Rh3DG140600

protein At2g39795, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0008277
Physical Location & Seq
Reverse (-)
12012015 .. 12013166
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG140600.1

Sequence Viewer

Length: 756 bp
ATGGCTTTGTTCTCGTCGATGCTTCGCAGGCCATCCTACTCCTTATTCTCCTTCGTGCTCCGCACCGTCGGTTCTGCAACAACCTTTCACAGCCGATTCTCCACCGTCCCCAATTTCGGCGGTGAGATCACCCGAGAATGCTCTGTTCCATTTCGGCATTTCTCCGCCGCTACCGCCACCGCCATGAAACCGGCCACCGACGAAAGGGTAGTCGGAGCTCTCGAGTCTGAGATCAAGGTCGCCGAAGAGGACATAGAAAATTATAAGGTGGGTGAGGTTGCAGATGGGTTTCCTTTTGAAATAGTAGACAATGCTGGAGAGCAGACCATAATGCTCAGAAGAGAATTCGATGGAGAAATCATCAAAGTGGCGGTCGATATTCCTAATGTTTCTTCCACCGAAGACAATGATGATGAGGAGGAGAATGAAGACACTGGGATTCCAATGGTTGTGAGTGTTTCGAAAGGAAATGAGCAGGAGCTGGAGTTTGGGCTCACTGCCTTTTCTGATGAGATTTGCGTCGATAGCTTGTCGATGAGGCAGCCAGAGGATTCTGAAGGATCGAAACGGATTGCATATGAAGGGCCTAATTTTAGTGACTTGGATGAGAGCTTCCAGAAGGCCTTGCAGAAATATCTGGAGGTTCGAGGGATCAAGTCGAGCATAACTAAGTTCTTGCAGGAGTATATGAGGAACAAAGACTTCAGAGAGTACTTGATGTGGTTGAAGAACCTAAAAGGTTTTATTGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

251

Amino Acids

28.35

Weight (kDa)

