Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012005.1

Orthogroup ID

OG0008277

Physical Location & Seq

Genomic Coordinates Reverse (-)

11760 .. 14119

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012005.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgactgagatctttttctcttcacctctccacaagaagcgaaggagccttctctctctctctctctctctcaaccatgtcgatcctaagaccctcaccggtgccgtccaccgtccaccgtccaagactgctgggactgtatgctccttggcccacccaactgcaacaacttcgaatccgcagaagtcagccccttcggcctcctcgtattccccgccggcagctctatctccatcatcgacacccgttcaatgcatctcgtcgtctccctccccatgcctcccctctccccttcccaatcctactctgccaccgccacgtcatcactatcccccttcgtcacctccatctggtggaccccaatccttctcggccgcgacctcctctccatcgagccttccagctcccacctcctccttgccgccaaggccgcatcggccacctcgacctctagctcaagtcgccgggaaggctgcagatgggtttccttttgaaatggtagagaatgccggagagcagaccataatgctcagaagagaatttgatgaagaaatcatcaaagtggctgtcaatattcctaatatttcttccgttgaggacaatgatgatgaggaggagaataaagacactaggattccaatggttgcgacaaacctgtcggcgtcggacttggtgggctattgctcaatgagaacatcgccggcgactctgacggagtttcaaacaaaggaatgctcgaggaagatggggtttgccgcaatctcgggagtctctgcaactggcgaagtcccagatgggcttgacttcggagcggcgacgatcattagagaggaagaagaccaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

282

Amino Acids

29.8

Weight (kDa)

5.98

Isoelectric Point (pI)

