Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Reverse (-)

21555707 .. 21557482

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28030.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCAGAACGAAGAAGGAGTTATCACTGAGCTTTACATTCCCAGGAAATGCTCAGCGACGAACAGGCTAATCACCTCAAAAGACCATGCATCTGTCCAGATTAACATCGGGCATCTCGATGAGAATGGTTTCTACATTGGCCAATTCTCCACTTTCGCTCTCTGTGGTTACGTCCGTGCTCAGGGAGATGCTGACAGTGGTCTAGACCGACTCTGGCAAAAAAAGAAAGTTGAAGTCAGACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

83

Amino Acids

9.29

Weight (kDa)

6.71

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S21e	PF01249	1 - 77	8.4e-37	Ribosomal protein S21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	43
BfaI	CTAG	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	3 cut(s)	98, 121, 178
BoxI	GACNNNNGTC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu1102I	GCTNAGC	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	41
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	3 cut(s)	18, 66, 194
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp1720I	GCTNAGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	19, 65, 193
BssECI	CCNNGG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	197, 246
BstDEI	CTNAG	3 cut(s)	27, 52, 180
BstNI	CCWGG	1 cut(s)	43
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	24, 202
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	3 cut(s)	31, 67, 141
CviKI_1	RGCY	3 cut(s)	31, 67, 141
DdeI	CTNAG	3 cut(s)	27, 52, 180
EaeI	YGGCCR	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	91
FaeI	CATG	1 cut(s)	89
FaiI	YATR	1 cut(s)	87
FatI	CATG	1 cut(s)	85
FspBI	CTAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	89
HinfI	GANTC	1 cut(s)	210
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	3 cut(s)	97, 116, 203
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	2 cut(s)	197, 246
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	4, 89
HpyF3I	CTNAG	3 cut(s)	27, 52, 180
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	89
LpnPI	CCDG	6 cut(s)	28, 49, 55, 110, 167, 199
LweI	GCATC	3 cut(s)	98, 121, 178
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	167
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	1 cut(s)	143
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	1 cut(s)	85
Mox20I	TGGCCA	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
NlaIII	CATG	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	102
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	3 cut(s)	33, 77, 174
SfaNI	GCATC	3 cut(s)	98, 121, 178
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	197, 246
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	117
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	31, 202
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	31, 202
XbaI	TCTAGA	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.