Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Forward (+)

13672859 .. 13674444

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1168900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCAAAACGAGGAGGGAATCATCACCGAGCTCTACATCCCGAGGAAATGCTCGGCGACGAACAGGCTGATCACCTCCAAGGACCACGCGTCTGTTCAGATTAACATTGGGCATTTGGATGAGCATGGCATCTACACTGGCCAGTGCTCCACCTTTGCTCTCTGCGGCTACGTCCGTGCTCAGGGAGAGGCCGACAGTGGTTTGGACCGTCTCTGGCAGAAGAAGAAAACCGAAGTTAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

82

Amino Acids

9.1

Weight (kDa)

6.81

Isoelectric Point (pI)

18.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S21e	PF01249	1 - 76	1.1e-36	Ribosomal protein S21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	87
AhdI	GACNNNNNGTC	1 cut(s)	88
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	3 cut(s)	33, 149, 181
Alw26I	GTCTC	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	139, 189
AspS9I	GGNCC	2 cut(s)	82, 205
AsuHPI	GGTGA	2 cut(s)	16, 64
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	82, 205
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	3 cut(s)	33, 149, 181
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	82, 205
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	82, 205
BmsI	GCATC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	41, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	142, 142
BseDI	CCNNGG	2 cut(s)	41, 78
BseGI	GGATG	2 cut(s)	36, 124
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	142, 142
BseRI	GAGGAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	141, 191
BsiHKAI	GWGCWC	3 cut(s)	33, 149, 181
BsiHKCI	CYCGRG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	141, 191
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	3 cut(s)	33, 149, 181
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	141, 191
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	142, 142
BssECI	CCNNGG	2 cut(s)	41, 78
BssMI	GATC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	197, 209, 243
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	36, 124
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	141, 191
BtsCI	GGATG	2 cut(s)	36, 124
BtsIMutI	CAGTG	3 cut(s)	135, 149, 202
Cfr13I	GGNCC	2 cut(s)	82, 205
CseI	GACGC	1 cut(s)	78
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	31, 67, 141, 168, 191
CviKI_1	RGCY	5 cut(s)	31, 67, 141, 168, 191
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DriI	GACNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	139
Eam1105I	GACNNNNNGTC	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	82, 205
Eco53kI	GAGCTC	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	128
FaiI	YATR	1 cut(s)	126
FatI	CATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	23, 131
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	141, 191
HgaI	GACGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	18
HphI	GGTGA	2 cut(s)	16, 64
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	61
HpyCH4III	ACNGT	3 cut(s)	197, 209, 243
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	5 cut(s)	49, 123, 155, 167, 199
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	1 cut(s)	171
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	232, 235
MhlI	GDGCHC	3 cut(s)	33, 149, 181
MlsI	TGGCCA	1 cut(s)	141
MluI	ACGCGT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	5 cut(s)	4, 7, 36, 85, 181
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	2 cut(s)	102, 237
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	141
MvnI	CGCG	1 cut(s)	89
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	128
NmeAIII	GCCGAG	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	82, 205
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	102, 237
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	82, 205
SduI	GDGCHC	3 cut(s)	33, 149, 181
SetI	ASST	4 cut(s)	33, 77, 155, 174
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	2 cut(s)	82, 205
SmiMI	CAYNNNNRTG	1 cut(s)	117
SsiI	CCGC	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	3 cut(s)	197, 209, 243
TaiI	ACGT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	102, 237
Tru9I	TTAA	2 cut(s)	102, 237
TscAI	CASTG	3 cut(s)	142, 149, 202
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	3 cut(s)	142, 149, 202
VpaK11BI	GGWCC	2 cut(s)	82, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.