Rroxscaffold_3G00232030

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008277
Physical Location & Seq
Forward (+)
17613244 .. 17613510
267 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00232030.1

Sequence Viewer

Length: 267 bp
ATGTCAATCCCAAGACCTTCACCGGCACCATCCACCGTCCAAGACCGCCGGGACCGCATGCTCACCGGCACCGGCCGCAACAACTTCGCATCCGCCGACTTCGGCCCCTCCGGCCTCCTCGTATTCCCCGGCGGCTCCATCTCTCGTCATCAACACCCGTTCAATGCAGCTCGTCGTTCCCCTCCCCGTGCCTCCCCCCTCCCCCTCCCAATCCTCCTCGCCACCGCCACGTCATCACTATCCCCCTTCGTCACCTCCGTCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.35

Weight (kDa)

12.0

Isoelectric Point (pI)

81.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR11_1st PF23751 25 - 88 5.2e-06 WDR11 first beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 25, 68
AciI CCGC 6 cut(s) 46, 55, 76, 93, 132, 225
AcoI YGGCCR 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 1 cut(s) 163
AjiI CACGTC 1 cut(s) 231
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AoxI GGCC 3 cut(s) 73, 103, 112
ApeKI GCWGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 52, 104
AsuC2I CCSGG 2 cut(s) 50, 129
AsuHPI GGTGA 3 cut(s) 12, 55, 244
AvaII GGWCC 1 cut(s) 52
BanI GGYRCC 2 cut(s) 25, 68
BbvI GCAGC 1 cut(s) 179
BccI CCATC 2 cut(s) 37, 146
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BcnI CCSGG 2 cut(s) 50, 129
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 3 cut(s) 76, 133, 168
BlsI GCNGC 3 cut(s) 77, 134, 169
Bme1390I CCNGG 2 cut(s) 50, 129
Bme18I GGWCC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 52, 104
BmiI GGNNCC 5 cut(s) 27, 53, 70, 106, 136
BmrFI CCNGG 2 cut(s) 50, 129
BmsI GCATC 1 cut(s) 98
BpuMI CCSGG 2 cut(s) 50, 129
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 3 cut(s) 22, 65, 71
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 29, 89
BseLI CCNNNNNNNGG 1 cut(s) 261
BseRI GAGGAG 2 cut(s) 107, 206
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 3 cut(s) 75, 105, 114
BshNI GGYRCC 2 cut(s) 25, 68
BsiEI CGRYCG 1 cut(s) 76
BsiSI CCGG 7 cut(s) 23, 49, 66, 72, 111, 129, 262
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 3 cut(s) 75, 105, 114
BspACI CCGC 6 cut(s) 46, 55, 76, 93, 132, 225
BspANI GGCC 3 cut(s) 75, 105, 114
BspLI GGNNCC 5 cut(s) 27, 53, 70, 106, 136
BspT107I GGYRCC 2 cut(s) 25, 68
BsrFI RCCGGY 3 cut(s) 22, 65, 71
BssAI RCCGGY 3 cut(s) 22, 65, 71
BssECI CCNNGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 59
BstF5I GGATG 2 cut(s) 29, 89
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 54, 75, 111
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 48, 127
BstV1I GCAGC 1 cut(s) 179
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 3 cut(s) 75, 105, 114
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 2 cut(s) 29, 89
Cac8I GCNNGC 1 cut(s) 59
Cfr10I RCCGGY 3 cut(s) 22, 65, 71
Cfr13I GGNCC 2 cut(s) 52, 104
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 75, 105, 114, 135, 170
CviKI_1 RGCY 5 cut(s) 75, 105, 114, 135, 170
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 82
EclXI CGGCCG 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 52
Eco52I CGGCCG 1 cut(s) 73
FaeI CATG 1 cut(s) 61
FaiI YATR 1 cut(s) 59
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 76, 133, 168
FokI GGATG 2 cut(s) 16, 76
Fsp4HI GCNGC 3 cut(s) 76, 133, 168
GluI GCNGC 3 cut(s) 76, 133, 168
HaeIII GGCC 3 cut(s) 75, 105, 114
HapII CCGG 7 cut(s) 23, 49, 66, 72, 111, 129, 262
Hin1II CATG 1 cut(s) 61
HpaII CCGG 7 cut(s) 23, 49, 66, 72, 111, 129, 262
HphI GGTGA 3 cut(s) 12, 55, 244
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 27, 256
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 75, 111
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 6 cut(s) 36, 62, 79, 85, 124, 142
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 98
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 250
MspI CCGG 7 cut(s) 23, 49, 66, 72, 111, 129, 262
MspR9I CCNGG 2 cut(s) 50, 129
MwoI GCNNNNNNNGC 3 cut(s) 54, 75, 111
NciI CCSGG 2 cut(s) 50, 129
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 5 cut(s) 27, 53, 70, 106, 136
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 255
PkrI GCNGC 3 cut(s) 77, 134, 169
PspN4I GGNNCC 5 cut(s) 27, 53, 70, 106, 136
PspPI GGNCC 2 cut(s) 52, 104
SatI GCNGC 3 cut(s) 76, 133, 168
Sau96I GGNCC 2 cut(s) 52, 104
ScrFI CCNGG 2 cut(s) 50, 129
SetI ASST 4 cut(s) 19, 172, 233, 257
SfaNI GCATC 1 cut(s) 98
SfiI GGCCNNNNNGGCC 1 cut(s) 111
SinI GGWCC 1 cut(s) 52
SphI GCATGC 1 cut(s) 61
SsiI CCGC 6 cut(s) 46, 55, 76, 93, 132, 225
StyD4I CCNGG 2 cut(s) 48, 127
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 233
TauI GCSGC 2 cut(s) 78, 135
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 52
XceI RCATGY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.