Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Reverse (-)

19955344 .. 19956449

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAGAACGACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATGCTCGGCAACAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCTTAACATTGGTCATCTTGATGCTAATGGTCTCTACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAAGCTAAACAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

82

Amino Acids

9.07

Weight (kDa)

7.8

Isoelectric Point (pI)

14.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S21e	PF01249	1 - 77	6.5e-37	Ribosomal protein S21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	31, 100, 236
AluI	AGCT	3 cut(s)	31, 100, 236
Alw21I	GWGCWC	2 cut(s)	33, 181
Alw26I	GTCTC	2 cut(s)	134, 180
AlwI	GGATC	1 cut(s)	90
AlwNI	CAGNNNCTG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	2 cut(s)	33, 181
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	134, 180
BfuAI	ACCTGC	1 cut(s)	5
BmsI	GCATC	1 cut(s)	109
BoxI	GACNNNNGTC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	33, 181
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	134, 180
BsmBI	CGTCTC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	33, 181
Bsp143I	GATC	2 cut(s)	69, 82
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	69, 82
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	197, 246
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	72, 85
BstMAI	GTCTC	2 cut(s)	134, 180
BstMBI	GATC	2 cut(s)	69, 82
BstPAI	GACNNNNGTC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	135, 202
BveI	ACCTGC	1 cut(s)	5
CaiI	CAGNNNCTG	1 cut(s)	213
CseI	GACGC	2 cut(s)	20, 197
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	5 cut(s)	31, 100, 141, 211, 236
CviKI_1	RGCY	5 cut(s)	31, 100, 141, 211, 236
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	71, 84
DpnII	GATC	2 cut(s)	69, 82
EaeI	YGGCCR	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	1 cut(s)	89
FaiI	YATR	1 cut(s)	87
FatI	CATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	141
HgaI	GACGC	2 cut(s)	20, 197
Hin1II	CATG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	197, 246
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 82
LpnPI	CCDG	5 cut(s)	5, 123, 167, 193, 199
LweI	GCATC	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	71, 84
MboI	GATC	2 cut(s)	69, 82
MboII	GAAGA	2 cut(s)	232, 235
MhlI	GDGCHC	2 cut(s)	33, 181
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	1 cut(s)	143
MluNI	TGGCCA	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	141
NdeII	GATC	2 cut(s)	69, 82
NlaIII	CATG	1 cut(s)	89
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	69, 82
SduI	GDGCHC	2 cut(s)	33, 181
SetI	ASST	6 cut(s)	19, 24, 33, 102, 231, 238
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	197, 246
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	142, 202
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	142, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.