326
MreI	CGCCGGCG	1 cut(s)	208
MroNI	GCCGGC	2 cut(s)	120, 208
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	5 cut(s)	100, 117, 121, 209, 297
MspR9I	CCNGG	3 cut(s)	52, 117, 220
Mva1269I	GAATGC	1 cut(s)	111
MvaI	CCWGG	2 cut(s)	52, 220
MwoI	GCNNNNNNNGC	4 cut(s)	61, 100, 117, 224
NaeI	GCCGGC	2 cut(s)	122, 210
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	78
NgoMIV	GCCGGC	2 cut(s)	120, 208
NlaIV	GGNNCC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	3 cut(s)	82, 209, 236
PctI	GAATGC	1 cut(s)	111
PdiI	GCCGGC	2 cut(s)	122, 210
PfeI	GAWTC	1 cut(s)	421
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	5 cut(s)	66, 126, 207, 226, 262
Psp6I	CCWGG	2 cut(s)	50, 218
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	2 cut(s)	50, 218
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	3 cut(s)	48, 54, 222
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	78
PsyI	GACNNNGTC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	5 cut(s)	65, 125, 206, 225, 261
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	3 cut(s)	48, 54, 222
ScrFI	CCNGG	3 cut(s)	52, 117, 220
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	5 cut(s)	91, 129, 163, 193, 245
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	261
SgrAI	CRCCGGYG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	8 cut(s)	65, 82, 149, 206, 216, 225, 246, 378
SspI	AATATT	1 cut(s)	370
StyD4I	CCNGG	3 cut(s)	50, 115, 218
TaaI	ACNGT	2 cut(s)	37, 459
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	4 cut(s)	5, 142, 239, 357
TasI	AATT	1 cut(s)	326
TauI	GCSGC	3 cut(s)	67, 208, 227
TfiI	GAWTC	1 cut(s)	421
TscAI	CASTG	2 cut(s)	183, 421
TseI	GCWGC	2 cut(s)	124, 260
TspDTI	ATGAA	2 cut(s)	171, 423
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	183, 421
Tth111I	GACNNNGTC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.