78.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02050
fragaria_vesca	FvH4_6g13000
malus_domestica	MD00G1141400.v1.1 MD12G1150500.v1.1
prunus_persica	Prupe.6G262100_v2.0.a1
pyrus_communis	pycom12g14430
rosa_chinensis	RchiOBHm_Chr3g0465131
rosa_laevigata	RLG00000008900 RLG00000024654
rosa_multiflora	Rmu_sc0012005.1_g000006 Rmu_ssc0000252.1_g000039
rosa_roxburghii	Rroxscaffold_3G00232030 Rroxscaffold_6G00415220
rosa_rugosa	Rorug03G0075700
rosa_samantha	Rh3BG139300 Rh3CG141300 Rh3CG149600 Rh3CG149700 Rh3DG140600 Rh6CG170300 Rh6DG162600 Rh7AG360700
rosa_wichuraiana	Rw3G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	812
AccII	CGCG	1 cut(s)	377
AciI	CCGC	8 cut(s)	179, 215, 314, 375, 422, 431, 756, 812
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	2 cut(s)	372, 437
AcsI	RAATTY	1 cut(s)	539
AcyI	GRCGYC	1 cut(s)	662
AfiI	CCNNNNNNNGG	2 cut(s)	350, 353
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	251, 494, 722
AjiI	CACGTC	1 cut(s)	320
AluBI	AGCT	3 cut(s)	224, 404, 455
AluI	AGCT	3 cut(s)	224, 404, 455
Alw26I	GTCTC	2 cut(s)	270, 775
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	2 cut(s)	736, 763
AoxI	GGCC	5 cut(s)	150, 198, 372, 428, 437
ApeKI	GCWGC	2 cut(s)	221, 473
ApoI	RAATTY	1 cut(s)	539
ArsI	GACNNNNNNTTYG	2 cut(s)	552, 584
AsiGI	ACCGGT	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	151, 356
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	3 cut(s)	15, 88, 333
AsuII	TTCGAA	1 cut(s)	173
AvaI	CYCGRG	2 cut(s)	736, 763
AvaII	GGWCC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	843
BbvI	GCAGC	2 cut(s)	233, 460
BccI	CCATC	6 cut(s)	241, 355, 397, 473, 739, 788
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	270, 775
BfaI	CTAG	2 cut(s)	452, 630
BfmI	CTRYAG	1 cut(s)	474
BglI	GCCNNNNNGGC	4 cut(s)	197, 427, 436, 470
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	7 cut(s)	222, 375, 422, 431, 474, 756, 813
BlsI	GCNGC	7 cut(s)	223, 376, 423, 432, 475, 757, 814
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	2 cut(s)	736, 763
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	151, 356
BmiI	GGNNCC	3 cut(s)	47, 103, 358
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	2 cut(s)	264, 442
BpiI	GAAGAC	1 cut(s)	843
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	147, 425
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 353
Bse118I	RCCGGY	3 cut(s)	98, 217, 700
Bse1I	ACTGG	1 cut(s)	784
BseDI	CCNNGG	2 cut(s)	147, 425
BseLI	CCNNNNNNNGG	2 cut(s)	350, 353
BseMII	CTCAG	1 cut(s)	544
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	5 cut(s)	193, 373, 403, 626, 629
BseX3I	CGGCCG	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	233, 460
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	5 cut(s)	152, 200, 374, 430, 439
BshNI	GGYRCC	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	375
BsiHKCI	CYCGRG	2 cut(s)	736, 763
BsiSI	CCGG	5 cut(s)	99, 218, 465, 510, 701
BslFI	GGGAC	2 cut(s)	148, 773
BslI	CCNNNNNNNGG	2 cut(s)	350, 353
BsmAI	GTCTC	2 cut(s)	270, 775
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	148, 773
BsmI	GAATGC	2 cut(s)	511, 737
BsnI	GGCC	5 cut(s)	152, 200, 374, 430, 439
BsoBI	CYCGRG	2 cut(s)	736, 763
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	9, 82, 819
BspACI	CCGC	8 cut(s)	179, 215, 314, 375, 422, 431, 756, 812
BspANI	GGCC	5 cut(s)	152, 200, 374, 430, 439
BspCNI	CTCAG	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	3 cut(s)	47, 103, 358
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	812
BsrFI	RCCGGY	3 cut(s)	98, 217, 700
BsrI	ACTGG	1 cut(s)	784
BssAI	RCCGGY	3 cut(s)	98, 217, 700
BssECI	CCNNGG	2 cut(s)	147, 425
BssMI	GATC	3 cut(s)	9, 82, 819
BssNI	GRCGYC	1 cut(s)	662
BssT1I	CCWWGG	2 cut(s)	147, 425
Bst4CI	ACNGT	3 cut(s)	113, 120, 139
Bst6I	CTCTTC	2 cut(s)	25, 529
BstACI	GRCGYC	1 cut(s)	662
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	219, 702
BstDEI	CTNAG	3 cut(s)	6, 87, 530
BstFNI	CGCG	1 cut(s)	377
BstKTI	GATC	3 cut(s)	12, 85, 822
BstMAI	GTCTC	2 cut(s)	270, 775
BstMBI	GATC	3 cut(s)	9, 82, 819
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 427, 430, 436, 461, 470
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	233, 460
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BstZI	CGGCCG	1 cut(s)	372
BsuRI	GGCC	5 cut(s)	152, 200, 374, 430, 439
BtgZI	GCGATG	1 cut(s)	681
BtrI	CACGTC	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	219, 702
Cfr10I	RCCGGY	3 cut(s)	98, 217, 700
Cfr13I	GGNCC	2 cut(s)	151, 356
CseI	GACGC	1 cut(s)	651
CspAI	ACCGGT	1 cut(s)	98
CviAII	CATG	2 cut(s)	77, 276
DdeI	CTNAG	3 cut(s)	6, 87, 530
DpnI	GATC	3 cut(s)	11, 84, 821
