Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Forward (+)

14145857 .. 14147232

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1170000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCAAAACGAGGAAGGAATCATCACCGAGCTCTACATCCCGAGGAAATGCTCGGCGACGAACAGGCTGATCACCTCCAAGGACCACGCTTCTGTTCAGATCAACGTTGGGCATTTGGATGAACATGGCATCTACACCGGCCAATTCTCCACCTTCGCGCTGTGCGGCTACGTCCGTGCTCAGGGAGAGGCCGACGGTGGTTTGGACCGACTCTGGCAGAAGAAGAAAACTGAAGTTAAACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

83

Amino Acids

9.22

Weight (kDa)

6.82

Isoelectric Point (pI)

13.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S21e	PF01249	1 - 76	1.3e-36	Ribosomal protein S21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AciI	CCGC	1 cut(s)	165
AclI	AACGTT	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	2 cut(s)	33, 181
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	139, 189
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	82, 205
AsuHPI	GGTGA	2 cut(s)	16, 64
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	82, 205
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	2 cut(s)	33, 181
BclI	TGATCA	1 cut(s)	69
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	82, 205
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	82, 205
BmsI	GCATC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	41, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	41, 78
BseGI	GGATG	2 cut(s)	36, 124
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	141, 191
BsiHKAI	GWGCWC	2 cut(s)	33, 181
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	2 cut(s)	141, 191
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	33, 181
Bsp143I	GATC	2 cut(s)	69, 99
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	141, 191
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	41, 78
BssMI	GATC	2 cut(s)	69, 99
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	197, 246
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	36, 124
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	72, 102
BstMBI	GATC	2 cut(s)	69, 99
BstUI	CGCG	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	141, 191
BtsCI	GGATG	2 cut(s)	36, 124
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	82, 205
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	31, 67, 141, 168, 191
CviKI_1	RGCY	5 cut(s)	31, 67, 141, 168, 191
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	71, 101
DpnII	GATC	2 cut(s)	69, 99
EaeI	YGGCCR	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	82, 205
Eco53kI	GAGCTC	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	128
FaiI	YATR	1 cut(s)	126
FatI	CATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	23, 131
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	166
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	141, 191
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	18, 210
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	16, 64
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	40
Hpy99I	CGWCG	2 cut(s)	61, 197
HpyAV	CCTTC	2 cut(s)	8, 163
HpyCH4III	ACNGT	2 cut(s)	197, 246
HpyCH4IV	ACGT	2 cut(s)	105, 171
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	105, 171
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 99
LpnPI	CCDG	4 cut(s)	49, 151, 167, 199
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	2 cut(s)	105, 171
MalI	GATC	2 cut(s)	71, 101
MboI	GATC	2 cut(s)	69, 99
MboII	GAAGA	2 cut(s)	232, 235
MhlI	GDGCHC	2 cut(s)	33, 181
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	4, 36, 85, 181
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	158
NdeII	GATC	2 cut(s)	69, 99
NlaIII	CATG	1 cut(s)	128
NmeAIII	GCCGAG	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	82, 205
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	2 cut(s)	69, 99
Sau96I	GGNCC	2 cut(s)	82, 205
SchI	GAGTC	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	33, 181
SetI	ASST	5 cut(s)	33, 77, 108, 155, 174
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	2 cut(s)	82, 205
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	197, 246
TaiI	ACGT	2 cut(s)	108, 174
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	143
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	82, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.