4.56

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 74 - 249 1.3e-42 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccI GTMKAC 1 cut(s) 306
AciI CCGC 7 cut(s) 61, 120, 165, 168, 174, 180, 371
AclWI GGATC 2 cut(s) 568, 659
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 576, 688
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 2 cut(s) 116, 204
AgsI TTSAA 2 cut(s) 299, 727
AluBI AGCT 4 cut(s) 218, 481, 528, 612
AluI AGCT 4 cut(s) 218, 481, 528, 612
Alw21I GWGCWC 2 cut(s) 60, 220
AlwI GGATC 2 cut(s) 568, 659
AlwNI CAGNNNCTG 1 cut(s) 481
Ama87I CYCGRG 2 cut(s) 132, 221
AoxI GGCC 4 cut(s) 29, 192, 584, 621
ApeKI GCWGC 1 cut(s) 541
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 4 cut(s) 195, 227, 357, 389
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 3 cut(s) 121, 134, 284
AsuII TTCGAA 1 cut(s) 461
AvaI CYCGRG 2 cut(s) 132, 221
BanII GRGCYC 2 cut(s) 220, 495
BbsI GAAGAC 2 cut(s) 408, 435
Bbv12I GWGCWC 2 cut(s) 60, 220
BbvI GCAGC 1 cut(s) 553
BccI CCATC 3 cut(s) 40, 278, 344
BisI GCNGC 2 cut(s) 168, 542
BlsI GCNGC 2 cut(s) 169, 543
BmcAI AGTACT 1 cut(s) 713
BmeT110I CYCGRG 2 cut(s) 132, 221
BmgT120I GGNCC 1 cut(s) 584
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 444
BpiI GAAGAC 2 cut(s) 408, 435
BpmI CTGGAG 3 cut(s) 336, 503, 659
Bpu14I TTCGAA 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 204
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 439
BseGI GGATG 2 cut(s) 32, 610
BseLI CCNNNNNNNGG 2 cut(s) 116, 204
BseMII CTCAG 2 cut(s) 219, 349
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 2 cut(s) 431, 434
BseXI GCAGC 1 cut(s) 553
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 4 cut(s) 31, 194, 586, 623
BsiEI CGRYCG 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 60, 220
BsiHKCI CYCGRG 2 cut(s) 132, 221
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 116, 204
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 4 cut(s) 31, 194, 586, 623
BsoBI CYCGRG 2 cut(s) 132, 221
Bsp119I TTCGAA 1 cut(s) 461
Bsp1286I GDGCHC 3 cut(s) 60, 220, 495
Bsp143I GATC 4 cut(s) 126, 231, 560, 651
BspACI CCGC 7 cut(s) 61, 120, 165, 168, 174, 180, 371
BspANI GGCC 4 cut(s) 31, 194, 586, 623
BspCNI CTCAG 2 cut(s) 220, 348
BspPI GGATC 2 cut(s) 568, 659
BspT104I TTCGAA 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 190
BssMI GATC 4 cut(s) 126, 231, 560, 651
Bst4CI ACNGT 2 cut(s) 67, 106
Bst6I CTCTTC 2 cut(s) 240, 334
BstBI TTCGAA 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 3 cut(s) 228, 335, 669
BstF5I GGATG 2 cut(s) 32, 610
BstKTI GATC 4 cut(s) 129, 234, 563, 654
BstMBI GATC 4 cut(s) 126, 231, 560, 651
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 3 cut(s) 28, 173, 525
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 2 cut(s) 408, 435
BsuRI GGCC 4 cut(s) 31, 194, 586, 623
BtsCI GGATG 2 cut(s) 32, 610
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 2 cut(s) 432, 495
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 584
CseI GACGC 1 cut(s) 508
Csp6I GTAC 1 cut(s) 712
CviAII CATG 1 cut(s) 184
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 3 cut(s) 228, 335, 669
DpnI GATC 4 cut(s) 128, 233, 562, 653
DpnII GATC 4 cut(s) 126, 231, 560, 651
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 240, 334
EarI CTCTTC 2 cut(s) 240, 334
EciI GGCGGA 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 218
Eco147I AGGCCT 1 cut(s) 623
Eco24I GRGCYC 2 cut(s) 220, 495
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 576, 688
Eco88I CYCGRG 2 cut(s) 132, 221
EcoICRI GAGCTC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 584
EcoRI GAATTC 1 cut(s) 344
EcoT38I GRGCYC 2 cut(s) 220, 495
FaeI CATG 1 cut(s) 187
FaiI YATR 9 cut(s) 185, 254, 264, 329, 577, 579, 665, 687, 689
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 183
FauNDI CATATG 1 cut(s) 577
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 168, 542
FokI GGATG 2 cut(s) 19, 617
FriOI GRGCYC 2 cut(s) 220, 495
Fsp4HI GCNGC 2 cut(s) 168, 542
GluI GCNGC 2 cut(s) 168, 542
GsuI CTGGAG 3 cut(s) 336, 503, 659
HaeIII GGCC 4 cut(s) 31, 194, 586, 623
HapII CCGG 1 cut(s) 191
HgaI GACGC 1 cut(s) 508
Hin1II CATG 1 cut(s) 187
HinfI GANTC 4 cut(s) 96, 224, 439, 551
HpaII CCGG 1 cut(s) 191
HphI GGTGA 3 cut(s) 121, 134, 284
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 6 cut(s) 215, 229, 338, 508, 556, 707
Hpy188III TCNNGA 3 cut(s) 221, 616, 638
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 4 cut(s) 19, 71, 203, 524
HpyAV CCTTC 4 cut(s) 61, 551, 575, 613
HpyCH4III ACNGT 2 cut(s) 67, 106
HpyCH4V TGCA 5 cut(s) 77, 281, 575, 628, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 173, 525
HpyF3I CTNAG 3 cut(s) 228, 335, 669
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 4 cut(s) 126, 231, 560, 651
LmnI GCTCC 3 cut(s) 63, 215, 478
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 596
MalI GATC 4 cut(s) 128, 233, 562, 653
MboI GATC 4 cut(s) 126, 231, 560, 651
MboII GAAGA 6 cut(s) 257, 351, 384, 413, 440, 739
MhlI GDGCHC 3 cut(s) 60, 220, 495
MluCI AATT 4 cut(s) 112, 259, 344, 589
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 9 cut(s) 241, 268, 409, 412, 531, 541, 634, 641, 684
MslI CAYNNNNRTG 2 cut(s) 182, 365
MspI CCGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 28, 173, 525
NdeI CATATG 1 cut(s) 577
NdeII GATC 4 cut(s) 126, 231, 560, 651
NlaIII CATG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 596
NspV TTCGAA 1 cut(s) 461
PaeR7I CTCGAG 1 cut(s) 221
PceI AGGCCT 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 96, 439, 551
PkrI GCNGC 2 cut(s) 169, 543
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 584
PstNI CAGNNNCTG 1 cut(s) 481
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
RseI CAYNNNNRTG 2 cut(s) 182, 365
SacI GAGCTC 1 cut(s) 220
SatI GCNGC 2 cut(s) 168, 542
Sau3AI GATC 4 cut(s) 126, 231, 560, 651
Sau96I GGNCC 1 cut(s) 584
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 1 cut(s) 233
SduI GDGCHC 3 cut(s) 60, 220, 495
SfaNI GCATC 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 461
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 182, 365
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 112, 259, 344, 589
SseBI AGGCCT 1 cut(s) 623
SsiI CCGC 7 cut(s) 61, 120, 165, 168, 174, 180, 371
SstI GAGCTC 1 cut(s) 220
StuI AGGCCT 1 cut(s) 623
TaaI ACNGT 2 cut(s) 67, 106
TasI AATT 4 cut(s) 112, 259, 344, 589
TatI WGTACW 1 cut(s) 711
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 3 cut(s) 96, 439, 551
TscAI CASTG 2 cut(s) 439, 502
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 3 cut(s) 200, 441, 594
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 2 cut(s) 439, 502
XapI RAATTY 1 cut(s) 344
XhoI CTCGAG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.