DpnII	GATC	3 cut(s)	9, 82, 819
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
EaeI	YGGCCR	2 cut(s)	372, 437
EagI	CGGCCG	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	25, 529
EarI	CTCTTC	2 cut(s)	25, 529
EclXI	CGGCCG	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	147, 425
Eco47I	GGWCC	1 cut(s)	356
Eco52I	CGGCCG	1 cut(s)	372
Eco88I	CYCGRG	2 cut(s)	736, 763
EcoT14I	CCWWGG	2 cut(s)	147, 425
EcoT22I	ATGCAT	1 cut(s)	257
ErhI	CCWWGG	2 cut(s)	147, 425
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	2 cut(s)	80, 279
FaiI	YATR	4 cut(s)	78, 142, 277, 524
FaqI	GGGAC	2 cut(s)	148, 773
FatI	CATG	2 cut(s)	76, 275
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	7 cut(s)	222, 375, 422, 431, 474, 756, 813
Fsp4HI	GCNGC	7 cut(s)	222, 375, 422, 431, 474, 756, 813
FspBI	CTAG	2 cut(s)	452, 630
GluI	GCNGC	7 cut(s)	222, 375, 422, 431, 474, 756, 813
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	5 cut(s)	152, 200, 374, 430, 439
HapII	CCGG	5 cut(s)	99, 218, 465, 510, 701
HgaI	GACGC	1 cut(s)	651
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	2 cut(s)	80, 279
HinfI	GANTC	4 cut(s)	175, 634, 706, 768
HpaII	CCGG	5 cut(s)	99, 218, 465, 510, 701
HphI	GGTGA	3 cut(s)	15, 88, 333
Hpy166II	GTNNAC	3 cut(s)	109, 116, 356
Hpy188I	TCNGA	4 cut(s)	533, 667, 711, 809
Hpy188III	TCNNGA	1 cut(s)	765
Hpy8I	GTNNAC	3 cut(s)	109, 116, 356
Hpy99I	CGWCG	3 cut(s)	265, 667, 820
HpyAV	CCTTC	8 cut(s)	36, 59, 204, 302, 345, 376, 407, 463
HpyCH4III	ACNGT	3 cut(s)	113, 120, 139
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	4 cut(s)	164, 255, 476, 776
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 427, 430, 436, 461, 470
HpyF3I	CTNAG	3 cut(s)	6, 87, 530
HpySE526I	ACGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	2 cut(s)	80, 279
KroI	GCCGGC	2 cut(s)	217, 700
KroNI	GCCGGC	2 cut(s)	219, 702
Kzo9I	GATC	3 cut(s)	9, 82, 819
LmnI	GCTCC	4 cut(s)	45, 149, 409, 809
Lsp1109I	GCAGC	2 cut(s)	233, 460
LweI	GCATC	2 cut(s)	264, 442
MaeI	CTAG	2 cut(s)	452, 630
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	3 cut(s)	11, 84, 821
MbiI	CCGCTC	1 cut(s)	812
MboI	GATC	3 cut(s)	9, 82, 819
MboII	GAAGA	7 cut(s)	12, 546, 560, 579, 754, 845, 848
MflI	RGATCY	1 cut(s)	9
MluCI	AATT	1 cut(s)	539
MlyI	GAGTC	2 cut(s)	700, 777
MmeI	TCCRAC	1 cut(s)	645
Mph1103I	ATGCAT	1 cut(s)	257
MreI	CGCCGGCG	1 cut(s)	700
MroNI	GCCGGC	2 cut(s)	217, 700
MslI	CAYNNNNRTG	1 cut(s)	560
MspI	CCGG	5 cut(s)	99, 218, 465, 510, 701
MspR9I	CCNGG	1 cut(s)	466
Mva1269I	GAATGC	2 cut(s)	511, 737
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	6 cut(s)	197, 427, 430, 436, 461, 470
NaeI	GCCGGC	2 cut(s)	219, 702
NciI	CCSGG	1 cut(s)	466
NdeII	GATC	3 cut(s)	9, 82, 819
NgoMIV	GCCGGC	2 cut(s)	217, 700
NlaIII	CATG	2 cut(s)	80, 279
NlaIV	GGNNCC	3 cut(s)	47, 103, 358
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	339
NsiI	ATGCAT	1 cut(s)	257
NspV	TTCGAA	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 442
PctI	GAATGC	2 cut(s)	511, 737
PdiI	GCCGGC	2 cut(s)	219, 702
PfeI	GAWTC	2 cut(s)	175, 634
PflMI	CCANNNNNTGG	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	98
PkrI	GCNGC	7 cut(s)	223, 376, 423, 432, 475, 757, 814
PleI	GAGTC	2 cut(s)	700, 776
PpsI	GAGTC	2 cut(s)	700, 776
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	3 cut(s)	47, 103, 358
PspPI	GGNCC	2 cut(s)	151, 356
PspXI	VCTCGAGB	1 cut(s)	736
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	560
SatI	GCNGC	7 cut(s)	222, 375, 422, 431, 474, 756, 813
Sau3AI	GATC	3 cut(s)	9, 82, 819
Sau96I	GGNCC	2 cut(s)	151, 356
SchI	GAGTC	2 cut(s)	700, 777
ScrFI	CCNGG	1 cut(s)	466
SfaNI	GCATC	2 cut(s)	264, 442
SfcI	CTRYAG	1 cut(s)	474
SfiI	GGCCNNNNNGGCC	1 cut(s)	436
Sfr274I	CTCGAG	1 cut(s)	736
SfuI	TTCGAA	1 cut(s)	173
SgrAI	CRCCGGYG	2 cut(s)	98, 700
SinI	GGWCC	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	2 cut(s)	456, 736
SmoI	CTYRAG	2 cut(s)	456, 736
Sse9I	AATT	1 cut(s)	539
SsiI	CCGC	8 cut(s)	179, 215, 314, 375, 422, 431, 756, 812
SspI	AATATT	2 cut(s)	574, 583
SspMI	CTAG	2 cut(s)	452, 630
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	2 cut(s)	147, 425
TaaI	ACNGT	3 cut(s)	113, 120, 139
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	6 cut(s)	81, 173, 239, 392, 445, 737
TasI	AATT	1 cut(s)	539
TauI	GCSGC	5 cut(s)	377, 424, 433, 758, 815
TfiI	GAWTC	2 cut(s)	175, 634
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	2 cut(s)	221, 473
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	561
TspGWI	ACGGA	2 cut(s)	580, 728
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	736
XspI	CTAG	2 cut(s)	452, 630
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.